ECM1

General Information

Gene Name       : ECM1
Gene ID             : ENSG00000143369.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ECM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ECM1ENSG00000143369.140.700.570.64ENCSR000AEF
HepG2ECM1ENSG00000143369.140.861.040.95ENCSR985KAT
K562ECM1ENSG00000143369.1442.9535.1039.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ECM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ECM1 RNA is bound by 3 proteins.  







eCLIP assay for ECM1 is not avaliable on ENCORE database.





3 proteins are bound to ECM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1150480602150480726+5'-UTR,CDS4.037286.82597K562DDX3X
chr1150485205150485284+CDS3.919438.32138K562SND1
chr1150484098150484194+CDS,intron-Distal5.047768.28112K562RBM15
chr1150485820150485874+CDS5.171457.19329K562SND1
chr1150485714150485815+CDS5.2418812.45981K562SND1
chr1150484171150484293+CDS,intron-Distal3.250223.10185K562SND1
chr1150483581150483648+CDS3.037164.12588K562SND1
chr1150484837150485009+CDS3.422169.22849K562SND1
chr1150484697150484753+intron-Distal,intron-Proximal4.538645.17013K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ECM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ECM1 is not available on ENCORE database.

  • 131 RBPs can affect the levels of ECM1.  








The Knockdown/knockout RNA-Seq assay for ECM1 is not available on ENCORE database.





131 RBPs can affect the gene expression of ECM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ECM1ENSG00000143369.10197.7774051.156201.9508017.6603016.40630HepG2ACO1
ECM1ENSG00000143369.10119.7866057.334201.062903.998302.75070HepG2AKAP8
ECM1ENSG00000143369.1053.0665015.517701.773804.020503.08050HepG2ASCC1
ECM1ENSG00000143369.10101.3035050.830900.994803.531602.77270HepG2AUH
ECM1ENSG00000143369.10140.1113077.683000.850802.787501.80730HepG2CCAR1
ECM1ENSG00000143369.10269.4960067.244302.0027023.7666022.26440HepG2CELF1
ECM1ENSG00000143369.1024.0038047.31920-0.979202.067701.33730HepG2DDX19B
ECM1ENSG00000143369.1041.3353017.965801.202001.870801.34580HepG2DDX3X
ECM1ENSG00000143369.10607.3643042.120503.8499058.3091055.59650HepG2DDX55
ECM1ENSG00000143369.1041.2019015.430301.416802.313901.74470HepG2DDX6
ECM1ENSG00000143369.1088.1310052.798100.739102.037501.42430HepG2DNAJC21
ECM1ENSG00000143369.1038.1340016.397001.217501.905801.37120HepG2EIF4A3
ECM1ENSG00000143369.1040.1380015.962401.330201.893101.31680HepG2EIF4B
ECM1ENSG00000143369.10124.4845058.366501.092703.189802.55180HepG2ETF1
ECM1ENSG00000143369.10503.7536075.476202.7385034.0144031.90390HepG2FIP1L1
ECM1ENSG00000143369.1033.0927012.615101.391301.980001.30580HepG2FUBP3
ECM1ENSG00000143369.1065.1946016.540001.978705.459104.50930HepG2FXR1
ECM1ENSG00000143369.10107.9357015.345302.814205.385804.46970HepG2G3BP1
ECM1ENSG00000143369.10183.9559042.801802.103509.634807.69890HepG2GNB2L1
ECM1ENSG00000143369.10278.3224066.448702.0663025.0415022.81900HepG2HNRNPA2B1
ECM1ENSG00000143369.1041.1397015.533801.405002.258901.62360HepG2HNRNPK
ECM1ENSG00000143369.10121.6423052.030801.225104.645703.44710HepG2HNRNPM
ECM1ENSG00000143369.1051.3561094.69990-0.882802.826602.09420HepG2IGF2BP1
