DENND4A

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DENND4A	ENSG00000174485.15	30.94	26.77	28.86	ENCSR000AEF
HepG2	DENND4A	ENSG00000174485.15	4.79	8.56	6.68	ENCSR985KAT
K562	DENND4A	ENSG00000174485.15	10.70	11.43	11.06	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DENND4A is not avaliable on ENCORE database.

Proteins bound to RNA

DENND4A RNA is bound by 35 proteins.

eCLIP assay for DENND4A is not avaliable on ENCORE database.

35 proteins are bound to DENND4A RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	65954016	65954140	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	5.47003	9.07598	K562	PUM2
chr15	66048744	66048851	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.53069	7.89103	HepG2	U2AF2
chr15	66084437	66084514	-	5'-UTR,intron-Distal,intron-Proximal	4.24400	11.24360	HepG2	CSTF2T
chr15	66084545	66084630	-	5'-UTR,intron-Distal,intron-Proximal	4.57590	4.10386	HepG2	NCBP2
chr15	66048740	66048845	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.99133	4.49508	K562	U2AF2
chr15	66084457	66084514	-	5'-UTR,intron-Distal,intron-Proximal	3.46293	4.19392	HepG2	GTF2F1
chr15	66084456	66084461	-	5'-UTR,intron-Distal	4.89647	4.14061	K562	DROSHA
chr15	66084342	66084430	-	5'-UTR,intron-Distal	4.42437	5.05409	HepG2	NCBP2
chr15	66084461	66084513	-	5'-UTR,intron-Distal,intron-Proximal	5.86925	7.81817	K562	DROSHA
chr15	66084450	66084511	-	5'-UTR,intron-Distal,intron-Proximal	3.34176	5.61910	HepG2	FASTKD2
chr15	66084464	66084508	-	5'-UTR,intron-Distal,intron-Proximal	3.03687	5.21695	HepG2	PRPF4
chr15	66084461	66084511	-	5'-UTR,intron-Distal,intron-Proximal	4.26370	3.72434	HepG2	NCBP2
chr15	66084450	66084507	-	5'-UTR,intron-Distal,intron-Proximal	4.20153	7.34424	K562	CSTF2T
chr15	66084436	66084501	-	5'-UTR,intron-Distal,intron-Proximal	3.94175	3.07008	K562	NONO
chr15	66048669	66048800	-	5'-UTR,CDS,intron-Distal	3.25204	28.74904	HepG2	BCLAF1
chr15	65983687	65983798	-	CDS,intron-Distal,intron-Proximal	3.54804	3.61259	K562	ZNF622
chr15	66031151	66031180	-	CDS,intron-Distal	3.30372	10.35084	HepG2	BCLAF1
chr15	65983273	65983318	-	CDS,intron-Distal	3.08034	10.09669	HepG2	BCLAF1
chr15	65989682	65989731	-	CDS,intron-Distal,intron-Proximal	3.33508	5.40232	HepG2	U2AF2
chr15	66021974	66022028	-	CDS,intron-Distal,intron-Proximal	4.32389	3.77802	HepG2	U2AF2
chr15	65983230	65983260	-	CDS,intron-Distal	4.49856	5.17013	K562	RBM15
chr15	66021899	66021904	-	CDS,intron-Distal	3.78139	5.97823	HepG2	BCLAF1
chr15	66034066	66034098	-	CDS,intron-Distal	3.88845	12.80995	HepG2	BCLAF1
chr15	65983623	65983692	-	CDS,intron-Distal	3.08906	4.30396	K562	UCHL5
chr15	66031098	66031123	-	CDS,intron-Distal	3.91188	17.98184	HepG2	BCLAF1
chr15	65995210	65995254	-	CDS,intron-Distal,intron-Proximal	4.03335	20.95676	HepG2	BCLAF1
chr15	65994210	65994224	-	CDS,intron-Distal,intron-Proximal	3.59311	7.83567	HepG2	BCLAF1
chr15	66030173	66030198	-	CDS,intron-Distal	3.67736	8.25092	HepG2	BCLAF1
chr15	65998468	65998559	-	CDS,intron-Distal	3.09459	4.03389	K562	ZNF622
chr15	66015269	66015280	-	CDS,intron-Distal	4.22976	10.89658	HepG2	BCLAF1
chr15	65983028	65983093	-	CDS,intron-Distal	3.28080	8.94746	HepG2	HLTF
chr15	66031180	66031210	-	CDS,intron-Distal	3.77650	14.18288	HepG2	BCLAF1
chr15	65983266	65983327	-	CDS,intron-Distal	3.12989	9.66019	HepG2	HLTF
chr15	65968795	65968910	-	CDS,intron-Distal	3.26104	3.90804	HepG2	GRWD1
chr15	66021413	66021475	-	CDS,intron-Distal	4.20611	17.46419	HepG2	BCLAF1
chr15	66010138	66010217	-	CDS,intron-Distal	3.28896	17.47283	HepG2	BCLAF1
chr15	65998440	65998494	-	CDS,intron-Distal	3.60514	12.84442	HepG2	BCLAF1
chr15	65994160	65994210	-	CDS,intron-Distal,intron-Proximal	4.91633	17.34901	HepG2	BCLAF1
chr15	65989602	65989633	-	CDS,intron-Distal,intron-Proximal	5.50129	18.37338	HepG2	BCLAF1
chr15	66015185	66015226	-	CDS,intron-Distal,intron-Proximal	4.17756	12.38345	HepG2	BCLAF1
chr15	65989683	65989731	-	CDS,intron-Distal,intron-Proximal	3.85320	3.95991	K562	U2AF2
chr15	66048477	66048557	-	CDS,intron-Distal,intron-Proximal	3.58554	20.90595	HepG2	BCLAF1
chr15	65994694	65994740	-	CDS,intron-Distal	3.79187	11.46441	HepG2	BCLAF1
chr15	66048476	66048526	-	CDS,intron-Distal,intron-Proximal	3.74386	3.05875	K562	RBM15
chr15	66044888	66044964	-	CDS,intron-Distal	3.74130	17.50902	HepG2	BCLAF1
chr15	66048564	66048634	-	CDS,intron-Distal	4.01757	16.85893	HepG2	BCLAF1
chr15	66031057	66031069	-	CDS,intron-Distal	4.26582	16.95425	HepG2	BCLAF1
chr15	65982895	65982949	-	CDS,intron-Distal,intron-Proximal	3.38168	3.13141	K562	RBM15
chr15	65983100	65983157	-	CDS,intron-Distal	4.38559	15.58304	HepG2	BCLAF1
chr15	66010247	66010274	-	CDS,intron-Distal	4.05410	9.39582	HepG2	BCLAF1
