YBX1

General Information

Gene Name       : YBX1
Gene ID             : ENSG00000065978.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: YBX1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YBX1ENSG00000065978.18730.26920.76825.51ENCSR000AEF
HepG2YBX1ENSG00000065978.18899.54839.49869.51ENCSR985KAT
K562YBX1ENSG00000065978.181189.161314.991252.08ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq YBX1-BGKcLV15-K562ENCSR659UXOYBX1K562ReleasedENCSR404OHQ   CRISPRKD% = 62.1,63.7
knockdown followed by RNA-seq YBX1-BGHcLV16-HepG2ENCSR548OTLYBX1HepG2ReleasedENCSR964HKT   CRISPRKD% = 86.3,72.1






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
YBX1ENCAB593ZMIPA5-19453TK2671131Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
YBX1K562CRISPRENCSR659UXOENCSR404OHQYBX1-BGKcLV15-63,YBX1-BGKcLV15-64NT-BGKcLV15-1,NT-BGKcLV15-262.1,63.7ReleasedENCODE4
YBX1HepG2CRISPRENCSR548OTLENCSR964HKTYBX1-BGHcLV16-61,YBX1-BGHcLV16-62NT-BGHcLV16-1,NT-BGHcLV16-286.3,72.1ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
YBX1Product_ID: PA5-19453
Lot_ID: TK2671131
Source: Thermo Fisher
Target Name: YBX1-human		 ThermoFisher_PA5-19453_TK2671131_YBX1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the YBX1 specific antibody, PA5-19453. Lanes 1 and 3 are 2.5% of five million whole cell lysate input. Lanes 2 and 4 are 50% of IP enrichment from five million whole cell lysate using normal IgG antibody and the YBX1-specific antibody, PA5-19453. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for YBX1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • YBX1 RNA is bound by 28 proteins.  







eCLIP assay for YBX1 is not avaliable on ENCORE database.





28 proteins are bound to YBX1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14316770343167725+3'-UTR3.9591258.71598K562METAP2
chr14316669843166753+3'-UTR,intron-Proximal4.022218.16617HepG2PRPF8
chr14316784943167888+3'-UTR4.2446710.58399HepG2SUB1
chr14316766643167750+3'-UTR3.5201832.21340HepG2BCLAF1
chr14316768543167754+3'-UTR3.2051613.88081K562APOBEC3C
chr14316772043167753+3'-UTR4.33024400.00000K562PABPC4
chr14316767543167712+3'-UTR4.10213400.00000K562PABPC4
chr14316765343167703+3'-UTR4.44818400.00000K562METAP2
chr14316668343166693+3'-UTR5.67627400.00000K562METAP2
chr14316765143167653+3'-UTR,intron-Proximal4.73050400.00000K562METAP2
chr14316669343166717+3'-UTR4.87472400.00000K562METAP2
chr14316771243167720+3'-UTR4.22177400.00000K562PABPC4
chr14314818743148213+5'-UTR3.6873037.00212K562YBX3
chr14314814943148166+5'-UTR4.6064986.18040K562METAP2
chr14314816643148215+5'-UTR4.65408400.00000K562METAP2
chr14314812443148149+5'-UTR4.73769400.00000K562METAP2
chr14314816743148187+5'-UTR3.2959843.15684K562YBX3
chr14316259043162615+CDS3.7549179.22643K562METAP2
chr14316237843162429+CDS3.0072535.71251K562YBX3
chr14316231243162314+CDS,intron-Proximal4.0458325.76800K562LIN28B
