TTR

General Information

Gene Name       : TTR
Gene ID             : ENSG00000118271.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TTR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TTRENSG00000118271.100.000.000.00ENCSR000AEF
HepG2TTRENSG00000118271.10192.68209.32201.00ENCSR985KAT
K562TTRENSG00000118271.100.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TTR is not avaliable on ENCORE database.



Proteins bound to RNA
  • TTR RNA is bound by 7 proteins.  







eCLIP assay for TTR is not avaliable on ENCORE database.





7 proteins are bound to TTR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr182917863929178681+3'-UTR3.7147615.16046HepG2RPS3
chr182917856829178653+3'-UTR,CDS3.1967527.85708HepG2SND1
chr182917870129178763+3'-UTR4.7137720.60198HepG2LARP4
chr182917870329178758+3'-UTR4.559335.69035HepG2TIAL1
chr182917862729178693+3'-UTR,CDS3.2040219.72363HepG2LARP4
chr182917871229178769+3'-UTR3.469153.47314HepG2G3BP1
chr182917185329171906+5'-UTR,CDS3.199083.71734HepG2DDX3X
chr182917285829172883+CDS,intron-Proximal3.308515.50457HepG2DDX3X
chr182917513929175218+CDS3.2572714.84695HepG2LARP4
chr182917294729172990+CDS,intron-Proximal4.6880910.17410HepG2RPS3
chr182917519329175218+CDS3.4869515.05990HepG2SND1
chr182917186729171902+CDS3.231334.71643HepG2LARP4
chr182917517229175193+CDS3.5936511.19962HepG2SND1
chr182917192629171935+CDS,intron-Proximal3.572529.20205HepG2DDX3X
chr182917517729175218+CDS3.930289.59666HepG2RPS3
chr182917508229175134+CDS,intron-Proximal6.9925530.51112HepG2SND1
chr182917285829172887+CDS,intron-Proximal5.2358014.12277HepG2RPS3
chr182917289629172944+CDS5.0985710.12887HepG2SND1
chr182917295329172990+CDS,intron-Proximal6.6884323.34247HepG2SND1
chr182917853029178568+CDS,intron-Proximal3.6689021.77945HepG2SND1
chr182917856129178634+CDS3.902786.74978HepG2PCBP1
chr182917190629171926+CDS3.514279.07019HepG2DDX3X
chr182917285829172876+CDS,intron-Proximal3.037054.95043HepG2LARP4
chr182917189729171935+CDS,intron-Proximal4.0100212.29491HepG2RPS3
chr182917852929178554+CDS,intron-Proximal3.7439312.59846HepG2LARP4
chr182917508229175156+CDS,intron-Proximal3.612447.27285HepG2G3BP1
chr182917855429178590+CDS3.6855719.51397HepG2LARP4
chr182917859029178627+CDS3.0211416.35522HepG2LARP4
chr182917508229175112+CDS,intron-Proximal4.476717.61854HepG2RPS3
chr182917190229171935+CDS,intron-Proximal3.130068.04946HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TTR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TTR is not available on ENCORE database.

  • 155 RBPs can affect the levels of TTR.  








The Knockdown/knockout RNA-Seq assay for TTR is not available on ENCORE database.





