UBASH3B

General Information

Gene Name       : UBASH3B
Gene ID             : ENSG00000154127.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBASH3B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBASH3BENSG00000154127.90.350.200.28ENCSR000AEF
HepG2UBASH3BENSG00000154127.94.323.924.12ENCSR985KAT
K562UBASH3BENSG00000154127.90.070.090.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBASH3B is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBASH3B RNA is bound by 3 proteins.  







eCLIP assay for UBASH3B is not avaliable on ENCORE database.





3 proteins are bound to UBASH3B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11122527343122527403+intron-Distal4.053083.40229HepG2CSTF2T
chr11122540335122540429+intron-Distal4.569715.20135HepG2QKI
chr11122573573122573740+intron-Distal4.452554.17759HepG2QKI
chr11122558959122559018+intron-Distal3.775684.09621HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBASH3B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBASH3B is not available on ENCORE database.

  • 138 RBPs can affect the levels of UBASH3B.  








The Knockdown/knockout RNA-Seq assay for UBASH3B is not available on ENCORE database.





138 RBPs can affect the gene expression of UBASH3B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBASH3BENSG00000154127.5242.05440143.945300.749703.786102.54410HepG2AATF
UBASH3BENSG00000154127.5162.14750370.51770-1.192207.949106.46830HepG2ABCF1
UBASH3BENSG00000154127.51223.80220261.821702.2246099.5495097.28220HepG2ACO1
UBASH3BENSG00000154127.595.73800387.59660-2.0174025.9129023.47880HepG2ADAR
UBASH3BENSG00000154127.52531.34120104.688604.5956093.9059091.57380HepG2AKAP1
UBASH3BENSG00000154127.5612.27730249.844101.293109.587707.78440HepG2AKAP8
UBASH3BENSG00000154127.5347.64120263.065800.402102.369301.65360HepG2AKAP8L
UBASH3BENSG00000154127.5215.3633086.624501.313808.088706.78600HepG2ASCC1
UBASH3BENSG00000154127.51053.08600504.682301.0611024.6687022.99250HepG2AUH
UBASH3BENSG00000154127.5428.56050277.684900.626004.698803.11140HepG2BUD13
UBASH3BENSG00000154127.5890.89180373.448501.2542024.0239022.17960HepG2CALR
UBASH3BENSG00000154127.5946.59420694.341600.447002.519201.59380HepG2CCAR1
UBASH3BENSG00000154127.5968.55290305.236401.6658036.7991033.57200HepG2CPSF7
UBASH3BENSG00000154127.5269.83930397.46980-0.558704.141102.89030HepG2YBX3
UBASH3BENSG00000154127.5364.46160147.281901.307109.953907.05250HepG2CSTF2T
UBASH3BENSG00000154127.51520.83150416.784201.8674077.5411075.15500HepG2CELF1
UBASH3BENSG00000154127.5128.29520242.15530-0.916507.585406.31930HepG2DDX19B
UBASH3BENSG00000154127.5691.06920398.034900.795805.835104.21230HepG2DDX1
UBASH3BENSG00000154127.596.19670155.44860-0.692402.537901.66550HepG2DDX24
UBASH3BENSG00000154127.5799.01200100.291202.9939062.6985060.07900HepG2DDX3X
UBASH3BENSG00000154127.5729.95250393.576300.8911010.480208.17960HepG2DDX47
UBASH3BENSG00000154127.5314.43170172.007700.870206.193804.26710HepG2DDX52
UBASH3BENSG00000154127.51345.92840310.362302.1165043.3124040.88150HepG2DDX55
