CIDEB

General Information

Gene Name       : CIDEB
Gene ID             : ENSG00000136305.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CIDEB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CIDEBENSG00000136305.113.573.523.54ENCSR000AEF
HepG2CIDEBENSG00000136305.1145.6140.3943.00ENCSR985KAT
K562CIDEBENSG00000136305.110.100.050.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CIDEB is not avaliable on ENCORE database.



Proteins bound to RNA
  • CIDEB RNA is bound by 9 proteins.  







eCLIP assay for CIDEB is not avaliable on ENCORE database.





9 proteins are bound to CIDEB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr142477455824774633-3'-UTR,intron-Distal4.607666.63452HepG2PCBP1
chr142477456724774663-3'-UTR,intron-Distal3.128678.44001HepG2LARP4
chr142477468024774755-3'-UTR,intron-Distal,intron-Proximal3.541928.42668HepG2PCBP2
chr142477440824774493-3'-UTR,intron-Distal3.952556.60828HepG2QKI
chr142477464524774725-3'-UTR,intron-Distal,intron-Proximal3.586123.64078HepG2PCBP1
chr142477444724774547-3'-UTR,intron-Distal3.071076.67252HepG2LARP4
chr142477447324774558-3'-UTR,intron-Distal5.4154916.83071HepG2PCBP2
chr142477477824774828-3'-UTR,intron-Distal,intron-Proximal3.898845.76765HepG2LARP4
chr142477455824774614-3'-UTR,intron-Distal3.490335.65378HepG2PCBP2
chr142477475124774826-3'-UTR,intron-Distal,intron-Proximal3.036553.61537HepG2G3BP1
chr142477467224774751-3'-UTR,intron-Distal,intron-Proximal4.200877.46569HepG2LARP4
chr142477485024774958-3'-UTR,CDS,intron-Distal4.603065.79199HepG2SND1
chr142477461424774680-3'-UTR,intron-Distal4.0009012.55865HepG2PCBP2
chr142477658224776680-CDS,intron-Distal5.818849.12484HepG2RPS3
chr142477557624775658-CDS,intron-Distal,intron-Proximal3.100116.11586HepG2G3BP1
chr142477566624775769-CDS,intron-Distal,intron-Proximal3.539794.80460HepG2AQR
chr142477649124776585-CDS,intron-Distal,intron-Proximal5.334296.92731HepG2PRPF8
chr142477565824775705-CDS,intron-Distal,intron-Proximal3.337633.77614HepG2G3BP1
chr142477652424776585-CDS,intron-Distal,intron-Proximal3.107523.83179HepG2AQR
chr142477557724775694-CDS,intron-Distal,intron-Proximal3.527135.62335HepG2RPS3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CIDEB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CIDEB is not available on ENCORE database.

  • 165 RBPs can affect the levels of CIDEB.  








The Knockdown/knockout RNA-Seq assay for CIDEB is not available on ENCORE database.