155 RBPs can affect the gene expression of TTR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TTRENSG00000118271.55328.663802679.903100.9915012.024908.65550HepG2AARS
TTRENSG00000118271.51182.325601695.05930-0.519705.824604.32210HepG2AATF
TTRENSG00000118271.52381.858905811.96330-1.2869013.5172011.70250HepG2ABCF1
TTRENSG00000118271.52421.496204651.90700-0.9419050.1640048.37840HepG2ACO1
TTRENSG00000118271.5821.192009686.39610-3.56020143.07810140.37030HepG2AKAP1
TTRENSG00000118271.53150.482704673.93560-0.5691016.6575014.99000HepG2AKAP8L
TTRENSG00000118271.55813.703008014.82950-0.463204.710503.69820HepG2ASCC1
TTRENSG00000118271.58471.432805241.920300.692409.709807.28000HepG2ATP5C1
TTRENSG00000118271.58254.023305485.575300.5894014.0281012.69310HepG2AUH
TTRENSG00000118271.59913.300502375.821602.0608014.4388012.62880HepG2BCLAF1
TTRENSG00000118271.55288.995802158.406801.2929029.8116028.20790HepG2BOP1
TTRENSG00000118271.56205.282304352.892100.511404.773203.17540HepG2BUD13
TTRENSG00000118271.57357.034103191.660101.2047049.0280046.62160HepG2CALR
TTRENSG00000118271.51516.950905071.84910-1.7413028.0031025.15160HepG2CCAR1
TTRENSG00000118271.512567.148107614.591300.7227011.9210010.42790HepG2CIRBP
TTRENSG00000118271.53785.583401981.411100.933908.837207.66940HepG2CPSF6
TTRENSG00000118271.57155.015004784.309700.580509.767307.83660HepG2CPSF7
TTRENSG00000118271.5600.707801688.90390-1.4914035.6397032.81420HepG2CSTF2
TTRENSG00000118271.53834.507101735.954601.1432016.2287012.81920HepG2CSTF2T
TTRENSG00000118271.55365.558103669.577200.548006.905005.97660HepG2CELF1
TTRENSG00000118271.57849.664603944.440900.9927031.7512029.76880HepG2DAZAP1
TTRENSG00000118271.52624.369204302.44290-0.7132027.2618025.32350HepG2DDX19B
TTRENSG00000118271.53433.842802126.279200.6914018.3354015.88840HepG2DDX1
TTRENSG00000118271.52221.615101829.955300.279702.605801.72150HepG2DDX24
TTRENSG00000118271.51548.017502515.36050-0.700306.069704.24870HepG2DDX27
TTRENSG00000118271.53942.982702036.521000.9531015.8973013.23150HepG2DDX28
TTRENSG00000118271.511279.094209279.156700.281502.077601.52700HepG2DDX3X
TTRENSG00000118271.57625.143502191.525901.7987034.5087031.02480HepG2DDX47
TTRENSG00000118271.52090.989102688.31240-0.362502.474801.73870HepG2DDX55
TTRENSG00000118271.54329.728802250.078800.944207.450805.88960HepG2DDX59
TTRENSG00000118271.58178.648704388.133800.8982014.0279011.98990HepG2DDX5
TTRENSG00000118271.54702.853107970.22930-0.761109.766708.68190HepG2DDX6
TTRENSG00000118271.53826.712702010.925100.9281012.3356010.46620HepG2DHX30
TTRENSG00000118271.53061.568704450.66810-0.5398015.0989013.78210HepG2DKC1
TTRENSG00000118271.53157.234102084.909000.5986014.0585012.57020HepG2DNAJC21
TTRENSG00000118271.53853.829902066.634700.8989049.1558046.67500HepG2DNAJC2
TTRENSG00000118271.51443.953702412.13920-0.7403010.139508.51510HepG2EEF2
TTRENSG00000118271.53217.253702010.900700.677908.729206.76210HepG2EFTUD2
TTRENSG00000118271.53258.338101721.933800.9200011.420209.34220HepG2AGO1