UBASH3BENSG00000154127.51350.55700679.462000.991007.485305.92060HepG2DDX59
UBASH3BENSG00000154127.5179.21270328.33760-0.873506.246404.78650HepG2DDX5
UBASH3BENSG00000154127.5871.9491086.134703.3395072.3528069.94000HepG2DDX6
UBASH3BENSG00000154127.5180.64500376.43940-1.059309.827808.10830HepG2DHX30
UBASH3BENSG00000154127.5112.02840250.49680-1.160909.220008.12840HepG2DKC1
UBASH3BENSG00000154127.5291.87460390.30040-0.419202.604101.91740HepG2DNAJC21
UBASH3BENSG00000154127.5390.76130170.989501.192304.034202.69040HepG2EFTUD2
UBASH3BENSG00000154127.5577.52080146.298301.9809026.1461023.06130HepG2AGO1
UBASH3BENSG00000154127.5629.8544082.820702.9269024.0187022.38730HepG2EIF2S1
UBASH3BENSG00000154127.5390.99170281.149000.475702.890201.69480HepG2EIF2S2
UBASH3BENSG00000154127.5889.94810166.522502.4179050.7035047.45430HepG2EIF3D
UBASH3BENSG00000154127.5494.6151089.106202.472609.973108.70810HepG2EIF4B
UBASH3BENSG00000154127.5240.87230423.53550-0.814206.497805.27310HepG2EIF4G2
UBASH3BENSG00000154127.585.44270321.03030-1.9097019.9701017.48760HepG2ESF1
UBASH3BENSG00000154127.51017.19790579.453100.8117015.0915013.86850HepG2ETF1
UBASH3BENSG00000154127.5696.50130255.861501.444703.369502.44760HepG2EWSR1
UBASH3BENSG00000154127.5241.77240148.891700.699303.903502.48690HepG2FAM120A
UBASH3BENSG00000154127.5130.73290244.17290-0.901303.936001.50260HepG2FASTKD1
UBASH3BENSG00000154127.5453.33880151.468601.5815020.8132018.29570HepG2FASTKD2
UBASH3BENSG00000154127.51530.87290374.155902.0325043.9660041.64350HepG2FIP1L1
UBASH3BENSG00000154127.5163.79490258.34820-0.657402.641801.40080HepG2FKBP4
UBASH3BENSG00000154127.5517.28170243.684201.085808.609606.75510HepG2FUS
UBASH3BENSG00000154127.5477.3589092.329602.3701033.9836031.89380HepG2FXR1
UBASH3BENSG00000154127.5477.5575085.662602.478807.530706.45770HepG2G3BP1
UBASH3BENSG00000154127.5847.77570252.302201.748405.446204.01040HepG2GNB2L1
UBASH3BENSG00000154127.5357.14550678.36340-0.925503.671802.94340HepG2GPKOW
UBASH3BENSG00000154127.5376.12370258.915100.538602.331101.30780HepG2GRSF1
UBASH3BENSG00000154127.5528.49790229.621001.202509.690307.03950HepG2GTF2F1
UBASH3BENSG00000154127.5449.18520249.975000.8454010.012908.30790HepG2HDGF
UBASH3BENSG00000154127.5473.98920233.504301.021306.077403.94430HepG2HLTF
UBASH3BENSG00000154127.577.15420394.03940-2.3525031.4654029.73330HepG2HNRNPA1
UBASH3BENSG00000154127.5843.21350411.874501.0336019.9267017.87890HepG2HNRNPA2B1
UBASH3BENSG00000154127.5620.44400230.882001.4260016.4864013.20890HepG2HNRNPAB
UBASH3BENSG00000154127.5404.98240744.17190-0.877807.099706.02060HepG2HNRNPF
UBASH3BENSG00000154127.5307.7460086.709901.8274017.2910015.70230HepG2HNRNPK
UBASH3BENSG00000154127.5357.97730647.36700-0.854703.425302.73350HepG2HNRNPLL
UBASH3BENSG00000154127.5520.68430258.212301.0118011.8843010.15630HepG2HNRNPM
UBASH3BENSG00000154127.5402.11370732.80890-0.865808.328207.13430HepG2IGF2BP1
UBASH3BENSG00000154127.5416.4472087.078902.2576029.6882027.77030HepG2IGF2BP2
UBASH3BENSG00000154127.5921.4926081.700703.4955033.8619030.79760HepG2IGF2BP3
