VARS

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VARS	ENSG00000204394.12	58.62	94.09	76.36	ENCSR000AEF
HepG2	VARS	ENSG00000204394.12	83.40	74.81	79.11	ENCSR985KAT
K562	VARS	ENSG00000204394.12	203.99	223.46	213.73	ENCSR000AEO

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
VARS		A304-776A	1				BGHcLV36-55, Submitted, ENCORE2	BGKcLV37-57, Submitted, ENCORE2

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
VARS	K562	CRISPR			VARS-BGKcLV37-57,VARS-BGKcLV37-58	NT-BGKcLV37-1,NT-BGKcLV37-2	57.4,51.1	Submitting	ENCORE2
VARS	HepG2	CRISPR			VARS-BGHcLV36-55,VARS-BGHcLV36-56	NT-BGHcLV36-1,NT-BGHcLV36-2	52.1,51.3	Submitting	ENCORE2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VARS is not avaliable on ENCORE database.

Proteins bound to RNA

VARS RNA is bound by 38 proteins.

eCLIP assay for VARS is not avaliable on ENCORE database.

38 proteins are bound to VARS RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	31750306	31750324	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54728	8.53736	K562	FMR1
chr6	31750382	31750401	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.44114	19.42120	K562	FMR1
chr6	31750359	31750378	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.83907	18.03671	K562	FXR2
chr6	31749911	31749938	-	3'-UTR,CDS,intron-Distal	5.54450	11.29529	K562	FMR1
chr6	31750178	31750220	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.86414	18.33481	K562	FMR1
chr6	31750119	31750178	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.76379	24.99781	K562	FMR1
chr6	31749665	31749699	-	3'-UTR,CDS,intron-Distal	5.15634	5.12780	HepG2	G3BP1
chr6	31750353	31750382	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.21741	17.50119	K562	FMR1
chr6	31750160	31750219	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.99707	28.55281	K562	FXR2
chr6	31750069	31750122	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.09553	10.98900	HepG2	PPIG
chr6	31749907	31749941	-	3'-UTR,CDS,intron-Distal	4.90831	12.19301	K562	FXR2
chr6	31750117	31750178	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.71873	4.12796	K562	LIN28B
chr6	31749631	31749695	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01355	3.98140	K562	LIN28B
chr6	31750075	31750159	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.00727	15.17088	K562	DDX24
chr6	31745328	31745372	-	3'-UTR,intron-Distal	3.64987	7.72939	K562	PABPC4
chr6	31749655	31749726	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.45716	28.45047	K562	RPS3
chr6	31750094	31750210	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.39355	12.62823	HepG2	RPS3
chr6	31749655	31749703	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.07798	17.41116	K562	FMR1
chr6	31750105	31750158	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.77795	8.04296	K562	RPS3
chr6	31749865	31749891	-	3'-UTR,CDS,intron-Distal	4.88069	4.98634	K562	METAP2
chr6	31749663	31749728	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.71496	10.17831	HepG2	RPS3