chr14316259743162648+CDS,intron-Proximal3.001835.76569HepG2PRPF8
chr14315914443159213+CDS,intron-Proximal4.463796.19659HepG2AQR
chr14316231243162346+CDS,intron-Proximal3.0468942.79199K562UCHL5
chr14314833743148357+CDS3.3953435.48463K562YBX3
chr14316186943161895+CDS,intron-Distal,intron-Proximal3.026889.23360HepG2BCLAF1
chr14314913643149179+CDS,intron-Distal,intron-Proximal4.9617321.79450HepG2PRPF8
chr14316192243161956+CDS,intron-Distal3.1616643.56228K562UCHL5
chr14314830943148319+CDS3.8812324.14240K562YBX3
chr14316258343162590+CDS4.0589254.60361K562METAP2
chr14314839743148399+CDS3.8806937.71919K562METAP2
chr14314892243148960+CDS,intron-Distal5.411835.81375HepG2XPO5
chr14314833243148362+CDS3.006613.09950HepG2IGF2BP3
chr14316195243161959+CDS,intron-Distal4.1788724.50342K562LIN28B
chr14316194143161959+CDS,intron-Distal3.0655514.06334HepG2BCLAF1
chr14314831943148335+CDS3.3711137.44495K562YBX3
chr14314830743148317+CDS3.462018.94900HepG2YBX3
chr14314907343149080+CDS,intron-Proximal3.6250336.63776K562METAP2
chr14314913043149174+CDS,intron-Distal,intron-Proximal4.493248.28249HepG2AQR
chr14314912543149136+CDS,intron-Proximal3.139676.37635K562CPSF6
chr14316285343162861+CDS3.7420374.24791K562METAP2
chr14314839143148410+CDS,intron-Proximal4.146719.39957HepG2PRPF8
chr14316240743162413+CDS3.4226230.96373K562METAP2
chr14316192843161952+CDS,intron-Distal4.2433623.65416K562LIN28B
chr14314854843148721+CDS,intron-Distal4.039063.11802K562HNRNPK
chr14316195643161959+CDS,intron-Distal3.0743737.60298K562UCHL5
chr14316186343161902+CDS,intron-Distal,intron-Proximal3.106495.54603HepG2AQR
chr14314831843148332+CDS3.956433.63953HepG2IGF2BP3
chr14314833043148364+CDS4.76188400.00000K562METAP2
chr14314831943148330+CDS4.8907073.13008K562METAP2
chr14316231443162350+CDS3.9177826.60260K562LIN28B
chr14316285043162852+CDS,intron-Proximal3.7211771.84829K562METAP2
chr14316662243166683+CDS5.62727400.00000K562METAP2
chr14315914943159208+CDS,intron-Proximal3.784526.18341HepG2PRPF8
chr14315933643159376+intron-Distal3.277895.01300K562RBFOX2
chr14316181343161843+intron-Distal,intron-Proximal3.415598.64789K562KHSRP
chr14316201843162064+intron-Distal,intron-Proximal3.007337.91618K562KHSRP
chr14316503443165101+intron-Distal3.768513.49896K562KHDRBS1
chr14315925143159309+intron-Distal,intron-Proximal4.937407.61377K562TIA1
chr14315145643151528+intron-Distal3.539135.20123K562KHSRP
chr14314917743149234+intron-Distal,intron-Proximal3.152629.43119K562PRPF8
chr14315684643157045+intron-Distal3.156693.40206HepG2HNRNPC
chr14316221143162246+intron-Distal,intron-Proximal4.5172714.09945K562KHSRP
chr14316274143162775+intron-Distal,intron-Proximal3.455464.52210K562KHSRP
chr14314916343149215+intron-Distal,intron-Proximal4.099697.43035HepG2EFTUD2
chr14314916543149216+intron-Distal,intron-Proximal4.036084.95583K562RBM22
chr14315335043153401+intron-Distal3.652723.84532K562XRCC6
chr14316199743162018+intron-Distal,intron-Proximal3.343758.11912K562KHSRP