UBASH3BENSG00000154127.5691.13480444.739300.635909.196307.93740HepG2ILF2
UBASH3BENSG00000154127.5373.51100223.311200.742005.134602.95530HepG2CCAR2
UBASH3BENSG00000154127.5164.37680239.34830-0.542103.073202.00090HepG2KIF1C
UBASH3BENSG00000154127.51000.71200732.926900.449202.566301.76800HepG2LARP4
UBASH3BENSG00000154127.5610.65910247.207701.3045017.4495014.90380HepG2LARP7
UBASH3BENSG00000154127.5225.4937092.361701.287607.943506.84390HepG2MAGOH
UBASH3BENSG00000154127.5410.4334092.882802.143604.911804.09160HepG2MATR3
UBASH3BENSG00000154127.5585.54850174.258601.7485015.5555013.24930HepG2METAP2
UBASH3BENSG00000154127.5642.09550302.913901.0838014.3776012.69050HepG2MSI2
UBASH3BENSG00000154127.5333.80890660.04400-0.983504.152902.95280HepG2MTPAP
UBASH3BENSG00000154127.5448.6148095.074102.2383024.0272022.28450HepG2NCBP2
UBASH3BENSG00000154127.5586.86940257.906501.186107.750505.42240HepG2NKRF
UBASH3BENSG00000154127.5821.61860444.414500.8865013.6310011.99800HepG2NOL12
UBASH3BENSG00000154127.563.46230573.95280-3.1770016.8529015.18960HepG2NSUN2
UBASH3BENSG00000154127.5724.83400255.626801.5035013.7160011.70210HepG2PABPC1
UBASH3BENSG00000154127.5216.8327084.685101.356308.820807.55010HepG2PABPC4
UBASH3BENSG00000154127.5692.80020430.972100.684708.984907.59850HepG2PARN
UBASH3BENSG00000154127.5794.38970106.629302.8971079.3105076.89500HepG2PCBP1
UBASH3BENSG00000154127.5222.33300388.33580-0.804607.607606.43080HepG2PPIL4
UBASH3BENSG00000154127.5107.20010355.02990-1.7276024.5071022.62970HepG2PRPF4
UBASH3BENSG00000154127.5360.30340239.499400.589103.340802.46200HepG2PRPF8
UBASH3BENSG00000154127.5879.60180108.515203.0189078.9804077.01710HepG2PTBP1
UBASH3BENSG00000154127.5220.98890424.22230-0.940808.753807.77290HepG2PUF60
UBASH3BENSG00000154127.5744.81810450.318700.7258011.9032010.85430HepG2PUM1
UBASH3BENSG00000154127.5363.80470266.684800.447902.979002.34590HepG2PUS1
UBASH3BENSG00000154127.5173.31840117.490800.560802.188901.62210HepG2QKI
UBASH3BENSG00000154127.51609.41570222.631102.8537047.4124044.92730HepG2RAVER1
UBASH3BENSG00000154127.5834.58070338.203801.3031024.9866022.86680HepG2RBM15
UBASH3BENSG00000154127.51553.83730484.313401.6817054.1107052.38920HepG2RBM22
UBASH3BENSG00000154127.5611.45430106.643202.5194053.7801051.15390HepG2RBM25
UBASH3BENSG00000154127.5307.14210120.753801.346705.750805.01570HepG2NELFE
UBASH3BENSG00000154127.5173.55790112.489700.625502.687802.07880HepG2RECQL
UBASH3BENSG00000154127.51312.29610801.474700.711307.386806.35040HepG2RPLP0
UBASH3BENSG00000154127.580.49270218.66840-1.441808.555406.97020HepG2RPS10
UBASH3BENSG00000154127.5531.92320162.064901.7145025.8979024.33130HepG2RPS19
UBASH3BENSG00000154127.5448.48510274.916500.706004.694703.66790HepG2RPS2
UBASH3BENSG00000154127.5185.57850280.77620-0.597402.554801.78530HepG2RPS3A
UBASH3BENSG00000154127.5646.26670280.638601.2033014.2581011.85000HepG2RPS5
UBASH3BENSG00000154127.51013.50130236.922302.0968039.3918037.15440HepG2RRP9
UBASH3BENSG00000154127.5199.68020387.73970-0.9574010.680009.54210HepG2SAFB2