165 RBPs can affect the gene expression of CIDEB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CIDEBENSG00000136305.7564.82060924.78660-0.711305.078802.83980HepG2AARS
CIDEBENSG00000136305.7617.317701183.94980-0.9395014.0816011.94790HepG2AATF
CIDEBENSG00000136305.74906.238102487.487000.9798014.1046012.25730HepG2ABCF1
CIDEBENSG00000136305.7298.841101167.36330-1.9658022.5469021.18740HepG2ACO1
CIDEBENSG00000136305.72286.66280923.893701.3073029.4186026.83840HepG2ADAR
CIDEBENSG00000136305.7112.608404032.00490-5.16210231.45830228.11060HepG2AKAP1
CIDEBENSG00000136305.72047.148501172.607100.803809.030807.74450HepG2AKAP8L
CIDEBENSG00000136305.71606.67860962.003500.739903.245901.43970HepG2APOBEC3C
CIDEBENSG00000136305.74146.181103336.108500.313502.387801.65420HepG2ASCC1
CIDEBENSG00000136305.73185.217902244.065000.505206.599604.53490HepG2ATP5C1
CIDEBENSG00000136305.71375.44440943.533400.543704.010702.88390HepG2BCCIP
CIDEBENSG00000136305.72312.66050819.833201.4961030.7358028.29600HepG2BCLAF1
CIDEBENSG00000136305.73620.067201404.094001.3663039.7992038.02020HepG2BOP1
CIDEBENSG00000136305.72890.682801863.319500.633409.682707.53490HepG2BUD13
CIDEBENSG00000136305.73377.486901682.240701.0055023.5110021.68710HepG2CALR
CIDEBENSG00000136305.72476.878901649.256400.586603.570202.44810HepG2CCAR1
CIDEBENSG00000136305.77928.727303169.544701.3227035.1647032.89290HepG2CIRBP
CIDEBENSG00000136305.71476.506501166.820000.339502.690302.03230HepG2CKAP4
CIDEBENSG00000136305.7705.613601030.10230-0.545802.930502.14200HepG2CNOT7
CIDEBENSG00000136305.72877.227901289.020901.1583011.6153010.31420HepG2CPSF6
CIDEBENSG00000136305.72544.944702048.044200.313302.764501.66130HepG2CPSF7
CIDEBENSG00000136305.71764.34030947.457300.896905.323603.91290HepG2YBX3
CIDEBENSG00000136305.71070.77260582.780400.8775011.473209.53910HepG2CSTF2
CIDEBENSG00000136305.7880.928401352.36120-0.6184010.401809.31010HepG2CELF1
CIDEBENSG00000136305.72045.242801453.948400.4922012.3551010.96830HepG2DAZAP1
CIDEBENSG00000136305.71348.115501079.510700.320502.158901.41510HepG2DDX19B
CIDEBENSG00000136305.71505.50730948.748500.6661012.103509.94940HepG2DDX1
CIDEBENSG00000136305.72769.116201305.156201.0851025.5603023.79680HepG2DDX21
CIDEBENSG00000136305.72810.810501278.107201.1369032.5065029.84890HepG2DDX24
CIDEBENSG00000136305.71878.50230867.989001.1137013.7244011.20570HepG2DDX27
CIDEBENSG00000136305.7987.08100702.734100.490103.617502.02120HepG2DDX28
CIDEBENSG00000136305.74025.874102027.132800.9898013.9697011.46920HepG2DDX47
CIDEBENSG00000136305.7884.804601112.75360-0.330702.624701.30490HepG2DDX52
CIDEBENSG00000136305.74564.453601963.904801.2166030.3809027.75070HepG2DDX5
CIDEBENSG00000136305.7802.817503317.96200-2.0472053.6768051.48780HepG2DDX6
CIDEBENSG00000136305.74189.46260897.277402.22300101.7356098.07660HepG2DHX30
CIDEBENSG00000136305.73302.221401116.775501.5640091.5848089.23500HepG2DKC1
CIDEBENSG00000136305.72494.30410930.288501.4228046.3967044.01630HepG2DNAJC21
CIDEBENSG00000136305.71191.04890922.137000.369105.317404.45720HepG2DNAJC2
CIDEBENSG00000136305.73982.904301327.609601.5849046.1961043.53410HepG2EEF2
CIDEBENSG00000136305.72342.817403189.45200-0.445104.081503.37070HepG2EIF2S1
CIDEBENSG00000136305.7769.949201077.69880-0.485103.687802.65220HepG2EIF3D
CIDEBENSG00000136305.71930.882301233.117300.6469010.730108.88880HepG2EIF3G
CIDEBENSG00000136305.72939.274604196.15750-0.513604.341702.07450HepG2EIF3H
CIDEBENSG00000136305.74530.728603524.629700.362202.607301.98550HepG2EIF4A3
CIDEBENSG00000136305.7884.890803431.89280-1.9554039.7818037.39740HepG2EIF4B
CIDEBENSG00000136305.72164.857001434.557500.5936013.9724012.38170HepG2EIF4G1
CIDEBENSG00000136305.71979.673701374.187600.526606.072804.88680HepG2EIF4G2
CIDEBENSG00000136305.74078.046102154.501400.9204018.1647015.75860HepG2ESF1
CIDEBENSG00000136305.72210.209201514.930300.5448011.2445010.16360HepG2ETF1
CIDEBENSG00000136305.7683.56240963.24330-0.494805.285203.64160HepG2FAM120A
CIDEBENSG00000136305.7932.731702511.66970-1.4291027.4320025.47960HepG2FIP1L1
CIDEBENSG00000136305.71774.42030772.158301.2003019.4714016.75030HepG2FKBP4
CIDEBENSG00000136305.72272.928901291.259300.815703.860702.66000HepG2FTO
CIDEBENSG00000136305.7684.139201549.06730-1.1790013.7947011.57000HepG2FUS
CIDEBENSG00000136305.71381.211103556.47500-1.3645031.8903029.86490HepG2FXR1