chr6	31749878	31749912	-	3'-UTR,CDS,intron-Distal	5.70518	10.04389	HepG2	PPIG
chr6	31749645	31749706	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.80800	10.79453	K562	DDX24
chr6	31750191	31750276	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32927	7.11948	HepG2	SF3B4
chr6	31749634	31749681	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.51142	7.87154	HepG2	PPIG
chr6	31749863	31749890	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.04335	16.03242	K562	FMR1
chr6	31750129	31750174	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.08630	6.23779	HepG2	PPIG
chr6	31745338	31745422	-	3'-UTR,CDS,intron-Distal	4.26974	4.60160	HepG2	LARP4
chr6	31750352	31750391	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.80316	4.86632	HepG2	G3BP1
chr6	31749634	31749712	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.13320	4.11060	HepG2	SRSF1
chr6	31749863	31749933	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.22553	3.99014	HepG2	PABPN1
chr6	31749903	31749943	-	3'-UTR,CDS,intron-Distal	5.09244	5.64902	K562	METAP2
chr6	31749703	31749729	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.22393	17.28659	K562	FMR1
chr6	31750378	31750406	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.52804	21.08115	K562	FXR2
chr6	31745336	31745348	-	3'-UTR,intron-Distal	4.81204	8.23960	K562	YBX3
chr6	31750372	31750445	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74555	9.50921	HepG2	PRPF8
chr6	31749863	31749889	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.12859	16.17642	K562	FXR2
chr6	31750363	31750408	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43358	13.70940	K562	METAP2
chr6	31750307	31750316	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.69183	13.00509	K562	FXR2
chr6	31750117	31750160	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.75360	17.02120	K562	FXR2
chr6	31749702	31749729	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.48086	20.85277	K562	FXR2
chr6	31760220	31760291	-	5'-UTR,CDS,intron-Distal	3.71278	10.57094	HepG2	G3BP1
chr6	31760053	31760077	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.40984	7.85262	K562	UCHL5
chr6	31763340	31763429	-	5'-UTR,intron-Distal,intron-Proximal	3.70492	18.45407	HepG2	DDX3X
chr6	31760589	31760617	-	5'-UTR,CDS,intron-Distal	3.08466	4.44431	HepG2	G3BP1
chr6	31759994	31760055	-	5'-UTR,CDS,intron-Distal	4.42358	3.78281	HepG2	FXR2
chr6	31759715	31759742	-	5'-UTR,CDS,intron-Distal	3.19922	4.44630	K562	ZNF622
chr6	31762889	31762996	-	5'-UTR,CDS,intron-Distal	3.85132	19.29905	K562	PCBP1
chr6	31760533	31760543	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.95021	5.31712	K562	METAP2
chr6	31760778	31760822	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.82334	15.80228	K562	FXR2
chr6	31760167	31760217	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.20364	7.90295	K562	METAP2
chr6	31763374	31763423	-	5'-UTR,intron-Distal,intron-Proximal	4.06113	14.11801	K562	FXR2
