ECH1

General Information

Gene Name       : ECH1
Gene ID             : ENSG00000104823.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ECH1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ECH1ENSG00000104823.892.86145.33119.09ENCSR000AEF
HepG2ECH1ENSG00000104823.8210.03175.70192.87ENCSR985KAT
K562ECH1ENSG00000104823.895.8689.6892.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ECH1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ECH1 RNA is bound by 23 proteins.  







eCLIP assay for ECH1 is not avaliable on ENCORE database.





23 proteins are bound to ECH1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193930812639308163-3'-UTR,CDS,intron-Distal4.601728.82884K562RPS3
chr193930799939308004-3'-UTR,CDS,intron-Distal,intron-Proximal3.407428.68789K562YBX3
chr193930795539308005-3'-UTR,CDS,intron-Distal,intron-Proximal3.5078010.60467HepG2RPS3
chr193930770439307726-3'-UTR,CDS,intron-Distal,intron-Proximal4.562224.61933HepG2LARP4
chr193930709539307150-3'-UTR,CDS,intron-Distal,intron-Proximal4.1246117.01510HepG2RPS3
chr193930608039306172-3'-UTR,intron-Distal,intron-Proximal5.7174310.27311K562PABPC4
chr193930810439308205-3'-UTR,CDS,intron-Distal,intron-Proximal3.5616611.84808HepG2G3BP1
chr193930816339308205-3'-UTR,CDS,intron-Distal6.4474911.86963K562RPS3
chr193930710739307164-3'-UTR,CDS,intron-Distal,intron-Proximal4.4759511.68674K562RPS3
chr193930613739306165-3'-UTR,intron-Distal3.670985.27876K562IGF2BP1
chr193930608539306174-3'-UTR,intron-Distal,intron-Proximal5.3978117.62510HepG2SUB1
chr193930809239308101-3'-UTR,CDS,intron-Distal,intron-Proximal3.162968.24506K562YBX3
chr193930799139307999-3'-UTR,CDS,intron-Distal,intron-Proximal3.514129.86022K562YBX3
chr193930619739306280-3'-UTR,CDS,intron-Distal3.6411811.27846HepG2LARP4
chr193930608439306178-3'-UTR,intron-Distal,intron-Proximal4.2327416.34075HepG2LARP4
chr193930808939308176-3'-UTR,CDS,intron-Distal,intron-Proximal3.7973014.00803HepG2RPS3
chr193930715739307164-3'-UTR,CDS,intron-Distal,intron-Proximal3.275113.95458HepG2RPS3
chr193930606739306137-3'-UTR,intron-Distal,intron-Proximal3.9025911.83559K562IGF2BP1
chr193930772139307770-3'-UTR,CDS,intron-Distal,intron-Proximal3.560268.40553HepG2RPS3
chr193932200839322068-5'-UTR,CDS,intron-Distal,intron-Proximal3.461847.28733HepG2RPS3
chr193932196239322008-5'-UTR,CDS,intron-Distal,intron-Proximal5.4508810.75826HepG2G3BP1
chr193932173639321797-5'-UTR,CDS,intron-Distal,intron-Proximal4.298839.03593K562LIN28B
chr193932172139321786-5'-UTR,CDS,intron-Distal,intron-Proximal4.7111411.76140HepG2G3BP1
chr193932185739321959-5'-UTR,CDS,intron-Distal,intron-Proximal5.300008.88638HepG2AQR
chr193932174239321780-5'-UTR,CDS,intron-Distal,intron-Proximal3.209688.18086HepG2GRWD1
chr193932172439321790-5'-UTR,CDS,intron-Distal,intron-Proximal3.035696.00978HepG2PPIG
chr193932208939322127-5'-UTR,CDS,intron-Distal,intron-Proximal4.1046015.93286K562YBX3
chr193932194839321962-5'-UTR,CDS,intron-Distal,intron-Proximal3.630114.72530HepG2G3BP1
