IGSF1

General Information

Gene Name : IGSF1
Gene ID : ENSG00000147255.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: IGSF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	IGSF1	ENSG00000147255.18	0.00	0.00	0.00	ENCSR000AEF
HepG2	IGSF1	ENSG00000147255.18	58.09	71.19	64.64	ENCSR985KAT
K562	IGSF1	ENSG00000147255.18	0.95	1.00	0.97	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for IGSF1 is not avaliable on ENCORE database.

Proteins bound to RNA

IGSF1 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for IGSF1 is not avaliable on ENCORE database.

15 proteins are bound to IGSF1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	130411721	130411809	-	intron-Distal,intron-Proximal	4.27064	23.77392	HepG2	EFTUD2
chrX	130407688	130407767	-	3'-UTR,intron-Distal	4.57162	19.44512	HepG2	LARP4
chrX	130418500	130418591	-	3'-UTR,intron-Distal	4.64852	18.63906	HepG2	UPF1
chrX	130407542	130407676	-	3'-UTR,intron-Distal	3.09119	10.91528	HepG2	LARP4
chrX	130420655	130420690	-	3'-UTR,5'-UTR,intron-Distal	3.80811	10.35001	HepG2	GRWD1
chrX	130418591	130418660	-	3'-UTR,intron-Distal	5.28972	9.75816	HepG2	UPF1
chrX	130418179	130418273	-	3'-UTR,intron-Distal	4.52669	9.57801	HepG2	UPF1
chrX	130418174	130418248	-	3'-UTR,intron-Distal	5.28531	8.89452	HepG2	AKAP1
chrX	130418420	130418500	-	3'-UTR,intron-Distal	4.34037	8.73365	HepG2	UPF1
chrX	130409644	130409709	-	CDS,intron-Distal	4.51338	8.63502	HepG2	RPS3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 47 entries

eCLIP assay for IGSF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for IGSF1 is not available on ENCORE database.
151 RBPs can affect the levels of IGSF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for IGSF1 is not available on ENCORE database.

151 RBPs can affect the gene expression of IGSF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
IGSF1	ENSG00000147255.13	2598.26890	17038.50580	-2.71320	99999.99999	99999.99999	HepG2	NELFE
IGSF1	ENSG00000147255.13	993.83180	17915.70880	-4.17210	215.82170	212.63680	HepG2	AKAP1
IGSF1	ENSG00000147255.13	891.72240	5552.45470	-2.63850	172.78580	170.04150	HepG2	ACO1
IGSF1	ENSG00000147255.13	1149.64380	3883.69600	-1.75620	169.85600	166.69220	HepG2	SMN1
IGSF1	ENSG00000147255.13	5058.59820	15868.81430	-1.64940	169.35950	166.26490	HepG2	RECQL
IGSF1	ENSG00000147255.13	10465.66160	1658.23590	2.65780	146.90490	143.31400	HepG2	TARDBP
IGSF1	ENSG00000147255.13	9696.65360	1682.96470	2.52640	135.29720	132.07700	HepG2	SF3B1
IGSF1	ENSG00000147255.13	8234.28300	3330.36050	1.30590	115.58430	112.69050	HepG2	SAFB2
IGSF1	ENSG00000147255.13	7553.51120	1508.01740	2.32440	112.38240	109.16980	HepG2	NSUN2
IGSF1	ENSG00000147255.13	7162.12560	16637.58040	-1.21600	110.39730	108.47160	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 162 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for IGSF1 is not available on ENCORE database.

7 RBPs can affect the splicing of IGSF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	IGSF1	ENSG00000147255.13	chrX	-	130414848	130415028			130413244	130413315	130415191	130415320	0.20000	0.00000	0.00000	included	HepG2	HNRNPK
SE	IGSF1	ENSG00000147255.13	chrX	-	130420410	130420437			130419740	130420022	130420578	130420715	-0.14700	0.00000	0.00000	excluded	HepG2	SF3A3
SE	IGSF1	ENSG00000147255.13	chrX	-	130420410	130420437			130419740	130420022	130420578	130420715	-0.20000	0.00000	0.00000	excluded	HepG2	SF3B4
SE	IGSF1	ENSG00000147255.13	chrX	-	130414848	130415028			130413244	130413315	130415191	130415320	0.08600	0.00000	0.00001	included	HepG2	SLTM
SE	IGSF1	ENSG00000147255.13	chrX	-	130414848	130415028			130413244	130413315	130415191	130415320	0.05300	0.00003	0.00393	included	HepG2	HNRNPL
SE	IGSF1	ENSG00000147255.13	chrX	-	130413116	130413164			130412434	130412725	130413244	130413315	-0.05800	0.00025	0.00990	excluded	HepG2	SF3A3
SE	IGSF1	ENSG00000147255.13	chrX	-	130413054	130413164			130412434	130412725	130413244	130413315	-0.07300	0.00211	0.07276	excluded	HepG2	MATR3
SE	IGSF1	ENSG00000147255.13	chrX	-	130413054	130413164			130412434	130412725	130413244	130413315	-0.05200	0.00278	0.09917	excluded	HepG2	SF3B4
MXE	IGSF1	ENSG00000147255.13	chrX	-	130408972	130409011	130409068	130409260	130408572	130408740	130409451	130409739	0.09700	0.00308	0.02050	1included	HepG2	U2AF2

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

IGSF1

General Information

Functions

Localization

Domains (AlphaFold: IGSF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for IGSF1 is not avaliable on ENCORE database.

15 proteins are bound to IGSF1 RNA:

eCLIP assay for IGSF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for IGSF1 is not available on ENCORE database.

151 RBPs can affect the gene expression of IGSF1 :

The Knockdown/knockout RNA-Seq assay for IGSF1 is not available on ENCORE database.

7 RBPs can affect the splicing of IGSF1 :

The Knockdown/knockout RNA-Seq assay for IGSF1 is not avaliable on ENCORE database.