chr14315090443150935+intron-Distal3.261093.72904K562EXOSC5
chr14315933143159381+intron-Distal3.4954011.02335K562KHSRP
chr14314914343149204+intron-Distal,intron-Proximal4.068744.37625HepG2RBM22
chr14315921843159321+intron-Distal,intron-Proximal3.995823.31824HepG2TIAL1
chr14315930943159362+intron-Distal3.460114.01547K562TIA1
chr14314914143149179+intron-Distal,intron-Proximal4.2348214.59020K562AQR
chr14315057543150647+intron-Distal3.397454.28420HepG2HNRNPM
chr14314913743149141+intron-Distal,intron-Proximal4.0538312.16228K562AQR
chr14316103243161157+intron-Distal4.383323.16986HepG2QKI
chr14316040143160447+intron-Distal3.422436.80241K562KHSRP
chr14316261843162658+intron-Proximal6.0379612.46873K562AQR
chr14316673243166754+intron-Proximal4.704129.46915K562AQR
chr14315920843159232+intron-Proximal5.382808.38577HepG2PRPF8
chr14316226543162277+intron-Proximal4.1517815.03571K562KHSRP
chr14316296443163020+intron-Proximal3.763706.42789K562RBM22
chr14316281143162846+intron-Proximal4.3631813.11193K562SF3B4
chr14314841743148445+intron-Proximal4.163818.13013K562AQR
chr14314846443148487+intron-Proximal4.176803.70131HepG2PRPF8
chr14314841043148449+intron-Proximal4.8253314.13178HepG2PRPF8
chr14316224643162265+intron-Proximal4.3443118.57515K562KHSRP
chr14316227743162300+intron-Proximal3.035768.86022K562KHSRP
chr14316640243166440+intron-Proximal6.0369313.04469K562SF3B4
chr14316644143166446+intron-Proximal4.0891112.11249K562U2AF2
chr14316225643162304+intron-Proximal4.356659.95582K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for YBX1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YBX1 is not available on ENCORE database.

  • 132 RBPs can affect the levels of YBX1.  








The Knockdown/knockout RNA-Seq assay for YBX1 is not available on ENCORE database.





132 RBPs can affect the gene expression of YBX1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YBX1ENSG00000065978.1316941.1131021995.73590-0.376703.358302.32460HepG2ABCF1
YBX1ENSG00000065978.139087.8747010899.95150-0.262305.813804.99580HepG2ACO1
YBX1ENSG00000065978.1312378.180609837.670000.331303.073702.02600HepG2ADAR
YBX1ENSG00000065978.1313116.8000015852.18400-0.273301.733101.30200HepG2AKAP1
YBX1ENSG00000065978.138064.5297010950.41830-0.4413012.3175010.85420HepG2AKAP8L
YBX1ENSG00000065978.1310377.5710013116.30610-0.337902.909002.10610HepG2ASCC1
YBX1ENSG00000065978.135270.652908918.21240-0.7588011.623609.95080HepG2BCLAF1
YBX1ENSG00000065978.1315988.8439022040.72640-0.463106.571605.69600HepG2BOP1
YBX1ENSG00000065978.1314263.0910016727.34980-0.229902.759001.98800HepG2CALR
YBX1ENSG00000065978.1320423.7134026012.84280-0.349002.278101.40200HepG2CCAR1
YBX1ENSG00000065978.139419.7896012461.40840-0.403704.130703.19700HepG2CIRBP
YBX1ENSG00000065978.138397.0301010896.68760-0.3759013.1368011.90690HepG2CKAP4
YBX1ENSG00000065978.133956.800806065.51920-0.616304.270803.31500HepG2CNOT7