chr193930693039306940-CDS,intron-Distal,intron-Proximal6.4099319.61332K562LIN28B
chr193930654939306592-CDS,intron-Distal8.32297158.98021K562LIN28B
chr193930650339306523-CDS,intron-Distal5.110034.90304HepG2RPS3
chr193930655839306605-CDS,intron-Distal3.384906.54112HepG2G3BP1
chr193930653839306591-CDS,intron-Distal6.1251136.25131HepG2LIN28B
chr193930690539306925-CDS,intron-Distal,intron-Proximal6.1720614.27141K562AQR
chr193930663339306647-CDS,intron-Distal4.4896914.16974K562LIN28B
chr193930659139306623-CDS,intron-Distal5.3979823.31736HepG2LIN28B
chr193930660639306630-CDS,intron-Distal5.4608220.19655K562LIN28B
chr193930659239306606-CDS,intron-Distal7.82656110.45281K562LIN28B
chr193930652339306549-CDS,intron-Distal5.6172024.54154K562LIN28B
chr193930694039306959-CDS,intron-Distal,intron-Proximal4.9605712.69637K562LIN28B
chr193930692339306930-CDS,intron-Distal,intron-Proximal6.2025716.41069K562LIN28B
chr193930655539306626-CDS,intron-Distal5.4025111.72285HepG2RPS3
chr193930692339306983-CDS,intron-Distal,intron-Proximal3.380749.50663HepG2RPS3
chr193930663639306647-CDS,intron-Distal3.015704.55847HepG2G3BP1
chr193930644939306516-CDS,intron-Distal,intron-Proximal5.5312810.62525HepG2PRPF8
chr193930692439306954-CDS,intron-Distal,intron-Proximal3.321425.74594HepG2G3BP1
chr193930789139307941-CDS,intron-Distal,intron-Proximal3.835783.01266HepG2SF3B4
chr193930688539306911-intron-Distal,intron-Proximal4.028435.90528HepG2AQR
chr193931764639317734-intron-Distal4.285583.34627K562HNRNPK
chr193930687739306905-intron-Distal,intron-Proximal6.1934013.72936K562AQR
chr193930732839307400-intron-Distal3.585896.39220HepG2RBFOX2
chr193931765539317763-intron-Distal3.139304.42079K562PCBP1
chr193930762439307673-intron-Distal,intron-Proximal5.530594.52669HepG2EFTUD2
chr193930743439307526-intron-Distal,intron-Proximal3.845825.03283HepG2RBFOX2
chr193930691139306924-intron-Distal,intron-Proximal3.276764.80460HepG2AQR
chr193931763939317784-intron-Distal6.3335323.85933HepG2HNRNPK
chr193931765239317788-intron-Distal3.575744.86139HepG2CSTF2T
chr193931221239312301-intron-Distal3.788284.48459HepG2XPO5
chr193931763139317720-intron-Distal4.043899.60062K562ILF3
chr193930762139307694-intron-Distal,intron-Proximal4.603134.22101K562PRPF8
chr193931765439317773-intron-Distal6.135628.74867HepG2PCBP1
chr193932192439321945-intron-Distal,intron-Proximal3.823764.16174HepG2PRPF8
chr193931764939317777-intron-Distal7.7645790.94258HepG2PCBP2
chr193930734239307469-intron-Distal3.613965.61462HepG2PRPF4
chr193930762139307685-intron-Distal,intron-Proximal4.812115.17615K562AQR
chr193931764039317771-intron-Distal5.4215132.27683HepG2DDX59
chr193931763539317736-intron-Distal3.9730811.73205HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ECH1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ECH1 is not available on ENCORE database.

  • 120 RBPs can affect the levels of ECH1.  








The Knockdown/knockout RNA-Seq assay for ECH1 is not available on ENCORE database.