chr15	66007923	66007961	-	CDS,intron-Distal	3.60254	13.92500	HepG2	BCLAF1
chr15	65993419	65993477	-	CDS,intron-Distal	4.23092	16.40391	HepG2	BCLAF1
chr15	65995303	65995360	-	CDS,intron-Distal,intron-Proximal	3.98305	4.79983	HepG2	U2AF2
chr15	66033904	66034061	-	CDS,intron-Distal,intron-Proximal	4.23209	5.42080	K562	EFTUD2
chr15	66015280	66015285	-	CDS,intron-Distal	4.12069	9.37631	HepG2	BCLAF1
chr15	65989633	65989692	-	CDS,intron-Distal	4.06002	17.28671	HepG2	BCLAF1
chr15	65994642	65994668	-	CDS,intron-Distal,intron-Proximal	3.74336	9.83277	HepG2	BCLAF1
chr15	66044741	66044783	-	CDS,intron-Distal	3.08355	9.64262	HepG2	BCLAF1
chr15	66010319	66010331	-	CDS,intron-Distal	4.93746	7.97334	HepG2	BCLAF1
chr15	65960402	65960477	-	CDS,intron-Distal,intron-Proximal	3.59880	5.36861	HepG2	U2AF2
chr15	65957682	65957730	-	CDS,intron-Distal,intron-Proximal	3.62617	14.10339	HepG2	BCLAF1
chr15	66025091	66025120	-	CDS,intron-Distal	3.98238	6.81385	HepG2	BCLAF1
chr15	66031123	66031147	-	CDS,intron-Distal	4.16879	19.00127	HepG2	BCLAF1
chr15	66031042	66031057	-	CDS,intron-Distal,intron-Proximal	3.83394	16.89106	HepG2	BCLAF1
chr15	66021487	66021568	-	CDS,intron-Distal	3.65634	18.34855	HepG2	BCLAF1
chr15	65983260	65983323	-	CDS,intron-Distal	4.14232	10.53730	K562	RBM15
chr15	66015231	66015269	-	CDS,intron-Distal	3.63775	12.18505	HepG2	BCLAF1
chr15	66010116	66010137	-	CDS,intron-Distal	3.17163	11.30774	HepG2	BCLAF1
chr15	65995318	65995342	-	CDS,intron-Distal	3.10979	7.20615	HepG2	BCLAF1
chr15	65988806	65988836	-	CDS,intron-Distal,intron-Proximal	3.14944	11.30774	HepG2	BCLAF1
chr15	65995254	65995318	-	CDS,intron-Distal	4.31181	27.51432	HepG2	BCLAF1
chr15	66030267	66030283	-	CDS,intron-Distal	4.40098	15.99938	HepG2	BCLAF1
chr15	66034108	66034119	-	CDS,intron-Distal	3.51640	6.20035	HepG2	BCLAF1
chr15	65959990	65960059	-	CDS,intron-Distal,intron-Proximal	3.97761	5.99890	HepG2	U2AF2
chr15	65983018	65983081	-	CDS,intron-Distal	3.91766	16.34640	HepG2	BCLAF1
chr15	66034053	66034066	-	CDS,intron-Distal	3.93352	10.98590	HepG2	BCLAF1
chr15	66044818	66044845	-	CDS,intron-Distal	4.83140	10.64218	HepG2	BCLAF1
chr15	65993485	65993524	-	CDS,intron-Distal	5.11760	15.16835	HepG2	BCLAF1
chr15	66073778	66073839	-	intron-Distal	4.71344	4.31720	HepG2	MATR3
chr15	66083952	66084054	-	intron-Distal	3.18731	4.19275	K562	EXOSC5
chr15	65974985	65975042	-	intron-Distal	3.53283	3.34920	HepG2	HLTF
chr15	66053618	66053688	-	intron-Distal,intron-Proximal	3.39259	4.31458	HepG2	TIAL1
chr15	65979133	65979201	-	intron-Distal	3.79758	6.80215	K562	PPIL4
chr15	66083897	66083939	-	intron-Distal	3.14987	3.13597	HepG2	CSTF2T
chr15	65982649	65982723	-	intron-Distal,intron-Proximal	4.12711	3.71735	K562	TIA1
chr15	65979129	65979201	-	intron-Distal	3.31412	7.50579	HepG2	HLTF
chr15	66044116	66044163	-	intron-Distal	3.38121	4.35402	HepG2	SUGP2
chr15	66073421	66073481	-	intron-Distal	4.58699	5.51760	K562	MATR3
chr15	65982003	65982070	-	intron-Distal	3.17131	3.34231	K562	RBM15
chr15	66065631	66065691	-	intron-Distal	4.65007	3.69311	HepG2	CSTF2
chr15	66044112	66044181	-	intron-Distal	4.18923	3.72005	K562	MATR3
chr15	66061492	66061559	-	intron-Distal	5.09066	8.34301	K562	TARDBP
chr15	66083947	66084045	-	intron-Distal	4.64198	19.59643	K562	CSTF2T
chr15	66043750	66043865	-	intron-Distal	4.40745	10.61114	HepG2	SUGP2
chr15	66080268	66080351	-	intron-Distal	3.67325	6.84849	K562	U2AF2
chr15	66058527	66058563	-	intron-Distal	3.39163	4.08009	HepG2	HNRNPC
chr15	65979304	65979349	-	intron-Distal	3.89783	5.63010	HepG2	HLTF
chr15	65973002	65973096	-	intron-Distal,intron-Proximal	4.44151	3.88679	HepG2	CSTF2
chr15	66084202	66084258	-	intron-Distal	3.37772	7.73757	HepG2	PRPF4
chr15	65989432	65989509	-	intron-Distal,intron-Proximal	3.26375	4.09836	HepG2	U2AF2
chr15	66067931	66067979	-	intron-Distal	3.22252	3.33736	HepG2	HNRNPC
chr15	65981899	65981977	-	intron-Distal	3.04770	6.78426	HepG2	HLTF
chr15	66084170	66084256	-	intron-Distal	3.56266	10.31857	K562	CSTF2T
chr15	65995376	65995499	-	intron-Distal,intron-Proximal	4.40408	4.76003	K562	KHSRP
chr15	66084202	66084258	-	intron-Distal	5.44080	10.19497	HepG2	GTF2F1
chr15	65978625	65978694	-	intron-Distal	4.10168	3.97888	HepG2	HNRNPL
chr15	66083880	66083894	-	intron-Distal	4.21519	3.84029	K562	DROSHA
chr15	66005335	66005503	-	intron-Distal	3.25180	4.08064	K562	KHSRP
chr15	66073782	66073831	-	intron-Distal	4.27800	3.45817	K562	MATR3
chr15	66003020	66003088	-	intron-Distal	3.84275	3.45317	HepG2	HNRNPL
chr15	66074638	66074737	-	intron-Distal	3.05075	14.50711	HepG2	SUGP2
chr15	66007361	66007418	-	intron-Distal,intron-Proximal	3.77506	3.24603	K562	KHSRP