TTRENSG00000118271.523845.461307662.727301.6377021.2636019.72690HepG2EIF2S1
TTRENSG00000118271.53004.424804407.39610-0.552806.078504.40020HepG2EIF2S2
TTRENSG00000118271.51233.651901765.69040-0.517306.842805.26980HepG2EIF3G
TTRENSG00000118271.55997.344408244.65480-0.459103.197402.46040HepG2EIF4B
TTRENSG00000118271.53497.030805033.37170-0.525405.395403.91790HepG2ESF1
TTRENSG00000118271.53829.163504545.92860-0.247502.239601.48890HepG2EWSR1
TTRENSG00000118271.53481.468401750.058100.9922018.3030015.41590HepG2FAM120A
TTRENSG00000118271.58380.100901781.700302.23360123.91000120.24640HepG2FASTKD2
TTRENSG00000118271.52164.695505868.27890-1.4388017.1293015.49900HepG2FIP1L1
TTRENSG00000118271.53754.910802237.615900.746709.999207.86740HepG2FKBP4
TTRENSG00000118271.53451.539305185.67230-0.587309.816708.38320HepG2FUBP3
TTRENSG00000118271.54057.684608543.33930-1.0741022.8679021.09220HepG2FXR1
TTRENSG00000118271.55456.135107925.77930-0.538705.705104.76370HepG2G3BP1
TTRENSG00000118271.56181.298208413.47380-0.444804.735003.55600HepG2G3BP2
TTRENSG00000118271.5794.418701743.46820-1.1340020.5392018.37470HepG2GEMIN5
TTRENSG00000118271.51295.818803227.87150-1.316708.897607.04740HepG2GNB2L1
TTRENSG00000118271.5378.049202245.74400-2.5705013.7660012.44260HepG2GPKOW
TTRENSG00000118271.53840.069504441.36540-0.209902.819401.83370HepG2HDGF
TTRENSG00000118271.57488.571301360.067702.4609063.3359058.97850HepG2HNRNPA0
TTRENSG00000118271.51447.512602104.88450-0.540204.013403.25600HepG2HNRNPA1
TTRENSG00000118271.54800.083403625.659800.404703.708102.65090HepG2HNRNPA2B1
TTRENSG00000118271.52022.363301394.092000.536603.788701.99910HepG2HNRNPD
TTRENSG00000118271.56744.916103334.709501.0161052.9616050.62530HepG2HNRNPF
TTRENSG00000118271.52963.932408024.21700-1.4368046.3807043.84260HepG2HNRNPK
TTRENSG00000118271.512493.578102143.185602.54330122.97600119.91390HepG2HNRNPLL
TTRENSG00000118271.52266.546904047.72610-0.836609.836908.23550HepG2HNRNPM
TTRENSG00000118271.54232.549102325.857200.8637037.4917035.48670HepG2HNRNPU
TTRENSG00000118271.56398.566503283.736400.9623021.9542020.14890HepG2IGF2BP1
TTRENSG00000118271.55151.408208056.58760-0.645208.713307.58760HepG2IGF2BP2
TTRENSG00000118271.54432.357207559.92960-0.770302.899501.89330HepG2IGF2BP3
TTRENSG00000118271.53488.017202375.778400.5539020.3116018.53960HepG2ILF2
TTRENSG00000118271.54664.590308103.16500-0.796709.106407.18940HepG2KHSRP
TTRENSG00000118271.54864.945602857.308600.7677010.657007.72750HepG2CCAR2
TTRENSG00000118271.59932.413706109.959000.700902.786901.53620HepG2KRR1
TTRENSG00000118271.52555.405505353.34330-1.0669014.2878012.43620HepG2LARP4
TTRENSG00000118271.55064.337003161.356600.679708.779606.87230HepG2LARP7
TTRENSG00000118271.56484.748603172.706601.031205.251702.97990HepG2LSM11
TTRENSG00000118271.56914.731508546.31700-0.305602.329901.72650HepG2MAGOH
TTRENSG00000118271.53550.778308594.32890-1.2752026.7690024.98200HepG2MATR3
TTRENSG00000118271.53894.377904747.59950-0.285802.395101.63900HepG2MSI2
TTRENSG00000118271.55574.407202186.513501.3501019.4132016.94400HepG2MTPAP