YBX1ENSG00000065978.1316277.5425020234.40160-0.313903.041202.32480HepG2CPSF6
YBX1ENSG00000065978.1313573.4794015342.49810-0.176702.116701.54240HepG2CELF1
YBX1ENSG00000065978.1313215.8354016495.71060-0.319809.972508.70390HepG2DAZAP1
YBX1ENSG00000065978.138773.4005010102.27090-0.203502.573301.45740HepG2DDX1
YBX1ENSG00000065978.135664.871109679.85700-0.7729016.7594015.26150HepG2DDX21
YBX1ENSG00000065978.136739.7583015185.09600-1.1719026.6015024.87250HepG2DDX3X
YBX1ENSG00000065978.136647.0982010092.06120-0.602407.240106.05730HepG2DDX55
YBX1ENSG00000065978.137194.416709554.21420-0.409305.165403.85200HepG2DHX30
YBX1ENSG00000065978.138103.8147010428.06840-0.363808.961307.88030HepG2DKC1
YBX1ENSG00000065978.137901.336909905.65960-0.326202.990302.26360HepG2DNAJC21
YBX1ENSG00000065978.138313.503609819.09870-0.240103.238302.54250HepG2DNAJC2
YBX1ENSG00000065978.137322.3927012539.80610-0.7761012.4436011.24450HepG2EIF2S1
YBX1ENSG00000065978.138229.4974010290.20800-0.322402.600701.72100HepG2EIF3D
YBX1ENSG00000065978.136860.5382013857.85010-1.0143017.2066015.61920HepG2EIF4A3
YBX1ENSG00000065978.1312661.5435018197.92160-0.5233018.7463017.41450HepG2ETF1
YBX1ENSG00000065978.138968.8391010650.40570-0.247902.465101.67550HepG2EWSR1
YBX1ENSG00000065978.1317628.8453022210.92120-0.333302.296401.59220HepG2FIP1L1
YBX1ENSG00000065978.136508.709608399.80140-0.368003.500802.08220HepG2FKBP4
YBX1ENSG00000065978.137651.6295012970.47920-0.7614010.941809.66190HepG2G3BP1
YBX1ENSG00000065978.1311379.3749013770.05460-0.275102.165501.38300HepG2G3BP2
YBX1ENSG00000065978.136713.285608985.69750-0.420604.219602.96150HepG2GNB2L1
YBX1ENSG00000065978.1311659.2251022936.76100-0.9762018.2862016.79020HepG2GPKOW
YBX1ENSG00000065978.138403.4545010405.79050-0.308306.406404.99860HepG2HDGF
YBX1ENSG00000065978.136530.3540010000.56850-0.6148010.838909.68750HepG2HNRNPA1
YBX1ENSG00000065978.1311581.2153015160.62960-0.388509.512807.97650HepG2HNRNPA2B1
YBX1ENSG00000065978.138915.4509011124.08550-0.319303.480002.70850HepG2HNRNPC
YBX1ENSG00000065978.1314097.6517018228.76010-0.370809.070007.86800HepG2HNRNPF
YBX1ENSG00000065978.1317442.1340013134.193100.409104.905203.99610HepG2HNRNPK
YBX1ENSG00000065978.1311470.6621015025.95310-0.3895015.3204013.84490HepG2HNRNPL
YBX1ENSG00000065978.1313737.2700021889.01970-0.6721011.018909.86530HepG2HNRNPLL
YBX1ENSG00000065978.1312750.5022017950.19530-0.493409.392708.13030HepG2IGF2BP1
YBX1ENSG00000065978.139088.1595013184.14650-0.536706.461705.46970HepG2IGF2BP2
YBX1ENSG00000065978.136748.4051013987.20490-1.0515021.6339019.88880HepG2MAGOH
YBX1ENSG00000065978.1311253.9899014065.43560-0.321702.337301.75470HepG2MATR3
YBX1ENSG00000065978.1312136.2721017978.29990-0.5669010.835609.34670HepG2MSI2
YBX1ENSG00000065978.1313590.4993022325.06930-0.716106.701105.15570HepG2MTPAP
YBX1ENSG00000065978.136933.8467014396.71150-1.0540020.8061019.17040HepG2NCBP2