CIDEBENSG00000136305.75034.872703502.507900.523506.087804.75620HepG2G3BP2
CIDEBENSG00000136305.71699.40800959.544300.8245011.527309.76970HepG2GEMIN5
CIDEBENSG00000136305.71917.649901076.924700.8323010.806408.76550HepG2GNB2L1
CIDEBENSG00000136305.712069.013801461.167503.0460043.3883041.23650HepG2GPKOW
CIDEBENSG00000136305.7608.21440953.59650-0.648804.245502.87150HepG2GRSF1
CIDEBENSG00000136305.71864.35670999.713700.8990011.033707.92650HepG2GRWD1
CIDEBENSG00000136305.73187.62830939.201601.7629038.5457036.68470HepG2HNRNPA1
CIDEBENSG00000136305.73386.928201044.709201.6968059.1943056.47740HepG2HNRNPC
CIDEBENSG00000136305.71529.07960892.278700.777006.925604.60230HepG2HNRNPD
CIDEBENSG00000136305.73006.689801071.358001.4886035.8387033.76070HepG2HNRNPF
CIDEBENSG00000136305.72076.043103340.87920-0.6864010.427409.14920HepG2HNRNPK
CIDEBENSG00000136305.71575.844701324.383500.250703.372502.63490HepG2HNRNPL
CIDEBENSG00000136305.710678.677901394.422502.93690114.14040111.19220HepG2HNRNPLL
CIDEBENSG00000136305.7986.476201732.68040-0.8126014.9289013.01830HepG2HNRNPM
CIDEBENSG00000136305.71678.542401037.800700.693603.772703.07550HepG2HNRNPU
CIDEBENSG00000136305.72092.895902877.69220-0.459403.348801.99000HepG2HSPD1
CIDEBENSG00000136305.74160.173401054.981501.9793013.6151012.13580HepG2IGF2BP1
CIDEBENSG00000136305.74442.354803353.320100.405603.757302.98060HepG2IGF2BP2
CIDEBENSG00000136305.7862.991903147.15070-1.8666013.9852011.97400HepG2IGF2BP3
CIDEBENSG00000136305.71802.765801060.075400.7659025.8957023.93290HepG2ILF2
CIDEBENSG00000136305.71717.812101004.255700.774306.479804.38520HepG2ILF3
CIDEBENSG00000136305.71367.22640981.657500.477903.243201.92990HepG2KHDRBS1
CIDEBENSG00000136305.71862.580201066.936300.8037014.3032012.21900HepG2KIF1C
CIDEBENSG00000136305.74389.935802875.513600.610305.218703.50290HepG2KRR1
CIDEBENSG00000136305.73927.433201742.914101.1720018.2153016.09630HepG2LARP4
CIDEBENSG00000136305.7547.190201055.11890-0.9473014.3153011.94130HepG2LARP7
CIDEBENSG00000136305.71665.890701107.794000.588506.811304.96230HepG2LIN28B
CIDEBENSG00000136305.75204.449903557.717900.548706.231505.25630HepG2MAGOH
CIDEBENSG00000136305.71923.662103577.58590-0.8951012.6768011.39640HepG2MATR3
CIDEBENSG00000136305.7672.783201127.89170-0.745405.413003.97730HepG2METAP2
CIDEBENSG00000136305.73893.351601422.213101.4528017.2242014.85730HepG2MTPAP
CIDEBENSG00000136305.71098.340601441.74140-0.392503.619902.74790HepG2NOL12
CIDEBENSG00000136305.71966.51020851.933001.2067010.158208.02080HepG2NONO
CIDEBENSG00000136305.74212.940901236.449901.7685062.6970060.09410HepG2NSUN2
CIDEBENSG00000136305.73263.336301454.546301.165704.160701.87470HepG2NUFIP2
CIDEBENSG00000136305.71376.84710805.625000.773104.121502.17920HepG2PA2G4
CIDEBENSG00000136305.72284.52840941.549701.2787012.9225010.96500HepG2PABPC1
CIDEBENSG00000136305.74075.100503260.926500.321502.373001.70010HepG2PABPC4
CIDEBENSG00000136305.7521.294901027.21870-0.978608.932807.55140HepG2PARN
CIDEBENSG00000136305.71425.113403518.47790-1.3039071.2011068.87570HepG2PCBP1
CIDEBENSG00000136305.71577.362001012.293500.639805.257703.00080HepG2PHF6
CIDEBENSG00000136305.71257.52890891.234500.496605.431703.72660HepG2PKM
CIDEBENSG00000136305.73897.785702795.005900.479703.906501.77420HepG2PPIG
CIDEBENSG00000136305.72214.76080925.631601.2585046.2342043.39400HepG2PPIL4
CIDEBENSG00000136305.73711.221801407.659901.3985078.1987075.36280HepG2PRPF4
CIDEBENSG00000136305.7999.76270715.582400.482403.483402.58710HepG2PRPF8
CIDEBENSG00000136305.71250.459903580.17320-1.5176089.1273087.10180HepG2PTBP1
CIDEBENSG00000136305.76057.498301376.316002.13780109.19590106.13740HepG2PUF60
CIDEBENSG00000136305.71027.760901461.07600-0.507508.481707.56230HepG2PUM1
CIDEBENSG00000136305.73375.334601188.992901.5052030.7477029.10210HepG2PUS1
CIDEBENSG00000136305.72468.406803877.43650-0.6515015.4260014.12230HepG2QKI
CIDEBENSG00000136305.7882.814601414.95470-0.680603.943103.10660HepG2RAVER1
CIDEBENSG00000136305.71294.084602363.67040-0.869105.809904.62440HepG2RBM15
CIDEBENSG00000136305.7542.214901266.21600-1.2236019.6077018.48770HepG2RBM22
CIDEBENSG00000136305.7944.031201272.31100-0.430503.502702.37950HepG2RBM27
CIDEBENSG00000136305.7689.51590994.94110-0.529003.171101.52630HepG2RBM47
CIDEBENSG00000136305.71804.771101033.173500.804605.827504.28290HepG2RCC2
CIDEBENSG00000136305.71537.408003984.39700-1.3739061.6794059.92600HepG2NELFE