chr15	66084156	66084180	-	intron-Distal	5.68284	24.91932	HepG2	XPO5
chr15	66064327	66064430	-	intron-Distal	3.53239	6.71596	K562	UCHL5
chr15	66067636	66067688	-	intron-Distal	5.47114	8.75642	HepG2	HNRNPC
chr15	66066032	66066104	-	intron-Distal	3.05529	4.74233	K562	TARDBP
chr15	66073713	66073763	-	intron-Distal	4.73659	4.49973	K562	MATR3
chr15	66053980	66054054	-	intron-Distal	4.40886	8.65151	HepG2	U2AF2
chr15	66072928	66072976	-	intron-Distal	4.41683	4.12401	HepG2	U2AF2
chr15	65981043	65981116	-	intron-Distal	3.71632	8.03004	HepG2	HLTF
chr15	65979626	65979665	-	intron-Distal	3.73556	4.45817	HepG2	HLTF
chr15	66060758	66060790	-	intron-Distal	4.77207	5.41654	K562	KHSRP
chr15	66053808	66053855	-	intron-Distal,intron-Proximal	4.18649	6.32636	HepG2	U2AF2
chr15	66084180	66084209	-	intron-Distal	4.65239	32.41136	HepG2	XPO5
chr15	66073980	66074064	-	intron-Distal	3.34820	6.21509	K562	MATR3
chr15	65975482	65975542	-	intron-Distal	3.24380	3.80877	HepG2	HLTF
chr15	66084205	66084248	-	intron-Distal	3.72370	3.07008	K562	NONO
chr15	66043637	66043693	-	intron-Distal	3.02908	4.63410	HepG2	SUGP2
chr15	65982012	65982065	-	intron-Distal	4.30598	6.82094	HepG2	HLTF
chr15	66080281	66080351	-	intron-Distal	4.21603	7.97066	HepG2	U2AF2
chr15	65981248	65981310	-	intron-Distal	3.17854	6.77895	HepG2	HLTF
chr15	66083962	66084048	-	intron-Distal	4.70594	11.38030	K562	GTF2F1
chr15	66083964	66084056	-	intron-Distal	3.37344	6.00630	HepG2	GTF2F1
chr15	66073934	66073990	-	intron-Distal	3.99064	14.17814	HepG2	SUGP2
chr15	66053595	66053680	-	intron-Distal,intron-Proximal	3.46764	3.80983	K562	TIA1
chr15	65979124	65979201	-	intron-Distal	3.25184	3.24890	K562	SAFB2
chr15	65981880	65981941	-	intron-Distal	3.71749	3.43652	K562	PPIL4
chr15	66083554	66083692	-	intron-Distal	3.32394	6.83464	K562	KHSRP
chr15	66073690	66073765	-	intron-Distal	4.46928	23.38805	HepG2	SUGP2
chr15	65974876	65974938	-	intron-Distal	3.46373	4.16915	HepG2	HLTF
chr15	66073401	66073467	-	intron-Distal	3.37482	3.30744	K562	PTBP1
chr15	65999661	65999713	-	intron-Distal	3.87074	3.20552	HepG2	KHSRP
chr15	65995592	65995650	-	intron-Distal	3.32809	3.06005	HepG2	QKI
chr15	66080748	66080846	-	intron-Distal	3.99084	7.22647	K562	QKI
chr15	66084158	66084254	-	intron-Distal	4.02086	4.50290	K562	GTF2F1
chr15	66073528	66073577	-	intron-Distal	4.47809	5.65979	HepG2	PTBP1
chr15	66060117	66060171	-	intron-Distal	3.45966	5.34873	K562	KHSRP
chr15	66083955	66084049	-	intron-Distal	3.35855	15.80690	K562	DROSHA
chr15	66036509	66036625	-	intron-Distal	4.27800	3.45817	K562	MATR3
chr15	66077396	66077454	-	intron-Distal	6.02944	13.56319	HepG2	HNRNPC
chr15	65999532	65999586	-	intron-Distal	3.18102	5.40232	HepG2	U2AF2
chr15	66083966	66084047	-	intron-Distal	3.67370	7.22172	HepG2	CSTF2T
chr15	66036423	66036491	-	intron-Distal	4.70725	7.09509	HepG2	SUGP2
chr15	66083987	66084015	-	intron-Distal	3.48750	5.76533	HepG2	PRPF4
chr15	66083954	66084062	-	intron-Distal	3.00031	6.76617	HepG2	NKRF
chr15	66043899	66044004	-	intron-Distal	3.73659	5.06208	K562	MATR3
chr15	66058563	66058579	-	intron-Distal	3.33745	3.89901	HepG2	HNRNPC
chr15	66073990	66074048	-	intron-Distal	3.82040	12.78768	HepG2	SUGP2
chr15	65981404	65981482	-	intron-Distal	4.44418	5.79169	K562	SAFB2
chr15	66070076	66070136	-	intron-Distal	6.13695	14.98391	K562	WRN
chr15	66084166	66084269	-	intron-Distal	4.27181	14.15589	HepG2	CSTF2T
chr15	66084036	66084062	-	intron-Distal	3.06596	3.47846	HepG2	PRPF4
chr15	66084015	66084036	-	intron-Distal	3.48132	5.89187	HepG2	PRPF4
chr15	65981895	65981965	-	intron-Distal	4.48175	4.72697	K562	SAFB2
chr15	66060735	66060758	-	intron-Distal	3.16684	3.57533	K562	KHSRP
chr15	66007712	66007808	-	intron-Distal,intron-Proximal	4.87284	5.85485	K562	KHSRP
chr15	66043912	66043984	-	intron-Distal	3.66826	3.59803	HepG2	PTBP1
chr15	66083958	66083987	-	intron-Distal	3.53868	3.12316	HepG2	PRPF4
chr15	66073866	66073911	-	intron-Distal	4.36896	3.27829	HepG2	MATR3
chr15	65999617	65999694	-	intron-Distal	4.14095	3.66668	K562	KHSRP
chr15	66077395	66077468	-	intron-Distal	3.55782	3.00023	K562	HNRNPC
chr15	65993149	65993261	-	intron-Distal	3.61409	4.70224	K562	KHSRP
chr15	66084200	66084260	-	intron-Distal	3.23541	7.68309	HepG2	FAM120A
chr15	65993027	65993145	-	intron-Distal,intron-Proximal	5.10736	5.60990	HepG2	KHSRP
chr15	66060043	66060101	-	intron-Distal	3.24192	3.76473	K562	KHSRP
chr15	66007698	66007795	-	intron-Distal,intron-Proximal	3.67691	4.35635	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for DENND4A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DENND4A is not available on ENCORE database.
136 RBPs can affect the levels of DENND4A.