chr6	31760063	31760078	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.65221	6.29942	HepG2	G3BP1
chr6	31759706	31759743	-	5'-UTR,CDS,intron-Distal	5.37244	15.50924	K562	FXR2
chr6	31763320	31763419	-	5'-UTR,intron-Distal,intron-Proximal	3.35214	12.43053	K562	DDX3X
chr6	31760632	31760671	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.85279	10.91666	K562	FXR2
chr6	31763419	31763501	-	5'-UTR,intron-Distal,intron-Proximal	3.23179	7.03787	K562	DDX3X
chr6	31760167	31760220	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.01711	14.91265	HepG2	G3BP1
chr6	31760167	31760243	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.09481	11.84454	K562	UCHL5
chr6	31763354	31763409	-	5'-UTR,intron-Distal,intron-Proximal	3.87516	11.92340	K562	FMR1
chr6	31759995	31760053	-	5'-UTR,CDS,intron-Distal	3.43813	9.10235	K562	UCHL5
chr6	31760544	31760549	-	5'-UTR,CDS,intron-Distal	3.57508	19.42324	K562	YBX3
chr6	31760549	31760569	-	5'-UTR,CDS,intron-Distal	3.05630	17.10783	K562	YBX3
chr6	31760262	31760292	-	5'-UTR,CDS,intron-Distal	5.23026	6.98580	K562	METAP2
chr6	31760583	31760616	-	5'-UTR,CDS,intron-Distal	3.88929	11.98752	K562	FXR2
chr6	31760640	31760671	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.46324	7.72091	K562	FMR1
chr6	31760283	31760293	-	5'-UTR,CDS,intron-Distal	3.34454	36.86899	K562	YBX3
chr6	31763281	31763327	-	5'-UTR,intron-Distal,intron-Proximal	4.61906	6.23016	HepG2	PRPF8
chr6	31760006	31760100	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.05314	9.24251	HepG2	EFTUD2
chr6	31760580	31760615	-	5'-UTR,CDS,intron-Distal	4.84649	11.30164	K562	FMR1
chr6	31760574	31760628	-	5'-UTR,CDS,intron-Distal	3.16621	4.99353	K562	LIN28B
chr6	31760762	31760805	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.90784	5.96402	HepG2	RPS3
chr6	31760533	31760535	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.28496	34.60975	K562	YBX3
chr6	31763177	31763265	-	5'-UTR,intron-Distal	4.15828	4.07750	HepG2	HNRNPK
chr6	31760535	31760540	-	5'-UTR,CDS,intron-Distal	3.35551	38.48521	K562	YBX3
chr6	31759996	31760023	-	5'-UTR,CDS,intron-Distal	4.54515	5.12780	HepG2	G3BP1
chr6	31759996	31760051	-	5'-UTR,CDS,intron-Distal	3.19631	6.19730	K562	ZNF622
chr6	31760265	31760280	-	5'-UTR,CDS,intron-Distal	3.07889	23.85325	K562	YBX3
chr6	31760775	31760833	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.36928	10.88870	K562	FMR1
chr6	31759993	31760038	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.12865	3.46619	K562	GRWD1
chr6	31760540	31760544	-	5'-UTR,CDS,intron-Distal	3.71007	38.95845	K562	YBX3
chr6	31759995	31760053	-	5'-UTR,CDS,intron-Distal	3.53178	8.07998	HepG2	PPIG
chr6	31763429	31763496	-	5'-UTR,intron-Distal,intron-Proximal	3.42779	8.52472	HepG2	DDX3X
chr6	31760062	31760077	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.51593	6.54857	HepG2	PPIG
chr6	31762891	31762980	-	CDS,intron-Distal	3.58063	12.47562	K562	FXR2
chr6	31748856	31748882	-	CDS,intron-Distal	4.70459	11.24739	K562	FXR2