CIDEBENSG00000136305.71952.178103710.90990-0.9267039.2581037.46570HepG2RECQL
CIDEBENSG00000136305.74020.449901154.118901.8005065.4371063.22250HepG2RPLP0
CIDEBENSG00000136305.73930.131901390.156101.4992022.0611019.67510HepG2RPS10
CIDEBENSG00000136305.71849.729601173.392600.656507.899706.59290HepG2RPS2
CIDEBENSG00000136305.72299.347601034.489501.1522015.0665013.26470HepG2RPS3A
CIDEBENSG00000136305.7922.157301197.79560-0.377302.835401.74650HepG2RPS5
CIDEBENSG00000136305.71637.83670924.195000.8254018.7314017.27500HepG2SAFB2
CIDEBENSG00000136305.7718.43920974.14900-0.439302.614801.34010HepG2SART3
CIDEBENSG00000136305.71889.701501052.465800.8443012.7213010.78040HepG2SERBP1
CIDEBENSG00000136305.72796.840601414.985400.982903.143201.67710HepG2SF1
CIDEBENSG00000136305.72258.002003229.40410-0.516203.858903.05630HepG2SF3A3
CIDEBENSG00000136305.75168.823401380.180801.9049075.5683072.78180HepG2SF3B1
CIDEBENSG00000136305.71264.384103727.43970-1.5598097.8927095.33210HepG2SF3B4
CIDEBENSG00000136305.72344.597701319.787000.8289032.9325031.05300HepG2SLBP
CIDEBENSG00000136305.72919.448201380.774001.080103.614901.78920HepG2SLTM
CIDEBENSG00000136305.7714.863601077.74670-0.5923011.3318010.16800HepG2SMN1
CIDEBENSG00000136305.7780.833201443.42110-0.886408.663106.92170HepG2SMNDC1
CIDEBENSG00000136305.72901.330801264.066601.198504.936603.06080HepG2SNRNP200
CIDEBENSG00000136305.73656.627501535.701001.2515015.8137013.96250HepG2SNRNP70
CIDEBENSG00000136305.7248.474301430.17020-2.52500110.22600108.22180HepG2SRFBP1
CIDEBENSG00000136305.73360.702403890.63300-0.211203.204802.70560HepG2SRSF1
CIDEBENSG00000136305.73542.160601485.141901.2539020.9862018.14920HepG2SRSF3
CIDEBENSG00000136305.73698.970001052.574701.8131050.3337048.17350HepG2SRSF7
CIDEBENSG00000136305.71538.009703165.23110-1.0412049.1407047.38480HepG2SRSF9
CIDEBENSG00000136305.710467.950601241.771503.0754099999.9999999999.99999HepG2SSB
CIDEBENSG00000136305.71339.952902867.34940-1.0975017.3901014.66110HepG2SSRP1
CIDEBENSG00000136305.72987.111101677.244900.832606.755104.93560HepG2STAU1
CIDEBENSG00000136305.7892.205701545.47560-0.7926021.1614019.69700HepG2SUCLG1
CIDEBENSG00000136305.72254.438101695.640300.410804.136002.99790HepG2SUPT6H
CIDEBENSG00000136305.74445.86460923.493902.2672046.2302044.13610HepG2SUPV3L1
CIDEBENSG00000136305.71593.935003497.03310-1.1335044.6817042.77950HepG2TAF15
CIDEBENSG00000136305.75338.163301359.231301.9735017.0831015.54270HepG2TARDBP
CIDEBENSG00000136305.78496.542202816.380801.5929015.0485012.83750HepG2TBRG4
CIDEBENSG00000136305.72027.835003213.31780-0.6641012.8658011.09440HepG2TIA1
CIDEBENSG00000136305.74482.370801008.338502.1522013.6746012.70690HepG2TIAL1
CIDEBENSG00000136305.7819.995601420.97090-0.793206.667904.45340HepG2TRA2A
CIDEBENSG00000136305.71465.507801017.436900.526409.687208.72960HepG2TRIM56
CIDEBENSG00000136305.76008.587202148.331501.4837045.2388042.64790HepG2U2AF1
CIDEBENSG00000136305.74648.919601471.084301.659907.994006.23220HepG2U2AF2
CIDEBENSG00000136305.72303.713101423.396800.694508.163406.69340HepG2UBE2L3
CIDEBENSG00000136305.7195.80140545.52350-1.4783019.5398017.56920HepG2UCHL5
CIDEBENSG00000136305.75204.159802863.979900.8615029.1113027.34390HepG2UPF1
CIDEBENSG00000136305.71897.28270845.588501.1658013.8688011.54710HepG2UPF2
CIDEBENSG00000136305.71816.32660926.601000.9709010.483508.39710HepG2XPO5
CIDEBENSG00000136305.7673.900501391.62540-1.0462010.598008.23640HepG2XRCC5
CIDEBENSG00000136305.7779.885701556.20360-0.9967010.278708.37860HepG2XRCC6
CIDEBENSG00000136305.73629.24970909.079101.9971061.8368058.88160HepG2XRN2
CIDEBENSG00000136305.72207.943901389.154300.6684017.8471016.40150HepG2ZC3H8
CIDEBENSG00000136305.76756.131203149.840701.1008056.4030054.75770HepG2ZNF622
CIDEBENSG00000136305.71.0491017.63420-4.071203.473602.57180K562MTPAP
CIDEBENSG00000136305.72.8266019.60220-2.793902.724701.98320K562NSUN2
CIDEBENSG00000136305.70.5328018.06710-5.083704.023101.59040K562NUFIP2
CIDEBENSG00000136305.72.0957019.32890-3.205202.611301.81840K562SF3A3
CIDEBENSG00000136305.70.9731019.80160-4.346803.835502.75240K562SRPK2
CIDEBENSG00000136305.74.0655020.78400-2.354002.374801.70700K562UPF1
CIDEBENSG00000136305.70.9970018.48660-4.212803.642202.68010K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CIDEB is not available on ENCORE database.