120 RBPs can affect the gene expression of ECH1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ECH1ENSG00000104823.4964.850701723.86480-0.837308.607306.83900HepG2AATF
ECH1ENSG00000104823.41499.843302911.04690-0.9567027.2137025.76580HepG2ACO1
ECH1ENSG00000104823.4715.651701499.11270-1.0668011.368509.52870HepG2ADAR
ECH1ENSG00000104823.42550.856405716.22880-1.1641011.5566010.54260HepG2AKAP1
ECH1ENSG00000104823.43026.972004729.36040-0.643805.060204.01290HepG2ASCC1
ECH1ENSG00000104823.42809.232403299.61470-0.232102.922602.22020HepG2AUH
ECH1ENSG00000104823.43559.346804493.32740-0.336201.999501.33490HepG2CIRBP
ECH1ENSG00000104823.42320.540002910.01020-0.326605.458804.58460HepG2CKAP4
ECH1ENSG00000104823.42907.429101421.850101.0319020.9510019.28140HepG2CPSF6
ECH1ENSG00000104823.42127.503902688.56060-0.337703.297702.60850HepG2CELF1
ECH1ENSG00000104823.44074.466802890.817600.4950016.6994015.14380HepG2DAZAP1
ECH1ENSG00000104823.42253.981601900.323400.246101.875601.30520HepG2DDX21
ECH1ENSG00000104823.43565.168705474.98690-0.618904.813004.00580HepG2DDX3X
ECH1ENSG00000104823.42522.792501861.188000.438704.619702.97230HepG2DDX47
ECH1ENSG00000104823.43447.304202464.439200.484105.515504.13500HepG2DDX5
ECH1ENSG00000104823.42752.943004704.84100-0.773205.785904.92180HepG2DDX6
ECH1ENSG00000104823.42541.212801455.897700.8035014.6831012.70180HepG2DHX30
ECH1ENSG00000104823.43374.355602784.978600.276804.198303.39830HepG2DKC1
ECH1ENSG00000104823.42352.502601509.425300.640106.050605.04250HepG2DNAJC21
ECH1ENSG00000104823.41850.429101496.344800.306302.819102.16200HepG2DNAJC2
ECH1ENSG00000104823.41758.626102495.41160-0.504802.761701.59500HepG2EIF2S2
ECH1ENSG00000104823.41205.393001810.25770-0.586705.822904.54570HepG2EIF3D
ECH1ENSG00000104823.41889.694602852.00790-0.5938014.7841013.15320HepG2EIF4G1
ECH1ENSG00000104823.44189.134002732.034100.616608.898407.47190HepG2EIF4G2
ECH1ENSG00000104823.43034.636503788.41460-0.320105.711004.89910HepG2ETF1
ECH1ENSG00000104823.41639.425603322.96620-1.019305.299904.26340HepG2FIP1L1
ECH1ENSG00000104823.42219.018501424.365900.639502.522001.55470HepG2FTO
ECH1ENSG00000104823.42988.296803974.88640-0.411605.248604.17620HepG2FUBP3
ECH1ENSG00000104823.42785.337605042.85000-0.856407.481006.38410HepG2FXR1
ECH1ENSG00000104823.41170.873401611.73760-0.461004.354703.22100HepG2GEMIN5
ECH1ENSG00000104823.42980.373301611.674100.8868012.7180011.44000HepG2GPKOW
ECH1ENSG00000104823.42278.346702778.97140-0.286603.294702.23460HepG2HDGF
ECH1ENSG00000104823.41119.035502119.04900-0.921202.807701.42770HepG2HLTF
ECH1ENSG00000104823.42703.452101695.126900.673307.625106.52060HepG2HNRNPC
ECH1ENSG00000104823.42422.115501550.003100.6439015.9362014.40310HepG2HNRNPF
ECH1ENSG00000104823.42878.520504738.61320-0.719105.502204.54230HepG2HNRNPK
ECH1ENSG00000104823.44863.779101538.059701.6609045.7188043.66960HepG2HNRNPLL