chr6	31748218	31748252	-	CDS,intron-Distal,intron-Proximal	3.52686	8.43905	HepG2	PPIG
chr6	31753043	31753071	-	CDS,intron-Distal	5.89574	15.38270	HepG2	PPIG
chr6	31762773	31762787	-	CDS,intron-Distal	4.26941	8.19380	K562	FMR1
chr6	31746871	31746932	-	CDS,intron-Distal,intron-Proximal	3.87215	10.57674	K562	METAP2
chr6	31753053	31753083	-	CDS,intron-Distal	4.83923	5.71225	HepG2	G3BP1
chr6	31752006	31752040	-	CDS,intron-Distal	4.44590	11.66830	K562	FXR2
chr6	31753069	31753108	-	CDS,intron-Distal,intron-Proximal	4.86377	9.75742	HepG2	BUD13
chr6	31748794	31748832	-	CDS,intron-Distal,intron-Proximal	3.84888	13.17304	K562	METAP2
chr6	31753460	31753508	-	CDS,intron-Distal	5.38879	17.28659	K562	FMR1
chr6	31746743	31746818	-	CDS,intron-Distal,intron-Proximal	4.16515	15.91453	K562	PABPC4
chr6	31749467	31749515	-	CDS,intron-Distal,intron-Proximal	4.10499	4.11230	K562	FXR1
chr6	31750842	31750883	-	CDS,intron-Distal,intron-Proximal	3.83499	9.09021	HepG2	PRPF8
chr6	31749371	31749383	-	CDS,intron-Distal,intron-Proximal	4.78279	18.43053	K562	FXR2
chr6	31747384	31747406	-	CDS,intron-Distal,intron-Proximal	3.95802	5.41633	K562	PCBP1
chr6	31747478	31747516	-	CDS,intron-Distal	4.80270	17.02120	K562	FXR2
chr6	31749467	31749485	-	CDS,intron-Distal,intron-Proximal	3.81154	6.85118	K562	FMR1
chr6	31752388	31752405	-	CDS,intron-Distal	4.26525	8.27565	K562	FXR2
chr6	31750446	31750523	-	CDS,intron-Distal,intron-Proximal	5.00731	18.73726	HepG2	PRPF8
chr6	31748685	31748710	-	CDS,intron-Distal,intron-Proximal	3.05386	18.60574	K562	YBX3
chr6	31749316	31749355	-	CDS,intron-Distal	5.56237	22.93613	K562	FXR2
chr6	31751990	31752066	-	CDS,intron-Distal,intron-Proximal	3.09897	4.26316	K562	FXR1
chr6	31750595	31750620	-	CDS,intron-Distal	4.63373	8.89719	K562	FXR2
chr6	31762792	31762856	-	CDS,intron-Distal	3.24077	7.47224	K562	PCBP1
chr6	31747014	31747054	-	CDS,intron-Distal	5.03488	15.17609	K562	FXR2
chr6	31751997	31752020	-	CDS,intron-Distal	3.99766	6.36347	HepG2	PPIG
chr6	31762633	31762670	-	CDS,intron-Distal	3.26714	8.09458	K562	YBX3
chr6	31750517	31750583	-	CDS,intron-Distal	3.94274	21.16246	K562	FMR1
chr6	31747888	31747929	-	CDS,intron-Distal,intron-Proximal	3.63226	9.05563	HepG2	PPIG
chr6	31747291	31747313	-	CDS,intron-Distal,intron-Proximal	4.92656	13.04971	K562	FMR1
chr6	31753020	31753043	-	CDS,intron-Distal,intron-Proximal	4.20003	11.57780	HepG2	PPIG
chr6	31746981	31747066	-	CDS,intron-Distal,intron-Proximal	5.06481	5.05521	HepG2	PABPN1
chr6	31762612	31762666	-	CDS,intron-Distal	4.03178	10.42618	HepG2	PPIG
chr6	31748537	31748606	-	CDS,intron-Distal,intron-Proximal	4.00958	6.40042	K562	EFTUD2
chr6	31752376	31752438	-	CDS,intron-Distal,intron-Proximal	4.32280	5.13243	HepG2	GRWD1
chr6	31748751	31748810	-	CDS,intron-Distal,intron-Proximal	5.85592	8.38577	HepG2	PRPF8
chr6	31750553	31750581	-	CDS,intron-Distal	4.03705	5.20093	K562	DDX24
chr6	31747546	31747591	-	CDS,intron-Distal	3.63226	9.05563	HepG2	PPIG
chr6	31747065	31747162	-	CDS,intron-Distal,intron-Proximal	4.40767	8.01283	HepG2	SF3A3