TTRENSG00000118271.55319.527808796.91910-0.7257010.123208.95560HepG2NCBP2
TTRENSG00000118271.511643.566205794.414301.006705.477903.47550HepG2NKRF
TTRENSG00000118271.52640.991303911.36660-0.566603.320802.48660HepG2NOL12
TTRENSG00000118271.53135.604801900.590700.722205.068004.06850HepG2NSUN2
TTRENSG00000118271.59136.555704686.654100.9630019.1595015.59100HepG2NUP35
TTRENSG00000118271.5936.360701470.80200-0.651502.367001.55730HepG2PABPC1
TTRENSG00000118271.56237.519702302.143901.4379035.1638032.84360HepG2PARN
TTRENSG00000118271.510188.976606574.473200.6320024.8183023.30700HepG2PCBP1
TTRENSG00000118271.53304.537702074.470900.6716017.0830015.35170HepG2PPIL4
TTRENSG00000118271.51777.064902734.26540-0.621704.398202.88070HepG2PRPF6
TTRENSG00000118271.53699.120902073.806900.8348013.0481011.47620HepG2PRPF8
TTRENSG00000118271.52051.767703609.66890-0.815003.891501.78550HepG2PSIP1
TTRENSG00000118271.510062.854306689.669400.5889014.2389013.18690HepG2PTBP1
TTRENSG00000118271.55001.223003734.089900.421402.169701.63320HepG2PUF60
TTRENSG00000118271.52570.506803964.30880-0.625003.505602.85370HepG2PUM1
TTRENSG00000118271.52123.663203961.15980-0.899406.019705.04320HepG2PUM2
TTRENSG00000118271.510163.625804738.299401.1009082.9096080.55940HepG2PUS1
TTRENSG00000118271.510308.325307245.296600.5086011.4454010.30270HepG2QKI
TTRENSG00000118271.51804.165302510.01290-0.476402.318201.66940HepG2RAVER1
TTRENSG00000118271.52309.494905263.80290-1.1885017.7660016.68480HepG2RBM22
TTRENSG00000118271.59323.082606575.489400.503603.160202.44430HepG2RBM25
TTRENSG00000118271.52140.794003811.90720-0.832404.638403.33340HepG2RBM27
TTRENSG00000118271.51626.273003095.42000-0.928603.796902.55120HepG2RCC2
TTRENSG00000118271.51344.393607445.04530-2.46930273.25420270.30270HepG2NELFE
TTRENSG00000118271.52517.570306933.89270-1.46160112.28020109.64720HepG2RECQL
TTRENSG00000118271.54363.315002465.556300.823407.498106.00830HepG2RPS10
TTRENSG00000118271.51293.146801905.34390-0.559207.725306.75990HepG2RPS19
TTRENSG00000118271.54116.108301615.289601.3494021.5783019.44210HepG2RPS3A
TTRENSG00000118271.59979.564202051.423402.2823078.0469074.96440HepG2RRP9
TTRENSG00000118271.52519.957802071.252000.282802.516501.89740HepG2SAFB2
TTRENSG00000118271.52009.658201521.101600.401702.592401.32550HepG2SART3
TTRENSG00000118271.55468.229701912.318101.5157046.0129042.80490HepG2SERBP1
TTRENSG00000118271.51628.909903755.33410-1.205004.497602.67240HepG2SF1
TTRENSG00000118271.53297.950305347.23110-0.697205.853404.84790HepG2SF3A3
TTRENSG00000118271.58409.833102121.134301.9871086.9127083.99360HepG2SF3B1
TTRENSG00000118271.56263.969606964.99400-0.153001.995501.48000HepG2SF3B4
TTRENSG00000118271.51859.302003642.05340-0.970002.882401.39880HepG2SFPQ
TTRENSG00000118271.55565.558903581.246700.636007.677606.59800HepG2SLBP
TTRENSG00000118271.55663.380302448.917501.209407.962505.47710HepG2SLTM
TTRENSG00000118271.55140.912702415.385001.0897023.3091021.73770HepG2SMN1