9 RBPs can affect the splicing of CIDEB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECIDEBENSG00000136305.7chr14-247751522477534324774392247749712477557924775729-0.131000.000000.00013excludedHepG2U2AF1
SECIDEBENSG00000136305.7chr14-2477515224775355247743922477497124775579247756670.091000.000030.00157includedHepG2HNRNPK
SECIDEBENSG00000136305.7chr14-247751522477534324774392247749712477557924775729-0.083000.000210.02609excludedHepG2SRSF7
SECIDEBENSG00000136305.7chr14-247751522477534324774392247749712477557924775729-0.076000.000000.00000excludedHepG2SRSF1
SECIDEBENSG00000136305.7chr14-247751522477534324774392247749712477557924775729-0.060000.000100.00733excludedHepG2PCBP1
SECIDEBENSG00000136305.7chr14-247751522477534324774392247749712477557924775729-0.069000.000020.00199excludedHepG2SF3B4
SECIDEBENSG00000136305.7chr14-247751522477535524774392247749712477557924775667-0.163000.002770.08391excludedHepG2HNRNPC
A3SSCIDEBENSG00000136305.7chr14-2477702324777159247770232477712624777684247780360.261000.000040.00167longerHepG2U2AF2
A3SSCIDEBENSG00000136305.7chr14-2477702324777159247770232477712624777684247780360.100000.000000.00000longerHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CIDEB is not avaliable on ENCORE database.