chr6	31749265	31749316	-	CDS,intron-Distal	4.84743	20.07612	K562	FXR2
chr6	31750948	31750964	-	CDS,intron-Distal,intron-Proximal	3.73440	4.31813	HepG2	G3BP1
chr6	31748679	31748715	-	CDS,intron-Distal,intron-Proximal	3.69332	12.90441	K562	METAP2
chr6	31748219	31748234	-	CDS,intron-Distal,intron-Proximal	3.62623	6.91717	K562	METAP2
chr6	31759423	31759489	-	CDS,intron-Distal	3.53656	4.72836	K562	ZNF800
chr6	31750920	31750960	-	CDS,intron-Distal	3.68381	9.24574	K562	FXR2
chr6	31762776	31762825	-	CDS,intron-Distal	3.52895	10.82157	K562	FXR2
chr6	31749265	31749301	-	CDS,intron-Distal	3.84258	10.76935	K562	FMR1
chr6	31752399	31752424	-	CDS,intron-Distal	3.65243	18.22928	K562	YBX3
chr6	31750501	31750511	-	CDS,intron-Distal,intron-Proximal	5.44186	10.56884	K562	FXR2
chr6	31748343	31748447	-	CDS,intron-Distal,intron-Proximal	5.54201	8.73870	HepG2	SF3A3
chr6	31762808	31762827	-	CDS,intron-Distal	3.88241	7.14100	K562	FMR1
chr6	31747384	31747411	-	CDS,intron-Distal,intron-Proximal	4.26767	9.31557	K562	PABPC4
chr6	31750497	31750517	-	CDS,intron-Distal,intron-Proximal	3.80769	8.23206	K562	FMR1
chr6	31750871	31750898	-	CDS,intron-Distal,intron-Proximal	4.44677	9.20049	K562	DDX24
chr6	31752379	31752419	-	CDS,intron-Distal	3.09776	7.32416	K562	METAP2
chr6	31752186	31752257	-	CDS,intron-Distal,intron-Proximal	4.14795	6.87736	K562	LIN28B
chr6	31762646	31762752	-	CDS,intron-Distal	4.13068	4.15139	HepG2	NKRF
chr6	31747796	31747856	-	CDS,intron-Distal,intron-Proximal	4.11211	3.72506	HepG2	PABPN1
chr6	31759433	31759479	-	CDS,intron-Distal	3.44677	7.93092	K562	DDX24
chr6	31762610	31762663	-	CDS,intron-Distal	3.19976	3.78281	HepG2	SRSF1
chr6	31759400	31759496	-	CDS,intron-Distal	3.26694	7.94214	K562	METAP2
chr6	31753435	31753456	-	CDS,intron-Distal	4.80596	12.26327	K562	FXR2
chr6	31747809	31747831	-	CDS,intron-Distal,intron-Proximal	4.35690	8.92211	K562	FXR2
chr6	31759419	31759463	-	CDS,intron-Distal	4.60751	16.12962	K562	FXR2
chr6	31751989	31752031	-	CDS,intron-Distal,intron-Proximal	4.14944	8.77191	HepG2	G3BP1
chr6	31748236	31748258	-	CDS,intron-Distal,intron-Proximal	5.48518	11.29529	K562	FMR1
chr6	31750872	31750885	-	CDS,intron-Distal,intron-Proximal	4.66045	5.71225	HepG2	G3BP1
chr6	31762618	31762663	-	CDS,intron-Distal	4.95069	11.65023	K562	FMR1
chr6	31759669	31759693	-	CDS,intron-Distal	5.70964	12.94682	K562	FXR2
chr6	31747516	31747561	-	CDS,intron-Distal	5.29077	14.30704	K562	FXR2
chr6	31753384	31753436	-	CDS,intron-Distal	4.17667	7.10432	HepG2	G3BP1
chr6	31753504	31753510	-	CDS,intron-Distal	3.10633	5.54400	K562	YBX3
chr6	31749350	31749383	-	CDS,intron-Distal,intron-Proximal	3.96707	3.55391	K562	FXR1
chr6	31760825	31760898	-	CDS,intron-Distal,intron-Proximal	3.66656	5.25053	K562	DHX30
chr6	31752464	31752491	-	CDS,intron-Distal	3.14280	7.92183	HepG2	BUD13
chr6	31747523	31747561	-	CDS,intron-Distal	4.76669	12.34900	K562	FMR1
chr6	31753375	31753432	-	CDS,intron-Distal	5.70100	25.94516	K562	FXR2