TTRENSG00000118271.53605.386402559.140700.494403.080402.06540HepG2SMNDC1
TTRENSG00000118271.53692.396902442.529800.596105.029602.82320HepG2SND1
TTRENSG00000118271.56032.990103353.736800.847002.799101.48290HepG2SNRNP200
TTRENSG00000118271.51760.936405945.45110-1.7554029.7105028.52080HepG2SRFBP1
TTRENSG00000118271.51847.045407269.87040-1.97670212.75220210.36560HepG2SRSF1
TTRENSG00000118271.51298.661002282.90550-0.813802.747301.75040HepG2SRSF3
TTRENSG00000118271.510294.007003276.243901.65160144.08240141.07450HepG2SRSF7
TTRENSG00000118271.51065.475905914.36190-2.47270278.30230274.97400HepG2SRSF9
TTRENSG00000118271.53417.343205162.37270-0.595205.772705.08380HepG2SSB
TTRENSG00000118271.52302.475006092.69470-1.4039029.7045026.36360HepG2SSRP1
TTRENSG00000118271.52897.050403917.97110-0.435503.211001.88550HepG2STAU1
TTRENSG00000118271.54878.037902345.661001.0562012.3836010.00980HepG2SUB1
TTRENSG00000118271.52399.644304193.12400-0.805205.472204.65180HepG2SUCLG1
TTRENSG00000118271.54990.593103960.997800.333202.735101.79860HepG2SUPT6H
TTRENSG00000118271.53406.751002676.170900.348102.562501.90880HepG2SUPV3L1
TTRENSG00000118271.51340.319206534.23380-2.28540186.65360183.05540HepG2TAF15
TTRENSG00000118271.510934.101702089.843402.38730122.63500119.26590HepG2TARDBP
TTRENSG00000118271.510299.392805984.388600.783204.230902.93000HepG2TBRG4
TTRENSG00000118271.56109.289101793.742001.7679049.1280046.10570HepG2TFIP11
TTRENSG00000118271.53035.821406004.29270-0.9839029.6973027.04020HepG2TIA1
TTRENSG00000118271.54666.449302280.218601.0331052.9790050.93680HepG2TRIM56
TTRENSG00000118271.51025.934301555.97390-0.600905.033002.94340HepG2TROVE2
TTRENSG00000118271.528634.425805018.905002.5122057.8228054.85480HepG2U2AF1
TTRENSG00000118271.53735.488801580.894801.2405027.0493024.80620HepG2UCHL5
TTRENSG00000118271.52084.971504578.37680-1.1348029.5876027.94440HepG2UTP3
TTRENSG00000118271.53867.935101446.768301.4186012.9301010.62360HepG2XPO5
TTRENSG00000118271.53706.395602468.185200.586504.062202.52610HepG2XRCC5
TTRENSG00000118271.51724.528802760.32860-0.678605.660204.17680HepG2XRCC6
TTRENSG00000118271.51700.210502634.39690-0.631807.524706.34290HepG2XRN2
TTRENSG00000118271.57121.625105215.481800.449304.679804.01630HepG2ZNF622
TTRENSG00000118271.50.4794015.35560-5.001403.812102.87660K562MTPAP
TTRENSG00000118271.51.3363017.06840-3.675003.524402.69260K562NSUN2
TTRENSG00000118271.50.0000015.73360-99999.999994.851202.34510K562NUFIP2
TTRENSG00000118271.50.9608016.83190-4.130804.001303.02870K562SF3A3
TTRENSG00000118271.50.0000017.24370-99999.999995.469804.20940K562SRPK2
TTRENSG00000118271.50.7806018.09750-4.535004.518503.62410K562UPF1
TTRENSG00000118271.50.0000015.48630-99999.999994.871803.69340K562WDR3
TTRENSG00000118271.50.9970016.09780-4.013203.870002.88010K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TTR is not available on ENCORE database.






No RBPs affect the alternative splcing events of TTR on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TTR is not avaliable on ENCORE database.