ECH1ENSG00000104823.41690.031302291.75540-0.439402.336701.46180HepG2HNRNPM
ECH1ENSG00000104823.42977.487801526.300900.9640025.0509023.14110HepG2IGF2BP1
ECH1ENSG00000104823.42896.560304753.26980-0.714606.246505.26970HepG2IGF2BP2
ECH1ENSG00000104823.42568.021804462.61540-0.797203.049902.01520HepG2IGF2BP3
ECH1ENSG00000104823.43696.599604781.84860-0.371402.314501.40960HepG2KHSRP
ECH1ENSG00000104823.43101.225302660.810600.220903.602802.43860HepG2KIF1C
ECH1ENSG00000104823.41400.742401800.03600-0.361803.497002.22190HepG2LARP7
ECH1ENSG00000104823.43350.743505044.62160-0.590304.239203.43020HepG2MAGOH
ECH1ENSG00000104823.43092.862405072.45080-0.713705.545704.67760HepG2MATR3
ECH1ENSG00000104823.4933.715901894.44750-1.020707.027205.43130HepG2METAP2
ECH1ENSG00000104823.41493.541302687.88500-0.847705.643404.52430HepG2MSI2
ECH1ENSG00000104823.43025.393105191.60610-0.779106.363605.41900HepG2NCBP2
ECH1ENSG00000104823.42257.250901363.859400.7268010.706509.31270HepG2NSUN2
ECH1ENSG00000104823.43510.257604624.50890-0.397709.011208.01810HepG2PCBP1
ECH1ENSG00000104823.42398.275202087.452100.200202.171001.47880HepG2PRPF4
ECH1ENSG00000104823.42710.984504705.61880-0.7956031.8544030.40430HepG2PTBP1
ECH1ENSG00000104823.44531.626402736.367300.7277014.5210013.30020HepG2PUF60
ECH1ENSG00000104823.42133.025302904.78920-0.4455010.470009.47300HepG2PUM1
ECH1ENSG00000104823.42447.709802902.65840-0.245902.371301.74980HepG2PUM2
ECH1ENSG00000104823.43857.503902965.031000.379508.863007.86460HepG2PUS1
ECH1ENSG00000104823.42003.027205096.28410-1.3473062.5034060.30320HepG2QKI
ECH1ENSG00000104823.4473.415802014.58730-2.089309.160507.92800HepG2RAVER1
ECH1ENSG00000104823.42052.064403313.77620-0.6914014.8514013.11450HepG2RBM15
ECH1ENSG00000104823.41495.460903166.41040-1.0823039.5029037.99090HepG2RBM22
ECH1ENSG00000104823.42749.848604625.21190-0.7502016.4365014.87550HepG2RBM25
ECH1ENSG00000104823.42706.116605236.89520-0.9525045.3299043.74360HepG2NELFE
ECH1ENSG00000104823.42708.710804877.46840-0.8485037.0023035.24280HepG2RECQL
ECH1ENSG00000104823.42609.296001669.878700.643804.691003.83250HepG2RPLP0
ECH1ENSG00000104823.41094.207601761.67500-0.687106.761905.84840HepG2RPS19
ECH1ENSG00000104823.42503.981301394.948900.843907.787406.46390HepG2RPS3A
ECH1ENSG00000104823.4745.156001187.78250-0.672704.864903.85530HepG2RRP9
ECH1ENSG00000104823.42058.448501499.551000.456906.525405.59850HepG2SAFB2
ECH1ENSG00000104823.42731.323403788.07170-0.471902.988402.28640HepG2SF3A3
ECH1ENSG00000104823.42881.289704899.14210-0.7658030.3107028.72120HepG2SF3B4
ECH1ENSG00000104823.44082.774902623.779400.6378026.3794024.63970HepG2SLBP
ECH1ENSG00000104823.41831.853803576.33830-0.9652047.3348045.92920HepG2SRFBP1
ECH1ENSG00000104823.42297.366105113.64960-1.1544071.4466069.79240HepG2SRSF1
ECH1ENSG00000104823.41924.947902701.78150-0.4891010.515709.40040HepG2SRSF5
