MALAT1

General Information

Gene Name       : MALAT1
Gene ID             : ENSG00000251562.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MALAT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MALAT1ENSG00000251562.8433.28304.95369.12ENCSR000AEF
HepG2MALAT1ENSG00000251562.836.3678.3657.36ENCSR985KAT
K562MALAT1ENSG00000251562.8287.87243.89265.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MALAT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MALAT1 RNA is bound by 6 proteins.  







eCLIP assay for MALAT1 is not avaliable on ENCORE database.





6 proteins are bound to MALAT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116526999965270057+intron-Distal,intron-Proximal3.80300400.00000HepG2KHSRP
chr116526997465269977+intron-Distal3.06417400.00000K562KHSRP
chr116527000365270033+intron-Distal,intron-Proximal3.08388400.00000K562KHSRP
chr116526997765269981+intron-Distal3.26967400.00000K562KHSRP
chr116526999065269992+intron-Distal3.18757400.00000K562KHSRP
chr116526998165269990+intron-Distal3.45335400.00000K562KHSRP
chr116526987865269903+intron-Proximal5.7365759.28156HepG2TIA1
chr116526988365269899+intron-Proximal4.3544216.69734K562SLBP
chr116526992965269937+intron-Proximal3.26403400.00000K562PPIL4
chr116526992265269929+intron-Proximal3.21811400.00000K562PPIL4
chr116527010765270142+intron-Proximal3.04541400.00000K562U2AF2
chr116526990365269940+intron-Proximal5.2256852.25570HepG2TIA1
chr116527109965271129+polyA_site3.040848.51242K562ZC3H8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MALAT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MALAT1 is not available on ENCORE database.

  • 146 RBPs can affect the levels of MALAT1.  








The Knockdown/knockout RNA-Seq assay for MALAT1 is not available on ENCORE database.





146 RBPs can affect the gene expression of MALAT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MALAT1ENSG00000251562.38913.136004642.351100.941009.089107.28860HepG2AATF
MALAT1ENSG00000251562.315253.407608938.377700.7709045.4805043.76640HepG2ACO1
MALAT1ENSG00000251562.35483.468604103.950500.418003.330202.75440HepG2AKAP1
MALAT1ENSG00000251562.312661.965008335.964600.603004.573903.24610HepG2AKAP8
MALAT1ENSG00000251562.37194.505103395.688801.0831022.8302020.87620HepG2ASCC1
MALAT1ENSG00000251562.310518.830508293.519800.342802.832401.41140HepG2ATP5C1
MALAT1ENSG00000251562.314264.624908201.304600.7984035.2173033.26270HepG2AUH
MALAT1ENSG00000251562.310206.735804698.501001.1191011.266209.31620HepG2BCCIP
MALAT1ENSG00000251562.34916.908307222.04040-0.554708.419407.44470HepG2BOP1
MALAT1ENSG00000251562.38382.533206885.034300.283803.221501.89820HepG2BUD13
MALAT1ENSG00000251562.311907.576007831.562600.604408.136206.91190HepG2CALR
MALAT1ENSG00000251562.36644.486408937.04300-0.427606.391605.45600HepG2CKAP4
MALAT1ENSG00000251562.39779.521206797.522600.524702.950702.15800HepG2CNOT7
MALAT1ENSG00000251562.310780.539307568.038700.510306.308004.69370HepG2CPSF7
MALAT1ENSG00000251562.34194.915505682.26720-0.437807.972306.26120HepG2YBX3
MALAT1ENSG00000251562.35446.400207935.64390-0.543003.347502.54560HepG2DAZAP1