YBX1ENSG00000065978.1313119.2474016357.17920-0.318204.755603.75610HepG2NOL12
YBX1ENSG00000065978.1316181.6454019409.17230-0.262402.407801.70810HepG2NSUN2
YBX1ENSG00000065978.136070.7022012821.00870-1.0786022.1892020.19910HepG2PABPC4
YBX1ENSG00000065978.1310312.1148013723.80140-0.4123011.9424010.82360HepG2PCBP1
YBX1ENSG00000065978.137569.6873011356.46690-0.585204.367003.08080HepG2PCBP2
YBX1ENSG00000065978.1317774.0400015185.536300.227003.757902.86980HepG2PRPF4
YBX1ENSG00000065978.135964.823207783.74800-0.384003.820102.89060HepG2PRPF8
YBX1ENSG00000065978.138464.5124013964.32320-0.7222032.8898031.42420HepG2PTBP1
YBX1ENSG00000065978.1310758.7513015614.70290-0.537409.294408.28960HepG2PUF60
YBX1ENSG00000065978.1314328.4126016576.09890-0.210205.030204.27870HepG2PUM1
YBX1ENSG00000065978.137700.2092016563.74090-1.1051046.8739044.42170HepG2PUM2
YBX1ENSG00000065978.137308.4645011102.17670-0.6032027.2222025.66340HepG2PUS1
YBX1ENSG00000065978.139796.5334015124.04340-0.6265018.0880016.68650HepG2QKI
YBX1ENSG00000065978.1318062.5481022138.79750-0.293603.910802.91160HepG2RBM15
YBX1ENSG00000065978.1313704.8546015210.05390-0.150301.737701.30270HepG2RBM22
YBX1ENSG00000065978.137539.9098013725.91430-0.8643024.5456022.65620HepG2RBM25
YBX1ENSG00000065978.1311533.7380015541.08220-0.4302013.1835012.16240HepG2NELFE
YBX1ENSG00000065978.139669.4241014474.16810-0.5820023.7218022.22980HepG2RECQL
YBX1ENSG00000065978.1310905.4513019635.78680-0.8484020.1084018.61090HepG2RPLP0
YBX1ENSG00000065978.137117.4676010766.73960-0.597104.404303.21950HepG2RPS10
YBX1ENSG00000065978.138224.0871010013.13750-0.284003.191402.53760HepG2RPS19
YBX1ENSG00000065978.136669.110309790.77190-0.553908.067606.74740HepG2RPS2
YBX1ENSG00000065978.135664.552207699.59430-0.442804.281803.32660HepG2RRP9
YBX1ENSG00000065978.1312174.904109840.796400.307003.451202.74580HepG2SAFB2
YBX1ENSG00000065978.1312612.6559021665.51110-0.7805016.8335015.25040HepG2SF3B1
YBX1ENSG00000065978.138722.4294014538.94610-0.7371036.9266035.22300HepG2SF3B4
YBX1ENSG00000065978.1313382.1812014972.89180-0.162002.865702.15240HepG2SLBP
YBX1ENSG00000065978.1313678.4214024106.78580-0.817507.991806.66320HepG2SNRNP70
YBX1ENSG00000065978.1313398.6767017179.12340-0.3586011.5002010.66750HepG2SRFBP1
YBX1ENSG00000065978.139886.8526015175.39650-0.6182030.4035029.20780HepG2SRSF1
YBX1ENSG00000065978.1313134.9198015417.72670-0.231203.916103.19420HepG2SRSF5
YBX1ENSG00000065978.1311956.5608017908.91110-0.5829021.9136020.30380HepG2SRSF7
YBX1ENSG00000065978.137019.8394012345.89380-0.8145046.3998044.69380HepG2SRSF9
YBX1ENSG00000065978.138765.7601014915.41930-0.7669041.7535040.32930HepG2SSB
YBX1ENSG00000065978.1313571.9791017533.79010-0.3695012.6799011.51320HepG2SUCLG1
YBX1ENSG00000065978.1312319.0223014999.79310-0.284102.945401.97720HepG2SUPT6H
YBX1ENSG00000065978.135958.1067010046.06740-0.7537011.3767010.16060HepG2SUPV3L1