ECH1ENSG00000104823.42394.170501522.860500.6526016.3789014.92990HepG2SRSF7
ECH1ENSG00000104823.41878.756004160.23140-1.1469065.1177063.17780HepG2SRSF9
ECH1ENSG00000104823.46109.285703105.098500.9763054.3692052.80660HepG2SSB
ECH1ENSG00000104823.42602.594903072.65510-0.239503.766603.06070HepG2SUCLG1
ECH1ENSG00000104823.42271.863301550.279600.551202.453501.81140HepG2SUPV3L1
ECH1ENSG00000104823.42169.911304596.36410-1.0829044.7851042.88010HepG2TAF15
ECH1ENSG00000104823.42453.050401499.406900.7101010.512809.23360HepG2TARDBP
ECH1ENSG00000104823.42770.602604223.41500-0.6082011.7167010.02790HepG2TIA1
ECH1ENSG00000104823.42766.256801635.927600.7577017.2683016.21370HepG2TIAL1
ECH1ENSG00000104823.42693.288301650.883500.706006.725005.91320HepG2TRIM56
ECH1ENSG00000104823.43285.560502673.338600.297402.620801.77170HepG2TUFM
ECH1ENSG00000104823.41118.890702036.08650-0.863702.364301.46130HepG2U2AF2
ECH1ENSG00000104823.4665.39010915.66240-0.460602.699801.95000HepG2UCHL5
ECH1ENSG00000104823.42068.299401419.059000.543402.587001.61830HepG2UPF2
ECH1ENSG00000104823.42566.417903453.00090-0.428108.209206.51320HepG2UTP18
ECH1ENSG00000104823.42022.036303243.40480-0.6817022.3342020.87610HepG2UTP3
ECH1ENSG00000104823.42202.005901249.536400.817305.813904.22610HepG2XPO5
ECH1ENSG00000104823.4971.051101982.73390-1.029903.663502.19010HepG2XRCC5
ECH1ENSG00000104823.42636.764001526.086200.788809.526508.20010HepG2XRN2
ECH1ENSG00000104823.42770.880802059.990000.4276010.533909.36370HepG2ZC3H8
ECH1ENSG00000104823.42716.646803694.73980-0.4436013.8561012.86630HepG2ZNF622
ECH1ENSG00000104823.4840.309501382.74140-0.718503.908902.47780K562AARS
ECH1ENSG00000104823.43540.127902033.683200.7996020.2214018.80410K562AGGF1
ECH1ENSG00000104823.43438.205702234.840400.6214010.070207.89730K562AKAP8
ECH1ENSG00000104823.43846.017402116.171500.8618018.4401016.45730K562AKAP8L
ECH1ENSG00000104823.42775.819802220.433800.322004.019102.89950K562ATP5C1
ECH1ENSG00000104823.41123.72480898.559100.322503.129301.99850K562CSTF2
ECH1ENSG00000104823.42156.926101678.260400.361905.042303.36870K562DDX21
ECH1ENSG00000104823.41760.958601464.049700.266302.285401.34270K562DDX3X
ECH1ENSG00000104823.41545.197201851.85790-0.261203.112602.42690K562DDX47
ECH1ENSG00000104823.41902.854301484.375400.358204.095602.41350K562DDX6
ECH1ENSG00000104823.42716.162202276.951600.254403.275702.31300K562DKC1
ECH1ENSG00000104823.41620.393101351.768900.261402.138501.49200K562EIF2S2
ECH1ENSG00000104823.4666.041801085.09050-0.704102.692501.70500K562EIF3A
ECH1ENSG00000104823.41846.375501503.307500.296502.590001.36750K562EXOSC5
ECH1ENSG00000104823.41452.45790997.898500.541405.975004.69460K562FIP1L1
ECH1ENSG00000104823.4774.491101590.73300-1.0384028.4216026.61210K562FXR1
ECH1ENSG00000104823.4222.87160710.79580-1.673208.756507.35120K562G3BP2
ECH1ENSG00000104823.41384.630601108.897400.320302.486601.73040K562GPKOW