The Knockdown/knockout RNA-Seq assay for DENND4A is not available on ENCORE database.

136 RBPs can affect the gene expression of DENND4A :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DENND4A	ENSG00000174485.10	1124.49460	841.95810	0.41740	3.51760	2.31890	HepG2	AATF
DENND4A	ENSG00000174485.10	1263.73460	1819.31420	-0.52570	4.39950	3.23130	HepG2	ABCF1
DENND4A	ENSG00000174485.10	652.28390	1093.89560	-0.74590	8.61720	6.98070	HepG2	ADAR
DENND4A	ENSG00000174485.10	2968.14970	1654.29970	0.84320	10.62170	9.64720	HepG2	AKAP1
DENND4A	ENSG00000174485.10	2108.51580	1642.17690	0.36050	3.53360	1.95730	HepG2	ATP5C1
DENND4A	ENSG00000174485.10	2341.61950	1726.95520	0.43920	7.96600	6.89850	HepG2	AUH
DENND4A	ENSG00000174485.10	584.15500	800.56220	-0.45470	2.38410	1.51560	HepG2	BCCIP
DENND4A	ENSG00000174485.10	919.89020	695.66280	0.40300	2.62450	1.74670	HepG2	BCLAF1
DENND4A	ENSG00000174485.10	2974.85270	1388.45960	1.09920	25.69060	24.17260	HepG2	BOP1
DENND4A	ENSG00000174485.10	3356.88920	1465.73900	1.19540	27.73690	25.81240	HepG2	CALR
DENND4A	ENSG00000174485.10	1504.33330	2228.37300	-0.56690	4.47110	3.21540	HepG2	CCAR1
DENND4A	ENSG00000174485.10	787.28060	1300.48150	-0.72410	6.87220	5.68890	HepG2	CIRBP
DENND4A	ENSG00000174485.10	2390.96000	1274.68080	0.90740	16.00750	14.52160	HepG2	CPSF6
DENND4A	ENSG00000174485.10	282.07350	494.55450	-0.81010	6.75090	5.18070	HepG2	CSTF2
DENND4A	ENSG00000174485.10	1229.11970	862.11840	0.51160	3.29270	1.76840	HepG2	CSTF2T
DENND4A	ENSG00000174485.10	1804.16870	1291.74200	0.48190	10.66500	9.35760	HepG2	DAZAP1
DENND4A	ENSG00000174485.10	1055.84420	1319.01330	-0.32110	4.29600	3.28460	HepG2	DDX19B
DENND4A	ENSG00000174485.10	671.04790	928.81490	-0.46900	4.02190	3.21810	HepG2	DDX21
DENND4A	ENSG00000174485.10	1268.83770	787.09980	0.68880	6.43250	5.31210	HepG2	DDX55
DENND4A	ENSG00000174485.10	2130.38110	1447.49390	0.55750	2.85110	1.85850	HepG2	DDX59
DENND4A	ENSG00000174485.10	1976.34940	1361.11690	0.53790	4.53470	3.76010	HepG2	DDX6
DENND4A	ENSG00000174485.10	886.73610	1364.44730	-0.62170	11.41320	10.23170	HepG2	DKC1
DENND4A	ENSG00000174485.10	1358.82110	1101.48150	0.30280	3.06800	2.33210	HepG2	DNAJC21
DENND4A	ENSG00000174485.10	1348.45140	1091.79700	0.30450	4.13690	3.37080	HepG2	DNAJC2
DENND4A	ENSG00000174485.10	698.09940	1116.85650	-0.67790	3.48460	2.45630	HepG2	EEF2
DENND4A	ENSG00000174485.10	1312.31460	855.38660	0.61740	2.97700	1.82190	HepG2	AGO1
DENND4A	ENSG00000174485.10	1744.54380	1308.73730	0.41460	3.24680	2.60700	HepG2	EIF2S1
DENND4A	ENSG00000174485.10	690.32790	877.18220	-0.34560	2.67300	1.61030	HepG2	EIF3G
DENND4A	ENSG00000174485.10	2398.25590	1408.06550	0.76820	3.63830	2.85520	HepG2	EIF4B
DENND4A	ENSG00000174485.10	1736.30740	1274.41970	0.44610	7.33950	6.09270	HepG2	EIF4G1
DENND4A	ENSG00000174485.10	1962.21230	1220.80590	0.68450	9.32890	7.86900	HepG2	EIF4G2
DENND4A	ENSG00000174485.10	1122.68430	1576.17440	-0.48950	4.56000	3.19190	HepG2	ESF1
DENND4A	ENSG00000174485.10	1636.32530	1982.79840	-0.27710	3.22460	2.58410	HepG2	ETF1
DENND4A	ENSG00000174485.10	1473.05810	885.17990	0.73470	10.99050	8.96440	HepG2	FASTKD2
DENND4A	ENSG00000174485.10	1272.83740	819.32770	0.63540	7.70540	6.43230	HepG2	FUBP3
DENND4A	ENSG00000174485.10	994.55360	1459.00850	-0.55290	4.72110	3.83340	HepG2	FXR1