YBX1ENSG00000065978.1314769.5342021336.36860-0.530708.059806.90870HepG2TARDBP
YBX1ENSG00000065978.138373.4096012533.56620-0.5819012.2154010.49030HepG2TIA1
YBX1ENSG00000065978.135222.6209010736.50960-1.0397032.5028031.13050HepG2TIAL1
YBX1ENSG00000065978.1313261.6080010833.702400.291606.349805.55830HepG2TRIM56
YBX1ENSG00000065978.1310994.3496016148.20250-0.554606.295805.00050HepG2UBE2L3
YBX1ENSG00000065978.1314687.2247018075.62280-0.299507.667406.59990HepG2UPF1
YBX1ENSG00000065978.137168.343809198.00450-0.359702.520001.56480HepG2UPF2
YBX1ENSG00000065978.1321269.1923017451.314500.285307.162306.27510HepG2UTP3
YBX1ENSG00000065978.1310093.4725014986.39210-0.5702025.0267023.36910HepG2ZC3H8
YBX1ENSG00000065978.1316242.8678019879.73510-0.291509.936109.06020HepG2ZNF622
YBX1ENSG00000065978.1349971.3304034971.942800.5148021.2402019.78130K562AGGF1
YBX1ENSG00000065978.1348037.4317038429.949600.321803.684802.51120K562AKAP8
YBX1ENSG00000065978.1355243.5066036390.155200.6022011.302409.85810K562AKAP8L
YBX1ENSG00000065978.1326651.1362036345.33410-0.447605.793204.99810K562AQR
YBX1ENSG00000065978.1346264.6890038182.530600.276904.599003.38730K562ATP5C1
YBX1ENSG00000065978.1316271.9913020648.57560-0.343707.548005.93620K562BCLAF1
YBX1ENSG00000065978.1324590.1102038392.21030-0.642705.275104.05920K562BOP1
YBX1ENSG00000065978.1334352.9438051354.43620-0.580103.831102.54450K562CNOT7
YBX1ENSG00000065978.1342896.6376052472.74550-0.290705.952104.28620K562CPEB4
YBX1ENSG00000065978.1326551.3555040823.31610-0.620607.287906.00750K562CPSF6
YBX1ENSG00000065978.1312796.5590015665.02500-0.291804.975003.49450K562CSTF2
YBX1ENSG00000065978.1353714.0931062603.39170-0.220902.632401.68180K562CELF1
YBX1ENSG00000065978.1352310.3936039156.761700.417709.922508.05260K562DKC1
YBX1ENSG00000065978.1325393.7895033200.21730-0.386708.881407.70470K562EIF2S2
YBX1ENSG00000065978.1317821.9402014624.729900.285104.208403.23540K562EIF3G
YBX1ENSG00000065978.1312676.9484016385.83290-0.370204.382403.35090K562EIF4A3
YBX1ENSG00000065978.1317138.3859014303.118200.260803.786802.24050K562EWSR1
YBX1ENSG00000065978.1324531.0378029987.40870-0.289703.447202.01260K562EXOSC5
YBX1ENSG00000065978.1321111.2640041534.08140-0.9763015.1709013.08330K562FMR1
YBX1ENSG00000065978.1320919.8024035202.71950-0.7508010.747308.82410K562FTO
YBX1ENSG00000065978.1323026.6531017040.564700.4342011.2731010.13780K562FXR1
YBX1ENSG00000065978.1314326.2771018644.13110-0.380103.592501.93520K562GEMIN5
YBX1ENSG00000065978.1329682.0116040273.16850-0.4402010.123108.06290K562GLRX3
YBX1ENSG00000065978.1322965.3570038977.32520-0.7632010.498008.93280K562GPKOW
YBX1ENSG00000065978.1334039.8440044243.03130-0.378205.528704.45730K562GRSF1
YBX1ENSG00000065978.1317229.0301031959.29970-0.8914021.1245019.55330K562HNRNPC
YBX1ENSG00000065978.1349972.9913035335.136300.499903.929402.80620K562HNRNPM
YBX1ENSG00000065978.1322757.6269029831.06490-0.390506.827705.42060K562HNRNPU