ECH1ENSG00000104823.42609.168701801.170000.534607.100805.88060K562GRSF1
ECH1ENSG00000104823.42600.067401583.511400.715303.370601.98000K562HNRNPA2B1
ECH1ENSG00000104823.42256.814701673.551600.431305.082603.60040K562HNRNPL
ECH1ENSG00000104823.41802.240101352.867600.413703.779802.85390K562HSPD1
ECH1ENSG00000104823.41473.907001107.270700.412503.155101.86040K562IGF2BP3
ECH1ENSG00000104823.43201.326102245.674800.511408.345806.71130K562KIF1C
ECH1ENSG00000104823.4905.829001143.81870-0.336502.481001.68190K562MAGOH
ECH1ENSG00000104823.43050.975802149.754300.505006.996804.97450K562MAK16
ECH1ENSG00000104823.43286.508802515.738700.385503.830302.73170K562MBNL1
ECH1ENSG00000104823.42552.779401763.360500.533604.275803.10770K562NAA15
ECH1ENSG00000104823.42141.693801654.781600.372008.147306.96340K562NSUN2
ECH1ENSG00000104823.43201.300401384.762901.208908.864306.73700K562PABPN1
ECH1ENSG00000104823.4727.948901017.62920-0.483304.305103.08000K562PCBP2
ECH1ENSG00000104823.41722.404501132.885000.604307.290505.83340K562PPIG
ECH1ENSG00000104823.43082.339201645.974200.905004.612602.56310K562PPP1R8
ECH1ENSG00000104823.4781.103401111.32680-0.508705.764704.83410K562PTBP1
ECH1ENSG00000104823.42006.882002708.27380-0.432403.473202.56210K562PUF60
ECH1ENSG00000104823.43336.366202098.433000.668905.703104.95740K562PUS1
ECH1ENSG00000104823.43081.390102044.796200.5915010.111509.00230K562RBM15
ECH1ENSG00000104823.41889.609101632.907600.210502.003101.30210K562SF3A3
ECH1ENSG00000104823.4430.68590606.89330-0.494803.843001.88180K562SND1
ECH1ENSG00000104823.41533.142401029.104200.575006.579004.84980K562SRSF5
ECH1ENSG00000104823.41861.519701497.674000.313703.815302.42730K562SRSF7
ECH1ENSG00000104823.4891.222701471.18800-0.723107.310005.96020K562SYNCRIP
ECH1ENSG00000104823.41586.737001102.554900.525102.056101.43970K562TARDBP
ECH1ENSG00000104823.41561.106201063.568700.553604.103703.07860K562TIA1
ECH1ENSG00000104823.41657.124601303.951400.345702.332501.47850K562TIAL1
ECH1ENSG00000104823.41492.254001043.947500.515305.422703.77460K562TRA2A
ECH1ENSG00000104823.41984.554701385.951900.517803.685002.56300K562TRIM56
ECH1ENSG00000104823.4356.74930710.97070-0.994905.323704.21420K562U2AF2
ECH1ENSG00000104823.41898.720801501.353300.338703.285802.33520K562WDR3
ECH1ENSG00000104823.42632.064701971.046400.417102.475801.66730K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ECH1 is not available on ENCORE database.





2 RBPs can affect the splicing of ECH1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEECH1ENSG00000104823.4chr19-3930809039308215393217173932180639307955393080043932194839322156-0.110000.002080.054922includedK562XRN2
MXEECH1ENSG00000104823.4chr19-39306496393066473930680839306995393060613930635739307092393071630.088000.000350.031651includedHepG2NOL12

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ECH1 is not avaliable on ENCORE database.