chr6	31762718	31762762	-	CDS,intron-Distal	4.11390	7.10432	HepG2	G3BP1
chr6	31752012	31752083	-	CDS,intron-Distal,intron-Proximal	4.47276	18.05327	K562	FMR1
chr6	31753025	31753088	-	CDS,intron-Distal	3.59286	8.61044	K562	DDX24
chr6	31749326	31749372	-	CDS,intron-Distal,intron-Proximal	4.23451	15.98334	K562	FMR1
chr6	31747384	31747411	-	CDS,intron-Distal,intron-Proximal	6.09889	16.32528	K562	FMR1
chr6	31747530	31747581	-	CDS,intron-Distal	3.57227	7.83335	K562	RPS3
chr6	31752194	31752259	-	CDS,intron-Distal,intron-Proximal	3.89875	12.21245	K562	FMR1
chr6	31750497	31750507	-	CDS,intron-Distal,intron-Proximal	3.45462	7.43930	K562	YBX3
chr6	31753381	31753457	-	CDS,intron-Distal	3.93518	3.92702	K562	FXR1
chr6	31748215	31748256	-	CDS,intron-Distal,intron-Proximal	3.59402	4.02339	HepG2	PABPN1
chr6	31748830	31748892	-	CDS,intron-Distal	3.79952	3.36793	K562	FXR1
chr6	31746792	31746844	-	CDS,intron-Distal	4.78063	5.58993	HepG2	PABPN1
chr6	31752055	31752084	-	CDS,intron-Distal,intron-Proximal	3.14440	4.85633	HepG2	G3BP1
chr6	31753456	31753508	-	CDS,intron-Distal	4.25090	18.01442	K562	FXR2
chr6	31751990	31752026	-	CDS,intron-Distal,intron-Proximal	4.24374	9.53524	K562	DDX24
chr6	31747352	31747406	-	CDS,intron-Distal,intron-Proximal	4.47619	8.44604	HepG2	PRPF8
chr6	31753027	31753068	-	CDS,intron-Distal	3.43056	3.28366	HepG2	BCLAF1
chr6	31749372	31749382	-	CDS,intron-Distal,intron-Proximal	4.37399	8.87911	K562	FMR1
chr6	31747043	31747103	-	CDS,intron-Distal,intron-Proximal	3.14678	7.07399	HepG2	SF3B4
chr6	31747892	31747929	-	CDS,intron-Distal,intron-Proximal	4.63218	17.02120	K562	FXR2
chr6	31746884	31746976	-	CDS,intron-Distal,intron-Proximal	5.08364	6.39410	HepG2	PABPN1
chr6	31747515	31747559	-	CDS,intron-Distal	3.40076	5.25539	K562	PABPC4
chr6	31747913	31747928	-	CDS,intron-Distal,intron-Proximal	4.86871	5.64902	K562	METAP2
chr6	31760872	31760950	-	CDS,intron-Distal,intron-Proximal	5.08564	7.09786	HepG2	AQR
chr6	31747411	31747464	-	CDS,intron-Distal,intron-Proximal	6.43037	19.22401	K562	FMR1
chr6	31748334	31748431	-	CDS,intron-Distal,intron-Proximal	5.99819	12.80845	K562	SF3B4
chr6	31762619	31762658	-	CDS,intron-Distal	5.11511	16.36377	K562	FXR2
chr6	31748178	31748234	-	CDS,intron-Distal,intron-Proximal	5.09032	12.09955	HepG2	PRPF8
chr6	31752474	31752491	-	CDS,intron-Distal	3.03565	5.40165	K562	YBX3
chr6	31750933	31750944	-	CDS,intron-Distal	3.34079	10.89654	K562	YBX3
chr6	31747805	31747833	-	CDS,intron-Distal,intron-Proximal	3.60799	7.08812	K562	FMR1
chr6	31750461	31750532	-	CDS,intron-Distal,intron-Proximal	4.91724	5.90930	HepG2	AQR
chr6	31745430	31745492	-	CDS,intron-Distal	4.02797	6.39986	K562	SF3B4
chr6	31749265	31749299	-	CDS,intron-Distal	3.63848	6.70085	HepG2	PPIG
chr6	31748608	31748651	-	CDS,intron-Distal,intron-Proximal	4.19309	5.93840	HepG2	PRPF8
chr6	31750497	31750520	-	CDS,intron-Distal,intron-Proximal	5.22396	6.86115	K562	METAP2
chr6	31753377	31753460	-	CDS,intron-Distal	4.16119	11.19787	K562	METAP2