YBX1ENSG00000065978.1349566.2320038618.126500.360005.514804.26120K562KIF1C
YBX1ENSG00000065978.1321314.6100033278.87840-0.642806.643305.12650K562KRR1
YBX1ENSG00000065978.1346607.2286036967.798600.334204.037902.66360K562MAK16
YBX1ENSG00000065978.1353405.6497043262.185000.303803.826802.72870K562MBNL1
YBX1ENSG00000065978.1324075.8494038045.75240-0.660107.843606.33360K562METAP2
YBX1ENSG00000065978.1341814.9697054269.61570-0.376104.356302.94090K562MSI2
YBX1ENSG00000065978.1329041.2843042341.83630-0.5440024.4832022.43370K562MTPAP
YBX1ENSG00000065978.1344810.0660030323.739800.563305.414904.03640K562NAA15
YBX1ENSG00000065978.1334720.9797047046.41660-0.4383031.8648029.79730K562NSUN2
YBX1ENSG00000065978.1335300.5459049336.83560-0.483002.750301.52060K562PABPC1
YBX1ENSG00000065978.1330283.0588038143.78640-0.332902.813901.97440K562PCBP3
YBX1ENSG00000065978.1324049.8137029256.81100-0.282703.723802.78890K562POLR2G
YBX1ENSG00000065978.1323050.7216018096.404900.349003.670102.80580K562PRPF8
YBX1ENSG00000065978.1322346.1239028654.04420-0.358704.669403.45030K562PSIP1
YBX1ENSG00000065978.1323227.0283019028.108200.287603.412902.68400K562PTBP1
YBX1ENSG00000065978.1350296.6568059087.95080-0.232402.906401.81020K562PUM1
YBX1ENSG00000065978.1340631.2423057894.15900-0.5108015.4416013.22330K562PUM2
YBX1ENSG00000065978.1365324.3040036087.167800.8560014.4719013.26790K562PUS1
YBX1ENSG00000065978.1354360.3161035163.067200.6284020.1333018.49220K562RBM15
YBX1ENSG00000065978.1320321.3304026139.17090-0.363205.541604.13120K562RCC2
YBX1ENSG00000065978.1314510.7725018432.94190-0.345202.646701.85040K562RPS19
YBX1ENSG00000065978.1333166.5016046421.56630-0.4851014.2750012.53830K562SF3A3
YBX1ENSG00000065978.1324649.2482037064.79540-0.588506.331004.82680K562SF3B1
YBX1ENSG00000065978.1317625.1985015100.119100.223002.089401.34770K562SF3B4
YBX1ENSG00000065978.1317858.9569022674.91140-0.344403.410301.99480K562SLBP
YBX1ENSG00000065978.1352967.5278033724.929600.651202.881401.61960K562SNRNP200
YBX1ENSG00000065978.1340953.8638047559.78500-0.215705.676904.39720K562SRPK2
YBX1ENSG00000065978.1314552.3888018654.28690-0.358305.169504.20730K562SRSF1
YBX1ENSG00000065978.1313004.9430017520.72480-0.430004.097302.84110K562SUPV3L1
YBX1ENSG00000065978.1336723.3781029346.413300.323404.735603.65620K562SYNCRIP
YBX1ENSG00000065978.1319958.1774027560.87490-0.465603.110502.11400K562TIAL1
YBX1ENSG00000065978.1314795.7665018543.78290-0.325802.953001.89370K562UCHL5
YBX1ENSG00000065978.1329278.2305049884.24690-0.7688046.8349044.34620K562UPF1
YBX1ENSG00000065978.1334029.0093044406.83450-0.384003.539802.17610K562UTP3
YBX1ENSG00000065978.1329958.2700042684.48230-0.510809.514307.84980K562WDR3
YBX1ENSG00000065978.1315265.3982018883.15460-0.306802.637101.46360K562XRN2
YBX1ENSG00000065978.1333905.7506040945.24710-0.272202.709101.85680K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YBX1 is not available on ENCORE database.