DENND4A	ENSG00000174485.10	981.32970	1436.80510	-0.55010	4.37280	3.24110	HepG2	G3BP2
DENND4A	ENSG00000174485.10	453.15620	807.36210	-0.83320	5.02900	3.81960	HepG2	GEMIN5
DENND4A	ENSG00000174485.10	1724.96820	1361.60800	0.34120	4.81330	3.55840	HepG2	HDGF
DENND4A	ENSG00000174485.10	449.80760	1112.03450	-1.30580	25.18140	23.58180	HepG2	HNRNPA1
DENND4A	ENSG00000174485.10	1641.85630	1187.16860	0.46770	7.81720	6.38910	HepG2	HNRNPA2B1
DENND4A	ENSG00000174485.10	1494.86170	1236.94670	0.27310	1.90450	1.31740	HepG2	HNRNPC
DENND4A	ENSG00000174485.10	1780.19480	1468.98540	0.27710	3.28640	2.50940	HepG2	HNRNPF
DENND4A	ENSG00000174485.10	1402.03990	1176.66510	0.25270	3.11870	2.40560	HepG2	HNRNPL
DENND4A	ENSG00000174485.10	1816.68290	1378.94050	0.39760	3.31210	2.62950	HepG2	HNRNPLL
DENND4A	ENSG00000174485.10	774.05840	1228.76770	-0.66670	13.13540	11.89050	HepG2	HNRNPU
DENND4A	ENSG00000174485.10	1463.78430	1255.14310	0.22180	2.49810	1.79770	HepG2	ILF2
DENND4A	ENSG00000174485.10	1747.63210	2351.99120	-0.42850	2.86610	2.02180	HepG2	LARP4
DENND4A	ENSG00000174485.10	1003.77220	1459.51610	-0.54010	4.74770	3.89640	HepG2	MAGOH
DENND4A	ENSG00000174485.10	970.03460	1467.74740	-0.59750	3.25590	2.57550	HepG2	MATR3
DENND4A	ENSG00000174485.10	1505.52650	1280.89100	0.23300	1.97420	1.32670	HepG2	NOL12
DENND4A	ENSG00000174485.10	922.37300	1095.96020	-0.24880	2.02850	1.38890	HepG2	PPIL4
DENND4A	ENSG00000174485.10	1055.93010	1278.90910	-0.27640	2.75750	1.98480	HepG2	PRPF4
DENND4A	ENSG00000174485.10	688.79140	1222.73440	-0.82800	12.34330	11.20370	HepG2	PUF60
DENND4A	ENSG00000174485.10	1636.36220	1298.00040	0.33410	5.66180	4.87610	HepG2	PUM1
DENND4A	ENSG00000174485.10	744.71760	1452.62220	-0.96390	29.31590	27.69740	HepG2	PUS1
DENND4A	ENSG00000174485.10	2610.38690	1432.87760	0.86520	22.65360	21.11700	HepG2	QKI
DENND4A	ENSG00000174485.10	2122.40870	1145.10140	0.89010	6.60830	5.54400	HepG2	RAVER1
DENND4A	ENSG00000174485.10	3708.34610	2014.98980	0.87990	14.55080	12.82520	HepG2	RBM15
DENND4A	ENSG00000174485.10	2325.57180	1300.46490	0.83850	16.18280	14.63060	HepG2	RBM25
DENND4A	ENSG00000174485.10	1122.31400	1472.47030	-0.39180	4.97610	4.28680	HepG2	NELFE
DENND4A	ENSG00000174485.10	2316.64180	1582.46220	0.54980	2.48050	1.82840	HepG2	RPLP0
DENND4A	ENSG00000174485.10	625.88940	882.20240	-0.49520	2.27430	1.71130	HepG2	RPS19
DENND4A	ENSG00000174485.10	1336.31640	1957.92500	-0.55110	4.00970	3.04620	HepG2	RPS3A
DENND4A	ENSG00000174485.10	1364.19160	600.74470	1.18310	17.23320	15.57950	HepG2	RRP9
DENND4A	ENSG00000174485.10	1278.36830	1094.26380	0.22420	2.27170	1.67890	HepG2	SAFB2
DENND4A	ENSG00000174485.10	2548.69040	1364.87750	0.90090	16.65810	15.08280	HepG2	SF3B1
DENND4A	ENSG00000174485.10	1665.94380	1377.45980	0.27420	3.23340	2.60090	HepG2	SF3B4
DENND4A	ENSG00000174485.10	1429.13250	1172.44010	0.28550	3.78110	2.98100	HepG2	SLBP
DENND4A	ENSG00000174485.10	1083.68670	1276.08270	-0.23580	2.64450	2.01240	HepG2	SMN1
DENND4A	ENSG00000174485.10	1649.73140	1165.94490	0.50060	3.08450	2.06820	HepG2	SMNDC1
DENND4A	ENSG00000174485.10	3731.95410	1871.79200	0.99540	49.69050	48.25900	HepG2	SRFBP1
DENND4A	ENSG00000174485.10	1143.25180	1437.80300	-0.33070	3.91320	3.37480	HepG2	SRSF1
DENND4A	ENSG00000174485.10	1952.92810	1468.61640	0.41110	2.62430	1.65260	HepG2	SRSF3
DENND4A	ENSG00000174485.10	1425.99060	1207.28870	0.24010	2.50650	1.90650	HepG2	SRSF5