MALAT1ENSG00000251562.36592.660908266.99820-0.326502.972702.10990HepG2DDX19B
MALAT1ENSG00000251562.37059.979105116.015800.464503.392302.64660HepG2DDX21
MALAT1ENSG00000251562.37209.371203931.304900.874807.331206.35760HepG2DDX3X
MALAT1ENSG00000251562.314141.809104618.972001.6142035.9045033.66580HepG2DDX55
MALAT1ENSG00000251562.317000.291407529.155101.174902.750101.77410HepG2DDX59
MALAT1ENSG00000251562.38409.212203376.999801.3161011.2283010.08240HepG2DDX6
MALAT1ENSG00000251562.310739.004908551.762500.328507.451706.44110HepG2DKC1
MALAT1ENSG00000251562.33746.026405530.21020-0.5620011.7698010.52540HepG2DNAJC2
MALAT1ENSG00000251562.39008.540104715.232200.9339012.8443010.65680HepG2AGO1
MALAT1ENSG00000251562.312629.317303246.463701.959705.913405.06350HepG2EIF2S1
MALAT1ENSG00000251562.36149.108103720.734600.724708.735307.21900HepG2EIF3D
MALAT1ENSG00000251562.37037.254703587.758800.9718015.5690014.06890HepG2EIF4A3
MALAT1ENSG00000251562.37965.216303493.120301.189102.513201.85590HepG2EIF4B
MALAT1ENSG00000251562.312663.670109415.851600.4274011.8435010.74070HepG2ETF1
MALAT1ENSG00000251562.36746.839004579.834900.558807.106104.47690HepG2EXOSC9
MALAT1ENSG00000251562.313965.923109277.779200.590007.073305.90260HepG2FIP1L1
MALAT1ENSG00000251562.35780.396303845.372100.587902.564901.33900HepG2FKBP4
MALAT1ENSG00000251562.33531.264001558.151001.180203.684402.78570HepG2FUBP3
MALAT1ENSG00000251562.37038.984203619.793100.9594018.3517016.74840HepG2FXR1
MALAT1ENSG00000251562.310929.091103357.944201.7024048.3274045.71530HepG2G3BP1
MALAT1ENSG00000251562.36044.909603564.815900.761807.317705.85810HepG2G3BP2
MALAT1ENSG00000251562.310350.686106225.887600.733306.222504.05730HepG2GTF2F1
MALAT1ENSG00000251562.35959.279908533.96060-0.5181015.9683013.94800HepG2HDGF
MALAT1ENSG00000251562.38925.104506328.892400.495802.635501.30900HepG2HLTF
MALAT1ENSG00000251562.38543.064005633.188900.6007010.686809.54230HepG2HNRNPA1
MALAT1ENSG00000251562.310129.204407292.365500.4740011.9292010.24560HepG2HNRNPA2B1
MALAT1ENSG00000251562.310576.949203400.093501.6372032.9786030.84970HepG2HNRNPK
MALAT1ENSG00000251562.310417.397207229.216200.527004.483203.64150HepG2HNRNPL
MALAT1ENSG00000251562.35307.927606224.37710-0.229803.910503.20120HepG2HNRNPU
MALAT1ENSG00000251562.38795.370403413.296601.365506.430805.44020HepG2IGF2BP2
MALAT1ENSG00000251562.37547.228603203.152201.236404.273003.05350HepG2IGF2BP3
MALAT1ENSG00000251562.35357.686006358.00960-0.247003.517102.69930HepG2ILF2
MALAT1ENSG00000251562.311152.281103433.156301.6996010.437108.40880HepG2KHSRP
MALAT1ENSG00000251562.35853.559808171.17610-0.4812019.9536017.55240HepG2KIF1C
MALAT1ENSG00000251562.310513.135803621.056301.5376041.3812039.11990HepG2MAGOH
MALAT1ENSG00000251562.38292.801503894.359901.090408.128306.42230HepG2METAP2
MALAT1ENSG00000251562.311245.883307510.376600.582304.103803.12720HepG2MSI2
MALAT1ENSG00000251562.39802.722607314.919400.422202.521201.59900HepG2MTPAP
MALAT1ENSG00000251562.310012.195303727.127901.4255025.3812023.59960HepG2NCBP2
MALAT1ENSG00000251562.312788.674807868.888500.700507.739806.48180HepG2NOL12
MALAT1ENSG00000251562.38404.196304238.241800.987508.566406.60300HepG2NONO