15 RBPs can affect the splicing of YBX1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEYBX1ENSG00000065978.13chr1+431618694316194143159160431591944316231243162615-0.105000.000000.00000excludedK562FTO
SEYBX1ENSG00000065978.13chr1+431628504316293343161869431619594316645143166717-0.054000.000000.00000excludedK562SUPV3L1
SEYBX1ENSG00000065978.13chr1+431618694316194143159160431591944316231243162615-0.119000.000000.00000excludedK562SF3B1
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316261543159160431591944316285043162933-0.091000.001870.088402includedK562LARP4
MXEYBX1ENSG00000065978.13chr1+43161869431619594316231243162615431591604315919443162850431629330.108000.000000.000271includedHepG2FTO
MXEYBX1ENSG00000065978.13chr1+43161869431619594316285043162933431591604315919443166451431667170.124000.001920.036731includedHepG2FTO
MXEYBX1ENSG00000065978.13chr1+4316186943161959431628504316293343159160431591944316645143166717-0.185000.000190.005532includedK562DROSHA
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316261543159160431591944316285043162933-0.145000.000000.000032includedK562DROSHA
MXEYBX1ENSG00000065978.13chr1+4316186943161959431625274316261543159160431591944316285043162933-0.151000.000000.000052includedK562DROSHA
MXEYBX1ENSG00000065978.13chr1+4316231243162533431625794316261543161884431619594316285043162933-0.091000.000030.001312includedK562DROSHA
MXEYBX1ENSG00000065978.13chr1+4316186943161959431628504316293343159160431591944316645143166717-0.115000.000000.000062includedK562LIN28B
MXEYBX1ENSG00000065978.13chr1+43159075431591944316186943161959431488264314913743162312431626150.053000.000000.000001includedK562AQR
MXEYBX1ENSG00000065978.13chr1+43159115431591944316186943161959431488264314913743162312431626150.059000.000000.000001includedK562AQR
MXEYBX1ENSG00000065978.13chr1+43159079431591944316186943161959431488264314913743162312431626150.053000.000000.000001includedK562AQR
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316253343159160431591944316285043162882-0.053000.000000.000002includedK562AQR
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316261543159160431591944316285043162933-0.068000.004930.086562includedK562TARDBP
MXEYBX1ENSG00000065978.13chr1+4316186943161959431628504316293343159160431591944316645143166717-0.101000.000010.001142includedK562LARP7
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316261543159160431591944316285043162933-0.073000.001090.034792includedHepG2XRN2
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316261543159160431591944316285043162933-0.161000.000880.007332includedHepG2U2AF2
MXEYBX1ENSG00000065978.13chr1+4316186943161959431628504316293343159160431591944316645143166717-0.152000.003450.048872includedHepG2HNRNPUL1
MXEYBX1ENSG00000065978.13chr1+4316186943161959431628504316293343159160431591944316645143166717-0.120000.000000.000102includedK562PHF6
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316261543159160431591944316285043162933-0.072000.002690.069962includedHepG2HNRNPC
MXEYBX1ENSG00000065978.13chr1+4316186943161959431628504316293343159160431591944316645143166717-0.080000.000530.012252includedK562HNRNPC
MXEYBX1ENSG00000065978.13chr1+4316186943161959431628504316293343159160431591944316645143166717-0.083000.000250.049592includedK562LSM11
MXEYBX1ENSG00000065978.13chr1+4316186943161959431623124316261543159160431591944316285043162933-0.112000.000140.006132includedK562HNRNPUL1
MXEYBX1ENSG00000065978.13chr1+4316186943161959431625274316261543159160431591944316285043162933-0.114000.000250.009342includedK562HNRNPUL1
MXEYBX1ENSG00000065978.13chr1+4316186943161959431624134316261543159160431591944316285043162933-0.111000.000170.006842includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for YBX1 is not avaliable on ENCORE database.