DENND4A	ENSG00000174485.10	1872.14120	1443.23080	0.37530	5.42300	4.50290	HepG2	SRSF7
DENND4A	ENSG00000174485.10	2460.96360	1169.75780	1.07290	46.92620	45.20680	HepG2	SRSF9
DENND4A	ENSG00000174485.10	979.04480	1625.14400	-0.73110	18.30920	17.23730	HepG2	SSB
DENND4A	ENSG00000174485.10	1830.02420	1227.32420	0.57620	4.81080	3.22330	HepG2	STAU1
DENND4A	ENSG00000174485.10	1935.87370	1070.04220	0.85520	7.51300	5.59340	HepG2	SUB1
DENND4A	ENSG00000174485.10	1584.65400	1373.00570	0.20670	2.29680	1.72030	HepG2	SUCLG1
DENND4A	ENSG00000174485.10	1920.28520	1240.74620	0.63000	9.97150	8.28990	HepG2	SUPT6H
DENND4A	ENSG00000174485.10	1116.49030	783.57610	0.51070	3.66440	2.90160	HepG2	SUPV3L1
DENND4A	ENSG00000174485.10	1572.94240	1292.44520	0.28330	2.86210	2.29230	HepG2	TAF15
DENND4A	ENSG00000174485.10	1874.56870	1344.04560	0.47990	4.95350	4.02400	HepG2	TARDBP
DENND4A	ENSG00000174485.10	1009.72190	2722.24640	-1.43080	9.59590	7.74130	HepG2	TBRG4
DENND4A	ENSG00000174485.10	2135.19550	1187.48360	0.84640	6.35580	5.09400	HepG2	TIA1
DENND4A	ENSG00000174485.10	697.33440	1193.92520	-0.77580	12.92880	11.98460	HepG2	TIAL1
DENND4A	ENSG00000174485.10	977.48650	1194.58240	-0.28940	2.11460	1.35920	HepG2	TUFM
DENND4A	ENSG00000174485.10	2522.47500	1264.46150	0.99620	7.29490	5.90900	HepG2	UBE2L3
DENND4A	ENSG00000174485.10	390.11150	717.59600	-0.87930	5.66350	4.18810	HepG2	UPF2
DENND4A	ENSG00000174485.10	1932.88930	1125.51090	0.78010	6.57690	4.64990	HepG2	XRCC5
DENND4A	ENSG00000174485.10	301.80050	771.34380	-1.35380	17.93120	16.13740	HepG2	XRN2
DENND4A	ENSG00000174485.10	2048.40840	1262.10220	0.69860	21.41400	19.86770	HepG2	ZC3H8
DENND4A	ENSG00000174485.10	2563.13980	1646.93560	0.63800	22.42490	21.23590	HepG2	ZNF622
DENND4A	ENSG00000174485.10	1119.85520	733.69900	0.61000	6.21580	4.38380	K562	AARS
DENND4A	ENSG00000174485.10	394.35170	1608.29140	-2.02800	12.61000	11.49420	K562	AGGF1
DENND4A	ENSG00000174485.10	906.63120	1766.95430	-0.96270	5.07480	3.64600	K562	AKAP8
DENND4A	ENSG00000174485.10	534.66650	1673.42270	-1.64610	9.73340	8.41420	K562	AKAP8L
DENND4A	ENSG00000174485.10	1187.11990	1472.75140	-0.31100	2.24310	1.70580	K562	AQR
DENND4A	ENSG00000174485.10	813.33560	1755.67680	-1.11010	5.50990	4.16850	K562	ATP5C1
DENND4A	ENSG00000174485.10	1470.92620	1147.07410	0.35870	2.63680	1.78570	K562	BOP1
DENND4A	ENSG00000174485.10	1529.97880	1822.85320	-0.25270	2.64680	1.56540	K562	CPEB4
DENND4A	ENSG00000174485.10	3071.29300	2567.84080	0.25820	3.17640	2.13410	K562	CELF1
DENND4A	ENSG00000174485.10	2465.43880	1886.27200	0.38620	6.49000	5.55070	K562	DDX47
DENND4A	ENSG00000174485.10	363.04950	575.14760	-0.66380	3.06660	1.67040	K562	DDX6
DENND4A	ENSG00000174485.10	850.63240	1801.20840	-1.08240	5.60580	4.30510	K562	DKC1
DENND4A	ENSG00000174485.10	1091.44520	732.91910	0.57440	4.30540	2.67560	K562	EEF2
DENND4A	ENSG00000174485.10	730.33420	475.57000	0.61880	2.96590	1.92160	K562	EIF3A
DENND4A	ENSG00000174485.10	331.29820	517.28620	-0.64280	2.87520	1.55590	K562	EWSR1
DENND4A	ENSG00000174485.10	1072.91920	1414.98480	-0.39920	2.82040	1.96310	K562	FIP1L1
DENND4A	ENSG00000174485.10	811.71500	616.31970	0.39720	2.15610	1.61000	K562	FXR1
DENND4A	ENSG00000174485.10	533.37600	927.35580	-0.79800	10.72350	7.86330	K562	G3BP1
DENND4A	ENSG00000174485.10	892.94800	670.08300	0.41410	2.24460	1.61750	K562	G3BP2
