RPS27

General Information

Gene Name : RPS27
Gene ID : ENSG00000177954.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPS27)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPS27	ENSG00000177954.12	11523.42	9391.32	10457.37	ENCSR000AEF
HepG2	RPS27	ENSG00000177954.12	4057.44	6487.54	5272.49	ENCSR985KAT
K562	RPS27	ENSG00000177954.12	6851.94	6188.50	6520.22	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPS27 is not avaliable on ENCORE database.

Proteins bound to RNA

RPS27 RNA is bound by 16 proteins.

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eCLIP assay for RPS27 is not avaliable on ENCORE database.

16 proteins are bound to RPS27 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	153964041	153964047	+	3'-UTR,CDS,intron-Proximal	3.52211	400.00000	K562	YBX3
chr1	153964047	153964053	+	3'-UTR,CDS	3.14175	400.00000	K562	YBX3
chr1	153964053	153964061	+	3'-UTR,CDS	3.12981	400.00000	K562	YBX3
chr1	153963269	153963279	+	5'-UTR,CDS,intron-Proximal	3.92510	400.00000	K562	PABPC4
chr1	153963238	153963278	+	5'-UTR,CDS	3.78813	400.00000	K562	YBX3
chr1	153963239	153963269	+	5'-UTR	4.68709	400.00000	K562	PABPC4
chr1	153963672	153963696	+	CDS	3.47922	400.00000	K562	YBX3
chr1	153963696	153963699	+	CDS	3.51788	400.00000	K562	YBX3
chr1	153963673	153963699	+	CDS	3.74417	82.44213	K562	PABPC4
chr1	153964041	153964056	+	3'-UTR,CDS,intron-Proximal	3.73248	79.09003	K562	PABPC4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for RPS27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPS27 is not available on ENCORE database.
149 RBPs can affect the levels of RPS27.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPS27 is not available on ENCORE database.

149 RBPs can affect the gene expression of RPS27 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPS27	ENSG00000177954.7	6971.32480	21388.82330	-1.61740	154.49420	152.01030	HepG2	PTBP1
RPS27	ENSG00000177954.7	8686.96150	23242.67960	-1.41990	147.34350	145.25800	HepG2	SRSF1
RPS27	ENSG00000177954.7	9095.51480	23803.09420	-1.38790	124.04780	121.87170	HepG2	NELFE
RPS27	ENSG00000177954.7	3408.06220	8703.11890	-1.35260	117.60390	115.18030	HepG2	ACO1
RPS27	ENSG00000177954.7	9769.43610	23163.05270	-1.24550	67.44920	65.17720	HepG2	QKI
RPS27	ENSG00000177954.7	11677.97710	22267.20390	-0.93110	59.38800	57.34370	HepG2	SF3B4
RPS27	ENSG00000177954.7	7899.47320	25929.17630	-1.71470	51.83700	49.34430	HepG2	NCBP2
RPS27	ENSG00000177954.7	9072.32640	21022.55270	-1.21240	47.12060	44.65170	HepG2	RBM25
RPS27	ENSG00000177954.7	8068.43750	25332.03370	-1.65060	45.60320	43.30780	HepG2	MATR3
RPS27	ENSG00000177954.7	7948.22440	25190.51490	-1.66420	45.34230	42.95940	HepG2	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 178 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPS27 is not available on ENCORE database.

8 RBPs can affect the splicing of RPS27 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	RPS27	ENSG00000177954.7	chr1	+	153963469	153963699	153963469	153963510	153963590	153963699	-0.13800	0.00004	0.00788	excluded	K562	UPF1
RI	RPS27	ENSG00000177954.7	chr1	+	153963238	153963510	153963238	153963278	153963389	153963510	0.21700	0.00010	0.00273	included	K562	FXR1
RI	RPS27	ENSG00000177954.7	chr1	+	153963238	153963510	153963238	153963278	153963389	153963510	-0.17400	0.00015	0.02743	excluded	K562	DDX55
RI	RPS27	ENSG00000177954.7	chr1	+	153963238	153963510	153963238	153963278	153963389	153963510	0.17400	0.00025	0.00731	included	HepG2	PCBP2
RI	RPS27	ENSG00000177954.7	chr1	+	153963238	153963510	153963238	153963278	153963389	153963510	0.15900	0.00074	0.09665	included	HepG2	DKC1
RI	RPS27	ENSG00000177954.7	chr1	+	153963238	153963510	153963238	153963278	153963389	153963510	-0.19700	0.00080	0.03718	excluded	K562	SUPV3L1
RI	RPS27	ENSG00000177954.7	chr1	+	153963238	153963510	153963238	153963278	153963389	153963510	-0.11900	0.00092	0.06668	excluded	K562	ZC3H8
RI	RPS27	ENSG00000177954.7	chr1	+	153963238	153963510	153963238	153963278	153963389	153963510	-0.11500	0.00326	0.08544	excluded	K562	HNRNPUL1

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPS27

General Information

Functions

Localization

Domains (AlphaFold: RPS27)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPS27 is not avaliable on ENCORE database.

16 proteins are bound to RPS27 RNA:

eCLIP assay for RPS27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPS27 is not available on ENCORE database.

149 RBPs can affect the gene expression of RPS27 :

The Knockdown/knockout RNA-Seq assay for RPS27 is not available on ENCORE database.

8 RBPs can affect the splicing of RPS27 :

The Knockdown/knockout RNA-Seq assay for RPS27 is not avaliable on ENCORE database.