SH3D21

General Information

Gene Name : SH3D21
Gene ID : ENSG00000214193.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SH3D21)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SH3D21	ENSG00000214193.10	1.46	3.45	2.46	ENCSR000AEF
HepG2	SH3D21	ENSG00000214193.10	7.23	9.37	8.30	ENCSR985KAT
K562	SH3D21	ENSG00000214193.10	2.16	3.03	2.59	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SH3D21 is not avaliable on ENCORE database.

Proteins bound to RNA

SH3D21 RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for SH3D21 is not avaliable on ENCORE database.

45 proteins are bound to SH3D21 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	36787531	36787568	+	intron-Distal	6.03287	65.01916	HepG2	RBFOX2
chr1	36787724	36787755	+	intron-Distal	6.13534	59.75782	HepG2	RBFOX2
chr1	36787480	36787531	+	intron-Distal	5.76044	53.10351	HepG2	RBFOX2
chr1	36787533	36787619	+	intron-Distal	6.72216	45.80830	K562	RBFOX2
chr1	36787678	36787724	+	intron-Distal	7.14752	41.56672	HepG2	RBFOX2
chr1	36787504	36787618	+	intron-Distal	4.14333	39.43200	K562	DROSHA
chr1	36787791	36787817	+	intron-Distal	6.15045	38.86817	HepG2	RBFOX2
chr1	36787817	36787887	+	intron-Distal,intron-Proximal	6.10884	37.43999	HepG2	RBFOX2
chr1	36787568	36787621	+	intron-Distal	5.25279	34.27030	HepG2	RBFOX2
chr1	36787752	36787822	+	intron-Distal	6.80921	30.19310	K562	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 189 entries

eCLIP assay for SH3D21 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SH3D21 is not available on ENCORE database.
123 RBPs can affect the levels of SH3D21.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SH3D21 is not available on ENCORE database.

123 RBPs can affect the gene expression of SH3D21 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SH3D21	ENSG00000214193.5	82.81450	349.87860	-2.07890	28.15220	25.80040	K562	SYNCRIP
SH3D21	ENSG00000214193.5	267.32040	632.94850	-1.24350	25.68940	24.12830	HepG2	CKAP4
SH3D21	ENSG00000214193.5	213.72790	664.53650	-1.63660	24.96610	23.02090	HepG2	U2AF1
SH3D21	ENSG00000214193.5	62.18270	247.39460	-1.99220	20.55890	19.02080	K562	FXR1
SH3D21	ENSG00000214193.5	79.93470	310.81130	-1.95910	21.04810	18.53480	K562	SAFB
SH3D21	ENSG00000214193.5	279.83030	614.36190	-1.13450	18.52240	17.10330	HepG2	SRSF5
SH3D21	ENSG00000214193.5	257.00170	725.11780	-1.49640	18.87850	17.05130	HepG2	SF3A3
SH3D21	ENSG00000214193.5	338.49780	660.52010	-0.96450	17.59920	16.37080	HepG2	PUM1
SH3D21	ENSG00000214193.5	35.90330	219.42050	-2.61150	18.30950	16.36270	K562	PRPF8
SH3D21	ENSG00000214193.5	691.89810	345.33200	1.00250	15.50910	13.49630	K562	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 144 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SH3D21 is not available on ENCORE database.

8 RBPs can affect the splicing of SH3D21 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	SH3D21	ENSG00000214193.5	chr1	+	36773117	36773274			36773117	36773208	36773370	36773426	0.38300	0.00006	0.00355	longer	K562	PUS1
RI	SH3D21	ENSG00000214193.5	chr1	+	36784722	36784913			36784722	36784765	36784860	36784913	-0.12800	0.00027	0.02504	excluded	HepG2	HNRNPUL1
MXE	SH3D21	ENSG00000214193.5	chr1	+	36775148	36775191	36784671	36784765	36773989	36774076	36785275	36786399	-0.10800	0.00031	0.00823	2included	HepG2	U2AF1
SE	SH3D21	ENSG00000214193.5	chr1	+	36773518	36773564			36773370	36773426	36773989	36774076	-0.42800	0.00084	0.01674	excluded	K562	HNRNPC
A5SS	SH3D21	ENSG00000214193.5	chr1	+	36773117	36773274			36773117	36773208	36773370	36773426	0.53800	0.00092	0.06879	longer	HepG2	SF3B4
SE	SH3D21	ENSG00000214193.5	chr1	+	36773518	36773564			36773370	36773426	36773989	36774076	-0.25100	0.00106	0.04048	excluded	HepG2	HNRNPC
SE	SH3D21	ENSG00000214193.5	chr1	+	36773518	36773564			36773370	36773426	36773989	36774076	-0.38900	0.00120	0.02393	excluded	HepG2	U2AF1
SE	SH3D21	ENSG00000214193.5	chr1	+	36773518	36773564			36773370	36773426	36773989	36774101	-0.36800	0.00201	0.06858	excluded	K562	SF3B1
SE	SH3D21	ENSG00000214193.5	chr1	+	36785042	36785137			36784860	36784913	36785275	36786399	-0.19000	0.00244	0.02971	excluded	HepG2	U2AF2
SE	SH3D21	ENSG00000214193.5	chr1	+	36785042	36785137			36784860	36784913	36785275	36786399	-0.15100	0.00276	0.06695	excluded	HepG2	SF3A3

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SH3D21

General Information

Functions

Localization

Domains (AlphaFold: SH3D21)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SH3D21 is not avaliable on ENCORE database.

45 proteins are bound to SH3D21 RNA:

eCLIP assay for SH3D21 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SH3D21 is not available on ENCORE database.

123 RBPs can affect the gene expression of SH3D21 :

The Knockdown/knockout RNA-Seq assay for SH3D21 is not available on ENCORE database.

8 RBPs can affect the splicing of SH3D21 :

The Knockdown/knockout RNA-Seq assay for SH3D21 is not avaliable on ENCORE database.