DENND4A	ENSG00000174485.10	829.52170	1524.21240	-0.87770	4.69550	3.71190	K562	GRSF1
DENND4A	ENSG00000174485.10	536.21980	1374.06530	-1.35760	10.17600	7.33730	K562	HNRNPA2B1
DENND4A	ENSG00000174485.10	1037.63750	803.08140	0.36960	2.89630	2.28840	K562	HNRNPC
DENND4A	ENSG00000174485.10	734.60810	968.77380	-0.39920	2.74220	1.51450	K562	HNRNPK
DENND4A	ENSG00000174485.10	583.51140	969.97330	-0.73320	6.41770	4.57550	K562	IGF2BP2
DENND4A	ENSG00000174485.10	613.88200	1776.19120	-1.53280	8.81920	7.13000	K562	KIF1C
DENND4A	ENSG00000174485.10	709.84190	1019.40810	-0.52220	5.39470	4.20730	K562	MAGOH
DENND4A	ENSG00000174485.10	698.01680	1700.03180	-1.28420	5.26650	3.61990	K562	MAK16
DENND4A	ENSG00000174485.10	793.87890	1989.74490	-1.32560	5.76660	4.36570	K562	MBNL1
DENND4A	ENSG00000174485.10	1043.76690	1246.96700	-0.25660	2.46270	1.69890	K562	MTPAP
DENND4A	ENSG00000174485.10	405.01250	1394.64320	-1.78390	9.92390	7.85580	K562	NAA15
DENND4A	ENSG00000174485.10	412.56210	708.88800	-0.78090	6.98140	4.15900	K562	PABPC4
DENND4A	ENSG00000174485.10	431.21210	1202.24630	-1.47930	11.61890	9.10460	K562	PABPN1
DENND4A	ENSG00000174485.10	615.58700	996.46650	-0.69490	9.38910	6.87910	K562	PCBP1
DENND4A	ENSG00000174485.10	1705.47550	1193.01330	0.51550	4.57280	3.50550	K562	PCBP3
DENND4A	ENSG00000174485.10	1243.94580	915.12770	0.44280	4.80030	3.74450	K562	POLR2G
DENND4A	ENSG00000174485.10	937.93210	1606.16140	-0.77610	7.45490	5.96770	K562	PPIG
DENND4A	ENSG00000174485.10	588.42360	1429.65960	-1.28070	8.41180	5.40610	K562	PPP1R8
DENND4A	ENSG00000174485.10	464.57510	720.01380	-0.63210	5.67060	4.30310	K562	PSIP1
DENND4A	ENSG00000174485.10	392.71310	1660.13020	-2.07970	12.93880	11.81180	K562	PUS1
DENND4A	ENSG00000174485.10	397.93600	1617.08760	-2.02280	12.23930	10.99670	K562	RBM15
DENND4A	ENSG00000174485.10	761.36920	949.69550	-0.31890	2.15630	1.41880	K562	RBM22
DENND4A	ENSG00000174485.10	762.64160	1479.13160	-0.95570	4.79010	2.62330	K562	RBM39
DENND4A	ENSG00000174485.10	1358.64960	999.40200	0.44290	3.72090	2.43190	K562	NELFE
DENND4A	ENSG00000174485.10	1091.18300	702.04010	0.63620	5.77080	4.58630	K562	RPS19
DENND4A	ENSG00000174485.10	1056.78550	647.09900	0.70750	7.06280	5.36900	K562	RPS3
DENND4A	ENSG00000174485.10	1261.64960	842.94540	0.58170	4.04110	2.26230	K562	SDAD1
DENND4A	ENSG00000174485.10	380.51190	1099.67390	-1.53110	10.14790	7.38420	K562	SF1
DENND4A	ENSG00000174485.10	1598.65130	1367.12130	0.22560	2.13020	1.40750	K562	SF3A3
DENND4A	ENSG00000174485.10	593.53170	1262.61430	-1.08900	6.17440	4.09940	K562	SNRNP200
DENND4A	ENSG00000174485.10	567.87520	916.97840	-0.69130	7.57240	5.73110	K562	SRSF5
DENND4A	ENSG00000174485.10	2371.00540	1856.67870	0.35270	2.88710	1.49660	K562	SSRP1
DENND4A	ENSG00000174485.10	732.71620	947.88200	-0.37150	2.98340	2.12870	K562	TIA1
DENND4A	ENSG00000174485.10	617.73010	930.15170	-0.59050	3.65690	2.37000	K562	TRA2A
DENND4A	ENSG00000174485.10	447.74860	650.10480	-0.53800	3.45980	2.20900	K562	U2AF1
DENND4A	ENSG00000174485.10	1017.75520	706.26100	0.52700	4.60870	3.26330	K562	UCHL5
DENND4A	ENSG00000174485.10	590.41490	1682.63850	-1.51090	8.84120	6.23640	K562	UTP18
DENND4A	ENSG00000174485.10	1701.49710	1307.17110	0.38030	6.32480	5.09490	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DENND4A is not available on ENCORE database.