UBASH3BENSG00000154127.598.23190266.78360-1.441409.277606.70830HepG2SBDS
UBASH3BENSG00000154127.5359.97830162.608001.146409.655607.93400HepG2SERBP1
UBASH3BENSG00000154127.5324.21750163.187900.990306.502405.44350HepG2SF3A3
UBASH3BENSG00000154127.5610.17440112.949902.4334057.2372055.24320HepG2SF3B4
UBASH3BENSG00000154127.5107.70590406.73850-1.9170031.7506029.89520HepG2SLBP
UBASH3BENSG00000154127.5915.07960452.177101.0169024.7543023.13990HepG2SMN1
UBASH3BENSG00000154127.5573.71820226.931201.3380013.7219011.55020HepG2SMNDC1
UBASH3BENSG00000154127.5529.60950280.761400.915502.656301.38120HepG2SNRNP200
UBASH3BENSG00000154127.51683.53840547.010401.6218072.9129071.24060HepG2SRFBP1
UBASH3BENSG00000154127.5505.75340117.906802.1007024.2267023.12930HepG2SRSF1
UBASH3BENSG00000154127.51013.74610418.843401.2751026.4768024.81690HepG2SRSF5
UBASH3BENSG00000154127.5565.86790731.08260-0.369602.267001.63120HepG2SRSF7
UBASH3BENSG00000154127.5260.3032095.933501.4400015.1896014.08190HepG2SRSF9
UBASH3BENSG00000154127.5125.54020474.92800-1.9196036.2917034.92430HepG2SSB
UBASH3BENSG00000154127.5788.08240208.050601.9213023.2715020.32590HepG2SUB1
UBASH3BENSG00000154127.5615.64760476.352600.370002.947402.30970HepG2SUCLG1
UBASH3BENSG00000154127.5444.52280252.730900.814608.091906.54440HepG2SUPT6H
UBASH3BENSG00000154127.5573.42840308.984100.892007.317306.30130HepG2SUPV3L1
UBASH3BENSG00000154127.5450.57720106.011502.0875036.7425034.99960HepG2TAF15
UBASH3BENSG00000154127.5406.14010630.75650-0.635102.438501.75170HepG2TARDBP
UBASH3BENSG00000154127.5559.24040207.115301.4329017.6513015.61860HepG2TFIP11
UBASH3BENSG00000154127.5165.7090097.375900.766903.620102.66960HepG2TIA1
UBASH3BENSG00000154127.51074.67650426.844401.3320039.8721038.04240HepG2TRIM56
UBASH3BENSG00000154127.5247.95120414.42770-0.741105.869604.53290HepG2TUFM
UBASH3BENSG00000154127.5719.65660320.121101.1686014.6075013.12440HepG2U2AF1
UBASH3BENSG00000154127.51097.83540327.377601.745507.777006.03900HepG2U2AF2
UBASH3BENSG00000154127.51213.75030438.652301.4682022.6106020.27740HepG2UBE2L3
UBASH3BENSG00000154127.596.85630282.99590-1.546909.432607.52950HepG2UPF2
UBASH3BENSG00000154127.5875.29440139.724102.6471040.6488038.75000HepG2UTP3
UBASH3BENSG00000154127.5151.19650251.48640-0.734103.497602.25590HepG2XPO5
UBASH3BENSG00000154127.5506.52180218.902501.210209.305207.08160HepG2XRCC5
UBASH3BENSG00000154127.5438.06750244.823000.839305.305503.86200HepG2XRCC6
UBASH3BENSG00000154127.564.01270304.16020-2.2484021.8781019.91610HepG2XRN2
UBASH3BENSG00000154127.5496.95350159.167301.6425032.6803031.33440HepG2ZNF622
UBASH3BENSG00000154127.511.444300.0000099999.999902.877902.11430K562PRPF8
UBASH3BENSG00000154127.58.234300.0000099999.999902.043201.34670K562RPS19
UBASH3BENSG00000154127.512.064101.007003.582502.504001.72470K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBASH3B is not available on ENCORE database.






No RBPs affect the alternative splcing events of UBASH3B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for UBASH3B is not avaliable on ENCORE database.