ECM1ENSG00000143369.1046.0549015.598901.561803.026402.32540HepG2IGF2BP2
ECM1ENSG00000143369.1049.0222015.688501.643603.216502.12490HepG2KHSRP
ECM1ENSG00000143369.1040.2766016.545801.283402.058801.48910HepG2MAGOH
ECM1ENSG00000143369.1081.1315025.491201.670203.366502.20890HepG2METAP2
ECM1ENSG00000143369.10390.5370061.014702.6781036.0582033.70330HepG2MSI2
ECM1ENSG00000143369.1043.3876017.031501.349002.298401.71880HepG2NCBP2
ECM1ENSG00000143369.1019.2269060.58150-1.655803.557102.70890HepG2NSUN2
ECM1ENSG00000143369.1036.5886015.170001.270101.970801.35280HepG2PABPC4
ECM1ENSG00000143369.10285.5377019.905603.8423032.1897030.73350HepG2PTBP1
ECM1ENSG00000143369.10136.8170052.108101.392607.776506.83040HepG2PUS1
ECM1ENSG00000143369.10165.4987036.613502.1763010.606909.29250HepG2RAVER1
ECM1ENSG00000143369.10252.9583048.782402.374405.818305.13620HepG2RBM22
ECM1ENSG00000143369.1081.8440022.145601.885806.699505.92070HepG2NELFE
ECM1ENSG00000143369.10105.3906047.593601.146803.846302.56390HepG2RPS5
ECM1ENSG00000143369.1024.3773067.63410-1.472203.541102.75230HepG2SF3B1
ECM1ENSG00000143369.1051.1610020.708301.304702.837102.23910HepG2SF3B4
ECM1ENSG00000143369.10157.6704061.171001.365908.537807.50610HepG2SMN1
ECM1ENSG00000143369.1072.4176015.134602.258404.978003.08610HepG2SNRNP200
ECM1ENSG00000143369.1034.5310075.25360-1.123902.415701.68760HepG2SNRNP70
ECM1ENSG00000143369.1045.1471017.595901.359303.174002.59120HepG2SRSF9
ECM1ENSG00000143369.1018.7374047.83250-1.352102.936102.41170HepG2SSB
ECM1ENSG00000143369.10127.7966041.913301.608304.886704.02660HepG2SUPV3L1
ECM1ENSG00000143369.1091.3029017.632002.372405.161903.79010HepG2U2AF2
ECM1ENSG00000143369.10105.5502050.336401.068203.856303.16730HepG2UTP3
ECM1ENSG00000143369.10121.2063057.341001.079704.958304.27950HepG2ZNF622
ECM1ENSG00000143369.101370.82750834.100500.716705.904904.11060K562AARS
ECM1ENSG00000143369.101808.749301026.540500.8171021.7071020.22490K562AGGF1
ECM1ENSG00000143369.10354.24840621.51580-0.8110011.407508.47650K562AKAP1
ECM1ENSG00000143369.103246.209401068.149201.6035020.8991018.77010K562AKAP8L
ECM1ENSG00000143369.10719.684401466.29050-1.0267016.8817015.59330K562AQR
ECM1ENSG00000143369.10816.12420607.292700.426304.641901.92510K562ASCC1
ECM1ENSG00000143369.10843.608001120.72150-0.409804.645303.42560K562ATP5C1
ECM1ENSG00000143369.101321.49830770.851100.7776017.1505014.75530K562BCLAF1
ECM1ENSG00000143369.103083.192401226.813801.3294033.3662030.04110K562CCDC124
ECM1ENSG00000143369.101811.47120789.551001.1980025.7689022.77360K562CIRBP
ECM1ENSG00000143369.102327.972801776.512600.389903.099501.92320K562CPEB4
ECM1ENSG00000143369.101363.481601078.189600.338602.900402.09860K562CPSF6
ECM1ENSG00000143369.10545.463501118.14120-1.0355012.128608.73230K562YBX3
ECM1ENSG00000143369.10400.40970584.80540-0.546504.486503.09950K562CSTF2
ECM1ENSG00000143369.10359.49070675.91470-0.9109014.7975012.02360K562DDX27
ECM1ENSG00000143369.101048.92090737.402600.508304.062201.55830K562DDX28
ECM1ENSG00000143369.101308.73620629.719101.0553021.1052018.18920K562DDX3X
ECM1ENSG00000143369.10443.964901838.65630-2.0501060.1565057.53200K562DDX47
ECM1ENSG00000143369.10865.940501146.04950-0.404302.915501.54850K562DHX30