11 RBPs can affect the splicing of DENND4A :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	DENND4A	ENSG00000174485.10	chr15	-	65992881	65993010	65989604	65989721	65993388	65993530	-0.25800	0.00000	0.00009	excluded	K562	SRSF1
SE	DENND4A	ENSG00000174485.10	chr15	-	66053697	66053776	66048477	66048810	66084347	66084631	-0.33500	0.00212	0.05563	excluded	K562	AKAP8L
SE	DENND4A	ENSG00000174485.10	chr15	-	66051147	66051230	66048477	66048810	66053697	66053776	0.14000	0.00017	0.00313	included	HepG2	U2AF2
SE	DENND4A	ENSG00000174485.10	chr15	-	65992881	65993010	65989604	65989721	65993388	65993530	0.23200	0.00000	0.00000	included	HepG2	U2AF2
SE	DENND4A	ENSG00000174485.10	chr15	-	66021871	66022016	66021409	66021585	66023979	66024038	-0.17800	0.00094	0.01344	excluded	HepG2	U2AF2
SE	DENND4A	ENSG00000174485.10	chr15	-	65992881	65993010	65989604	65989721	65993388	65993530	-0.18400	0.00002	0.00652	excluded	K562	DROSHA
SE	DENND4A	ENSG00000174485.10	chr15	-	66053697	66053776	66048477	66048810	66084347	66084545	-0.48400	0.00002	0.00055	excluded	K562	PUS1
SE	DENND4A	ENSG00000174485.10	chr15	-	66034052	66034122	66031043	66031213	66044716	66044966	-0.14200	0.00073	0.01321	excluded	K562	PUS1
SE	DENND4A	ENSG00000174485.10	chr15	-	65992881	65993010	65989604	65989721	65993388	65993530	0.33400	0.00000	0.00143	included	HepG2	PCBP2
SE	DENND4A	ENSG00000174485.10	chr15	-	65992881	65993010	65989604	65989721	65993388	65993530	0.18800	0.00032	0.05414	included	HepG2	RBM15
SE	DENND4A	ENSG00000174485.10	chr15	-	65992881	65993010	65989604	65989721	65993388	65993530	-0.29100	0.00001	0.00054	excluded	HepG2	SRSF1
SE	DENND4A	ENSG00000174485.10	chr15	-	66034052	66034122	66031043	66031213	66044716	66044966	-0.21000	0.00164	0.04939	excluded	K562	UTP18
SE	DENND4A	ENSG00000174485.10	chr15	-	66034052	66034122	66031043	66031213	66044716	66044966	-0.15000	0.00091	0.02543	excluded	K562	RBM15
SE	DENND4A	ENSG00000174485.10	chr15	-	66053697	66053776	66048477	66048810	66084347	66084545	-0.21200	0.00017	0.00700	excluded	K562	AGGF1
A3SS	DENND4A	ENSG00000174485.10	chr15	-	65962116	65962284	65962116	65962263	65962350	65962526	0.09400	0.00010	0.01218	longer	HepG2	SF3A3
A3SS	DENND4A	ENSG00000174485.10	chr15	-	65962116	65962284	65962116	65962263	65962350	65962526	0.16900	0.00004	0.00727	longer	HepG2	RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DENND4A

General Information

Functions

Localization

Domains (AlphaFold: DENND4A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DENND4A is not avaliable on ENCORE database.

35 proteins are bound to DENND4A RNA:

eCLIP assay for DENND4A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DENND4A is not available on ENCORE database.

136 RBPs can affect the gene expression of DENND4A :

The Knockdown/knockout RNA-Seq assay for DENND4A is not available on ENCORE database.

11 RBPs can affect the splicing of DENND4A :

The Knockdown/knockout RNA-Seq assay for DENND4A is not avaliable on ENCORE database.