chr6	31753071	31753102	-	CDS,intron-Distal	3.98313	9.90777	HepG2	PPIG
chr6	31762878	31762930	-	CDS,intron-Distal	3.71104	5.63243	K562	IGF2BP2
chr6	31748217	31748244	-	CDS,intron-Distal,intron-Proximal	4.44911	12.66214	K562	FXR2
chr6	31753028	31753069	-	CDS,intron-Distal	4.80924	8.82884	K562	RPS3
chr6	31753374	31753444	-	CDS,intron-Distal	6.02574	30.91506	K562	FMR1
chr6	31748793	31748824	-	CDS,intron-Distal,intron-Proximal	3.04758	5.67287	K562	DDX24
chr6	31759412	31759467	-	CDS,intron-Distal	3.85617	14.24045	K562	FMR1
chr6	31747384	31747409	-	CDS,intron-Distal,intron-Proximal	4.12468	11.09826	K562	FXR2
chr6	31751992	31752029	-	CDS,intron-Distal	3.65707	3.02919	K562	GRWD1
chr6	31750552	31750620	-	CDS,intron-Distal	5.62690	11.65738	HepG2	G3BP1
chr6	31762808	31762894	-	CDS,intron-Distal	3.50697	8.48142	K562	GEMIN5
chr6	31750401	31750409	-	CDS,intron-Distal,intron-Proximal	4.38562	7.17313	K562	FMR1
chr6	31747424	31747478	-	CDS,intron-Distal	3.94844	14.92919	K562	FXR2
chr6	31747489	31747523	-	CDS,intron-Distal	4.76669	12.34900	K562	FMR1
chr6	31750497	31750560	-	CDS,intron-Distal,intron-Proximal	3.49874	4.86893	HepG2	SUB1
chr6	31750951	31750960	-	CDS,intron-Distal	3.85496	5.52342	HepG2	PPIG
chr6	31753094	31753153	-	CDS,intron-Distal,intron-Proximal	3.64754	10.51632	HepG2	SF3B4
chr6	31749474	31749486	-	CDS,intron-Distal,intron-Proximal	4.39822	16.88831	K562	FXR2
chr6	31750522	31750584	-	CDS,intron-Distal	4.67654	28.28194	K562	FXR2
chr6	31752043	31752082	-	CDS,intron-Distal,intron-Proximal	5.11511	15.84269	K562	FXR2
chr6	31747464	31747485	-	CDS,intron-Distal	4.86156	11.99936	K562	FMR1
chr6	31753022	31753048	-	CDS,intron-Distal,intron-Proximal	3.72596	6.50179	HepG2	BUD13
chr6	31749301	31749326	-	CDS,intron-Distal	4.46047	11.08617	K562	FMR1
chr6	31747276	31747312	-	CDS,intron-Distal,intron-Proximal	3.72002	12.14680	K562	PABPC4
chr6	31750908	31750931	-	CDS,intron-Distal	3.14690	12.93689	K562	YBX3
chr6	31747892	31747930	-	CDS,intron-Distal,intron-Proximal	4.85015	6.92731	HepG2	PRPF8
chr6	31750594	31750622	-	CDS,intron-Distal	4.52096	9.08097	K562	DDX24
chr6	31746758	31746781	-	CDS,intron-Distal	4.44469	4.54659	HepG2	G3BP1
chr6	31747295	31747312	-	CDS,intron-Distal,intron-Proximal	3.68145	8.38301	K562	FXR2
chr6	31748651	31748706	-	CDS,intron-Distal,intron-Proximal	3.07073	8.05533	K562	DDX24
chr6	31749467	31749474	-	CDS,intron-Distal,intron-Proximal	4.79264	18.10088	K562	FXR2
chr6	31746972	31747047	-	CDS,intron-Distal,intron-Proximal	3.45268	10.41365	HepG2	PPIG
chr6	31762630	31762655	-	CDS,intron-Distal	3.38950	5.10345	K562	METAP2
chr6	31749355	31749368	-	CDS,intron-Distal	4.84986	26.50569	K562	FXR2
chr6	31747172	31747225	-	CDS,intron-Distal,intron-Proximal	3.67202	6.46344	HepG2	PRPF8
chr6	31748953	31748977	-	intron-Distal,intron-Proximal	3.67833	3.33980	HepG2	SF3B4
chr6	31761991	31762080	-	intron-Distal	4.83523	6.45754	K562	TARDBP
chr6	31749990	31750028	-	intron-Distal,intron-Proximal	4.74421	8.11807	HepG2	PRPF8