ECM1ENSG00000143369.10721.703201166.88910-0.693203.866401.74710K562DNAJC2
ECM1ENSG00000143369.101097.64200714.313400.619704.310902.67950K562EEF2
ECM1ENSG00000143369.101121.75380690.083900.700807.643406.05870K562EFTUD2
ECM1ENSG00000143369.10907.49710691.641500.391804.093802.60570K562EIF2S1
ECM1ENSG00000143369.10226.080801041.29550-2.2035030.2163027.42030K562EIF3A
ECM1ENSG00000143369.10444.65650738.73050-0.732403.554702.36700K562EIF3D
ECM1ENSG00000143369.10278.21930465.43460-0.742404.695703.67100K562EIF3G
ECM1ENSG00000143369.10462.45310657.88220-0.508504.049103.05750K562EIF4A3
ECM1ENSG00000143369.10791.33190592.440600.417503.911302.49820K562EIF4B
ECM1ENSG00000143369.10530.437001117.56240-1.075106.971303.82290K562EIF4G1
ECM1ENSG00000143369.101374.124701992.66310-0.536209.765408.03970K562EIF4G2
ECM1ENSG00000143369.10929.55930614.438400.597204.484502.30660K562FAM120A
ECM1ENSG00000143369.101424.968001138.386400.323802.495701.69130K562FIP1L1
ECM1ENSG00000143369.10538.01370792.27240-0.558404.227102.78780K562FKBP4
ECM1ENSG00000143369.101861.017201097.020100.7624010.827809.07620K562FMR1
ECM1ENSG00000143369.101233.17400929.818100.407303.042802.07900K562FTO
ECM1ENSG00000143369.10557.94120684.16650-0.294202.018001.48510K562FXR1
ECM1ENSG00000143369.10137.70780381.44590-1.469907.501406.21860K562G3BP2
ECM1ENSG00000143369.101001.849001466.43560-0.549608.434406.53460K562GLRX3
ECM1ENSG00000143369.101369.760001029.410800.412002.613101.84020K562GPKOW
ECM1ENSG00000143369.10890.267401586.98720-0.8340014.1476012.41570K562GRSF1
ECM1ENSG00000143369.10340.579401056.24170-1.6329011.633109.65580K562HNRNPA1
ECM1ENSG00000143369.102025.09620912.811801.1495028.1454026.32260K562HNRNPC
ECM1ENSG00000143369.101444.43350815.081100.8254013.6059011.08570K562HNRNPF
ECM1ENSG00000143369.101213.820801710.54130-0.494905.450302.84950K562HNRNPH1
ECM1ENSG00000143369.101010.81810735.637600.458402.549501.36840K562HNRNPK
ECM1ENSG00000143369.10722.19390936.42610-0.374802.180101.35700K562HNRNPM
ECM1ENSG00000143369.10534.074101169.83500-1.131208.563007.00450K562HNRNPU
ECM1ENSG00000143369.10855.808401543.28820-0.8506011.530109.93430K562HSPD1
ECM1ENSG00000143369.101681.586101156.401800.540104.498002.17580K562IGF2BP1
ECM1ENSG00000143369.101310.45550737.206100.829808.815606.59190K562IGF2BP2
ECM1ENSG00000143369.10777.209101033.60710-0.411302.963601.42710K562KHDRBS1
ECM1ENSG00000143369.101676.74150883.759100.9238011.208008.33960K562LARP7
ECM1ENSG00000143369.101137.85350813.800000.483504.394502.39420K562LSM11
ECM1ENSG00000143369.101730.313901085.115100.673102.576201.55200K562MAK16
ECM1ENSG00000143369.101567.119301004.817700.641108.848807.21390K562METAP2
ECM1ENSG00000143369.102946.857302123.986000.472305.534403.93980K562MSI2
ECM1ENSG00000143369.10706.561201541.76620-1.1257036.7306034.40430K562MTPAP
ECM1ENSG00000143369.101658.93880890.126600.898109.372707.36620K562NAA15
ECM1ENSG00000143369.101269.01300656.960700.9497018.0880015.22750K562NCBP2
ECM1ENSG00000143369.102656.190001381.029100.943508.357706.21850K562PABPC1
ECM1ENSG00000143369.10588.547402067.85710-1.8129044.9729042.07450K562PCBP3
ECM1ENSG00000143369.101209.87920891.140900.441003.993302.23060K562PHF6