MALAT1ENSG00000251562.313247.183706359.890201.0585028.3884026.41350HepG2NSUN2
MALAT1ENSG00000251562.311998.297409564.441100.327003.261201.52770HepG2NUP35
MALAT1ENSG00000251562.38681.498303319.314401.3870034.5996032.11960HepG2PABPC4
MALAT1ENSG00000251562.36937.348306161.173700.171102.168101.41030HepG2PARN
MALAT1ENSG00000251562.38887.581603153.255501.494805.306604.50960HepG2PCBP1
MALAT1ENSG00000251562.39063.613706256.796800.534603.107302.00980HepG2PCBP2
MALAT1ENSG00000251562.34243.218005551.66180-0.387803.340802.53690HepG2PPIL4
MALAT1ENSG00000251562.36655.853404425.505900.5887019.3394017.61840HepG2PRPF4
MALAT1ENSG00000251562.310372.903606577.855500.657002.804801.57870HepG2PRPF6
MALAT1ENSG00000251562.313360.944403209.417602.0575053.4958051.75860HepG2PTBP1
MALAT1ENSG00000251562.311827.927007972.911200.568902.453301.88770HepG2PUM1
MALAT1ENSG00000251562.38042.161209104.40640-0.179001.922201.38920HepG2PUS1
MALAT1ENSG00000251562.311875.860003474.041001.773205.845704.98510HepG2QKI
MALAT1ENSG00000251562.315122.063406039.248901.3241015.3678013.83880HepG2RAVER1
MALAT1ENSG00000251562.316220.9780011463.818900.5007010.760309.23740HepG2RBM15
MALAT1ENSG00000251562.325758.809307869.981201.7105010.381409.52050HepG2RBM22
MALAT1ENSG00000251562.38265.157703153.609801.3899011.7477010.41790HepG2RBM25
MALAT1ENSG00000251562.37389.003103571.057201.048904.028603.39810HepG2NELFE
MALAT1ENSG00000251562.37316.139003327.253901.136703.779403.07400HepG2RECQL
MALAT1ENSG00000251562.312746.082908246.767100.628104.472303.63300HepG2RPLP0
MALAT1ENSG00000251562.35814.415703620.073100.6835010.182509.09230HepG2RPS19
MALAT1ENSG00000251562.39984.304006567.221800.604304.393202.45050HepG2RTF1
MALAT1ENSG00000251562.33306.637605543.13300-0.7453036.1830034.25650HepG2SAFB2
MALAT1ENSG00000251562.38214.250103633.885601.176508.030706.45330HepG2SERBP1
MALAT1ENSG00000251562.316999.2159012228.630600.475103.255702.52350HepG2SF3A3
MALAT1ENSG00000251562.311789.421003339.871901.819509.595508.59350HepG2SF3B4
MALAT1ENSG00000251562.37979.948706464.313900.303802.650502.01760HepG2SMN1
MALAT1ENSG00000251562.311706.957607899.609600.567404.104103.14300HepG2SNRNP70
MALAT1ENSG00000251562.318304.494008888.980801.0420086.9025085.10840HepG2SRFBP1
MALAT1ENSG00000251562.37795.545003486.734201.160707.753507.05430HepG2SRSF1
MALAT1ENSG00000251562.39960.477607639.027600.382702.692601.70590HepG2SRSF3
MALAT1ENSG00000251562.310015.159207415.565700.4335010.364309.25500HepG2SRSF5
MALAT1ENSG00000251562.36310.740207522.11450-0.253302.004601.40160HepG2SRSF7
MALAT1ENSG00000251562.315017.680902837.187502.4040049.7518047.98410HepG2SRSF9
MALAT1ENSG00000251562.314451.588807717.960900.904805.888405.19380HepG2SSB
MALAT1ENSG00000251562.310823.725806198.358400.804104.783403.19960HepG2STAU1
MALAT1ENSG00000251562.310706.532505643.469900.923708.624106.58370HepG2SUB1
MALAT1ENSG00000251562.311643.642304599.103801.3400013.0268011.74060HepG2SUPV3L1
MALAT1ENSG00000251562.38783.505403135.763701.4859013.5804012.47560HepG2TAF15
MALAT1ENSG00000251562.35732.484606990.78520-0.286302.559401.85800HepG2TARDBP
MALAT1ENSG00000251562.310723.983403083.220401.7982042.0931039.28010HepG2TFIP11