ECM1ENSG00000143369.101543.090301157.600900.414603.264201.55890K562PKM
ECM1ENSG00000143369.101488.344502047.52050-0.460205.862703.87740K562PNPT1
ECM1ENSG00000143369.10455.063901586.09920-1.8013059.9625057.01070K562POLR2G
ECM1ENSG00000143369.10889.28420671.534600.405102.608101.87930K562PRPF8
ECM1ENSG00000143369.101658.83030818.414501.0192019.6436016.80150K562PSIP1
ECM1ENSG00000143369.101923.40940752.264901.3543014.6477013.18250K562PTBP1
ECM1ENSG00000143369.101749.107202174.15020-0.313802.851702.02350K562PUF60
ECM1ENSG00000143369.103794.115201059.402301.840409.743808.77320K562PUS1
ECM1ENSG00000143369.101771.689201032.152200.7794016.2918014.83820K562RBM15
ECM1ENSG00000143369.10817.149801505.17380-0.8813015.7479012.34550K562RBM17
ECM1ENSG00000143369.101257.58060721.041500.8024010.500008.70400K562RBM22
ECM1ENSG00000143369.10528.62230361.376900.548603.758402.17470K562RBM25
ECM1ENSG00000143369.101166.31900703.100400.730106.632404.28880K562RBM34
ECM1ENSG00000143369.101518.36140746.615401.0240014.5760012.31150K562RCC2
ECM1ENSG00000143369.10120.55030683.93180-2.5042044.4245041.37330K562RPS19
ECM1ENSG00000143369.10586.311901282.82360-1.129607.143704.52830K562RPS3A
ECM1ENSG00000143369.10231.82090686.50560-1.5663018.5190015.41240K562RRP9
ECM1ENSG00000143369.10907.982701413.30830-0.638308.419506.58170K562SAFB
ECM1ENSG00000143369.101054.372901461.17210-0.470704.005002.23830K562SDAD1
ECM1ENSG00000143369.102735.855201690.334800.6946017.6201015.71150K562SF3A3
ECM1ENSG00000143369.101428.37100978.987800.544904.559003.29330K562SF3B1
ECM1ENSG00000143369.10875.280001127.51930-0.365302.750801.48900K562SLBP
ECM1ENSG00000143369.10755.63080476.784300.664205.092602.71230K562SLTM
ECM1ENSG00000143369.102498.246601345.840600.892308.423105.39650K562SMN1
ECM1ENSG00000143369.101978.975801731.784800.192402.162501.32570K562SRPK2
ECM1ENSG00000143369.10944.11850737.530100.356202.769202.06250K562SRSF1
ECM1ENSG00000143369.10755.80090585.195100.369002.447601.46700K562SRSF4
ECM1ENSG00000143369.10286.20850480.07980-0.746204.637702.92090K562SSB
ECM1ENSG00000143369.101012.193501493.50680-0.561205.105403.22430K562SSRP1
ECM1ENSG00000143369.101102.96280650.008700.762807.610705.86480K562SUPV3L1
ECM1ENSG00000143369.10806.587401590.92330-0.9800021.4568019.28790K562SYNCRIP
ECM1ENSG00000143369.101109.00800746.299900.571305.548904.52890K562TARDBP
ECM1ENSG00000143369.101165.70160592.635100.9759012.222509.03300K562TFIP11
ECM1ENSG00000143369.10882.98330719.924300.294402.001301.31260K562TIA1
ECM1ENSG00000143369.10596.98170787.18780-0.399002.370101.50920K562TIAL1
ECM1ENSG00000143369.10955.49280706.764600.434902.359801.36790K562TRA2A
ECM1ENSG00000143369.103380.332901642.426601.0412046.9966043.20280K562TROVE2
ECM1ENSG00000143369.10662.65710369.291300.843406.834304.96060K562U2AF1
ECM1ENSG00000143369.10556.06480381.546000.543304.405003.39630K562U2AF2
ECM1ENSG00000143369.103797.422702451.279300.6314010.736508.21350K562UBE2L3
ECM1ENSG00000143369.10984.804001554.21160-0.658309.866008.17500K562WDR3
ECM1ENSG00000143369.10437.226701616.20130-1.8862097.5677094.37940K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ECM1 is not available on ENCORE database.





11 RBPs can affect the splicing of ECM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEECM1ENSG00000143369.10chr1+150482577150482658150482136150482238150483351150483585-0.226000.001630.05354excludedK562PRPF8
SEECM1ENSG00000143369.10chr1+150482417150482478150482136150482238150482577150482658-0.074000.001810.02015excludedK562AQR
SEECM1ENSG00000143369.10chr1+150483932150484307150483351150483674150484827150485048-0.066000.004050.05296excludedK562PUS1
SEECM1ENSG00000143369.10chr1+150482397150482478150482136150482238150482577150482658-0.093000.001190.05788excludedK562EFTUD2
SEECM1ENSG00000143369.10chr1+150484112150484307150483351150483674150484827150485048-0.106000.000480.03944excludedK562HNRNPUL1
A3SSECM1ENSG00000143369.10chr1+1504819351504820571504820061504820571504805511504807550.083000.000010.00010longerK562AQR
A5SSECM1ENSG00000143369.10chr1+150482136150482478150482136150482238150482577150482773-0.052000.003330.05164shorterK562AQR
RIECM1ENSG00000143369.10chr1+150482136150482478150482136150482238150482397150482478-0.076000.001590.06935excludedK562NCBP2
RIECM1ENSG00000143369.10chr1+150482136150482478150482136150482238150482397150482478-0.111000.000010.01414excludedK562EWSR1
RIECM1ENSG00000143369.10chr1+1504824381504826281504824381504824781504825771504826280.079000.000040.00098includedK562PRPF8
RIECM1ENSG00000143369.10chr1+1504821361504824781504821361504822381504823971504824780.259000.000020.00057includedK562PRPF8
RIECM1ENSG00000143369.10chr1+1504824381504826281504824381504824781504825771504826280.104000.000000.00002includedK562EFTUD2
RIECM1ENSG00000143369.10chr1+1504821361504824781504821361504822381504823971504824780.209000.000000.00002includedK562EFTUD2
RIECM1ENSG00000143369.10chr1+150482136150482478150482136150482238150482397150482478-0.086000.000010.00186excludedK562FMR1
RIECM1ENSG00000143369.10chr1+150482136150482478150482136150482238150482397150482478-0.074000.000600.05555excludedK562METAP2
RIECM1ENSG00000143369.10chr1+1504821361504824781504821361504822381504823971504824780.173000.000000.00004includedK562AQR
RIECM1ENSG00000143369.10chr1+150482136150482478150482136150482238150482397150482478-0.059000.000970.02116excludedK562PTBP1
MXEECM1ENSG00000143369.10chr1+1504821361504822381504823971504824781504820061504820571504825771504826580.118000.000020.002211includedK562SBDS
MXEECM1ENSG00000143369.10chr1+1504821361504822381504825771504826581504820061504820571504833511504836740.223000.000710.018061includedK562PRPF8
MXEECM1ENSG00000143369.10chr1+1504821361504822381504823101504824781504820061504820571504825771504826580.174000.005010.074581includedK562PRPF8
MXEECM1ENSG00000143369.10chr1+1504821361504822381504823971504824781504820061504820571504825771504826580.172000.003990.064281includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ECM1 is not avaliable on ENCORE database.