MALAT1ENSG00000251562.36367.331802879.481701.144805.856304.65300HepG2TIA1
MALAT1ENSG00000251562.37879.527506048.463100.381405.952205.27100HepG2TIAL1
MALAT1ENSG00000251562.37710.937406102.190900.337507.499906.64850HepG2TRIM56
MALAT1ENSG00000251562.311703.020807765.858900.591606.934605.58060HepG2UBE2L3
MALAT1ENSG00000251562.310675.843902717.507601.973909.294707.90550HepG2UCHL5
MALAT1ENSG00000251562.313739.3638010844.897300.341208.778907.65330HepG2UPF1
MALAT1ENSG00000251562.313283.823305936.454101.161903.387901.97400HepG2XRCC5
MALAT1ENSG00000251562.38377.366004367.259100.9397067.6409065.26250HepG2ZC3H8
MALAT1ENSG00000251562.313999.3444011927.351200.231006.177405.44370HepG2ZNF622
MALAT1ENSG00000251562.341870.7786025832.629000.696602.717201.50840K562ABCF1
MALAT1ENSG00000251562.354223.0567040845.771100.408603.822203.17400K562AGGF1
MALAT1ENSG00000251562.352499.4967042502.955000.304602.137301.56020K562AKAP8L
MALAT1ENSG00000251562.319919.0969032083.29230-0.6877015.9357013.09980K562APOBEC3C
MALAT1ENSG00000251562.320750.6218033585.16280-0.694705.125804.36960K562AQR
MALAT1ENSG00000251562.324366.3088017994.128000.437304.451102.59040K562BUD13
MALAT1ENSG00000251562.370464.7435044713.436500.656105.262003.91190K562CELF1
MALAT1ENSG00000251562.312309.926109272.135800.408704.076702.40860K562DHX30
MALAT1ENSG00000251562.329410.0871045729.45980-0.636804.151403.04790K562DKC1
MALAT1ENSG00000251562.317918.534308907.018601.0083025.2118021.81210K562DNAJC21
MALAT1ENSG00000251562.327256.6186031874.79190-0.225802.760301.55430K562EIF2S1
MALAT1ENSG00000251562.311808.0192015349.48380-0.378408.016906.88860K562EIF2S2
MALAT1ENSG00000251562.315043.3749019807.39700-0.396902.491201.73540K562EIF3G
MALAT1ENSG00000251562.319630.4407030316.51770-0.627004.482203.43640K562EIF4A3
MALAT1ENSG00000251562.316561.528209043.235900.872805.538302.68540K562EIF4G1
MALAT1ENSG00000251562.325139.9989036360.76420-0.5324017.9279015.68270K562EIF4G2
MALAT1ENSG00000251562.330182.7727019745.815700.612105.742103.33290K562ESF1
MALAT1ENSG00000251562.312036.5218018570.14760-0.625603.734602.73830K562FIP1L1
MALAT1ENSG00000251562.342787.4195020273.834901.077504.773603.54110K562FTO
MALAT1ENSG00000251562.311399.7422031528.02490-1.4676020.0684018.55330K562FXR1
MALAT1ENSG00000251562.325332.5789015632.836200.6963015.3867013.16680K562HNRNPA1
MALAT1ENSG00000251562.330433.1911017310.606200.8139025.4154022.93810K562HNRNPU
MALAT1ENSG00000251562.318045.4459025176.58940-0.480406.616705.39980K562HSPD1
MALAT1ENSG00000251562.337192.0293019163.545900.956502.357101.50460K562KRR1
MALAT1ENSG00000251562.313198.6794019223.91340-0.542503.102701.61430K562LARP7
MALAT1ENSG00000251562.310680.0586017703.55920-0.729105.463403.21810K562LSM11
MALAT1ENSG00000251562.325361.5657041597.12530-0.713802.359001.51310K562MATR3
MALAT1ENSG00000251562.334019.9371050526.69460-0.570703.581602.52690K562MBNL1
MALAT1ENSG00000251562.327585.8182021903.415700.332703.800102.76170K562METAP2
MALAT1ENSG00000251562.347940.0848038756.118700.306702.666601.55920K562MSI2
MALAT1ENSG00000251562.38524.8131014973.60040-0.812703.521301.33770K562PA2G4
MALAT1ENSG00000251562.344308.9546030613.016800.533402.498401.57080K562PABPN1
MALAT1ENSG00000251562.364064.6575037087.913600.788508.143206.43080K562PCBP2
MALAT1ENSG00000251562.314106.6019023661.97520-0.746209.728508.17490K562PCBP3
MALAT1ENSG00000251562.328155.8973017128.565200.716906.726004.21730K562PKM
MALAT1ENSG00000251562.311164.3692018150.38090-0.701108.841807.44280K562POLR2G
MALAT1ENSG00000251562.315551.4936021081.39570-0.438905.246604.05880K562PPIG
MALAT1ENSG00000251562.33568.0978013889.36850-1.9608013.7364012.05590K562PRPF8
MALAT1ENSG00000251562.369332.1675040489.087000.775907.547206.48750K562PTBP1
MALAT1ENSG00000251562.325628.5146039671.66120-0.6304012.9480011.17220K562PUF60
MALAT1ENSG00000251562.396446.1125042143.557701.1943037.2402035.18610K562PUS1
MALAT1ENSG00000251562.348932.5599033641.502600.540503.185201.64500K562RAVER1
MALAT1ENSG00000251562.358892.1172038842.051700.600405.121703.93850K562RBM22
MALAT1ENSG00000251562.385409.2191037849.926101.1740021.4054017.33340K562RBM34
MALAT1ENSG00000251562.310967.9043016243.67940-0.566603.589102.46180K562RCC2
MALAT1ENSG00000251562.317397.1914040870.87160-1.232206.606904.83760K562NELFE
MALAT1ENSG00000251562.317740.8759035857.37290-1.015202.654501.67470K562RPS3
MALAT1ENSG00000251562.37694.9055014204.68800-0.884404.330502.66240K562RRP9
MALAT1ENSG00000251562.39675.8200016169.79370-0.740809.762107.79290K562SAFB
MALAT1ENSG00000251562.330064.8397036676.86600-0.286802.175401.41740K562SF3B4
MALAT1ENSG00000251562.39409.8406015399.20610-0.710603.920902.63410K562SRFBP1
MALAT1ENSG00000251562.321078.7039039689.13600-0.913004.611403.70270K562SRSF1
MALAT1ENSG00000251562.330536.6458021218.069700.525108.616306.54780K562SRSF7
MALAT1ENSG00000251562.332875.4992024364.593000.432105.370203.43710K562SSRP1
MALAT1ENSG00000251562.336622.6347022284.175100.716609.137406.80220K562STAU1
MALAT1ENSG00000251562.38251.7022018204.14540-1.1415020.0242017.91120K562SYNCRIP
MALAT1ENSG00000251562.372468.8667034608.500501.066102.858601.36880K562TAF15
MALAT1ENSG00000251562.322437.8656040175.89940-0.840403.878003.03370K562TARDBP
MALAT1ENSG00000251562.325514.3999038752.11530-0.603002.623801.82810K562TIA1
MALAT1ENSG00000251562.311953.5952017131.47380-0.519202.459901.58140K562TIAL1
MALAT1ENSG00000251562.327109.8619021720.988000.319603.074301.59870K562TRIP6
MALAT1ENSG00000251562.345167.9294034193.632700.401503.212202.01710K562U2AF1
MALAT1ENSG00000251562.344009.1272035308.029700.317702.091101.39350K562U2AF2
MALAT1ENSG00000251562.359895.3234037845.982600.662203.411501.59520K562YTHDC2
MALAT1ENSG00000251562.350264.6142037827.719700.410004.471403.33340K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MALAT1 is not available on ENCORE database.





2 RBPs can affect the splicing of MALAT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSMALAT1ENSG00000251562.3chr11+652698066526995765269806652698646527010765271080-0.367000.000000.00009shorterK562HNRNPC
A5SSMALAT1ENSG00000251562.3chr11+652698066526995765269806652698646527010765271080-0.192000.000260.08525shorterHepG2HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MALAT1 is not avaliable on ENCORE database.