chr6	31748206	31748218	-	intron-Distal,intron-Proximal	3.35334	8.18888	K562	AQR
chr6	31750467	31750496	-	intron-Distal,intron-Proximal	5.07551	6.16445	HepG2	PPIG
chr6	31749545	31749601	-	intron-Distal,intron-Proximal	5.67477	7.84667	K562	EFTUD2
chr6	31747938	31747988	-	intron-Distal,intron-Proximal	5.28345	7.81477	K562	SF3B4
chr6	31750223	31750280	-	intron-Distal,intron-Proximal	5.99989	8.08771	HepG2	EFTUD2
chr6	31746695	31746728	-	intron-Distal,intron-Proximal	5.49660	7.63570	K562	AQR
chr6	31746728	31746744	-	intron-Distal,intron-Proximal	4.12363	5.63763	K562	AQR
chr6	31749223	31749253	-	intron-Distal,intron-Proximal	3.52083	6.34662	HepG2	PRPF8
chr6	31747103	31747154	-	intron-Distal,intron-Proximal	5.65210	14.33935	HepG2	SF3B4
chr6	31748719	31748772	-	intron-Distal,intron-Proximal	4.74915	4.90235	K562	SF3B4
chr6	31748720	31748768	-	intron-Distal,intron-Proximal	3.06056	3.13970	HepG2	SF3B4
chr6	31750267	31750305	-	intron-Distal,intron-Proximal	4.33220	6.23016	HepG2	PRPF8
chr6	31745442	31745487	-	intron-Distal	4.12826	4.07325	HepG2	SF3B4
chr6	31760082	31760141	-	intron-Distal,intron-Proximal	5.34136	6.40247	K562	SF3B4
chr6	31746673	31746683	-	intron-Distal,intron-Proximal	4.71499	9.65125	K562	TROVE2
chr6	31753108	31753153	-	intron-Distal,intron-Proximal	5.87655	9.95947	K562	SF3B4
chr6	31745977	31746035	-	intron-Distal,intron-Proximal	3.11957	3.48223	HepG2	RBFOX2
chr6	31748900	31748942	-	intron-Distal,intron-Proximal	5.78793	7.02785	HepG2	SF3A3
chr6	31747941	31747980	-	intron-Distal,intron-Proximal	3.41471	3.60305	HepG2	SF3B4
chr6	31760901	31760950	-	intron-Distal,intron-Proximal	4.16632	4.50924	HepG2	SF3B4
chr6	31749986	31750033	-	intron-Distal,intron-Proximal	3.19715	4.80699	HepG2	RBM22
chr6	31749748	31749794	-	intron-Distal,intron-Proximal	4.02086	3.31153	K562	GTF2F1
chr6	31748347	31748438	-	intron-Distal,intron-Proximal	3.33562	6.49379	K562	EFTUD2
chr6	31749214	31749257	-	intron-Distal,intron-Proximal	5.26427	6.75320	K562	AQR
chr6	31760089	31760137	-	intron-Distal,intron-Proximal	5.17552	8.89842	HepG2	SF3B4
chr6	31749077	31749147	-	intron-Distal,intron-Proximal	3.76247	4.98422	K562	PRPF8
chr6	31748146	31748206	-	intron-Distal,intron-Proximal	5.34233	14.19592	K562	AQR
chr6	31752497	31752571	-	intron-Distal,intron-Proximal	4.46133	11.33835	K562	SF3B4
chr6	31746641	31746673	-	intron-Distal,intron-Proximal	4.80616	10.85988	K562	TROVE2
chr6	31750222	31750277	-	intron-Distal,intron-Proximal	5.90891	8.41916	K562	EFTUD2
chr6	31749767	31749812	-	intron-Distal,intron-Proximal	4.62363	4.09264	K562	AQR
chr6	31746727	31746741	-	intron-Distal,intron-Proximal	4.89122	4.02817	HepG2	PRPF8
chr6	31749986	31750027	-	intron-Distal,intron-Proximal	4.43047	3.25089	HepG2	AQR
chr6	31748915	31748953	-	intron-Distal,intron-Proximal	5.45235	11.21358	HepG2	SF3B4
chr6	31745550	31745582	-	intron-Distal	3.53082	3.88924	K562	PRPF8
chr6	31752505	31752571	-	intron-Distal,intron-Proximal	6.31867	18.27992	HepG2	SF3B4
chr6	31752125	31752171	-	intron-Distal,intron-Proximal	3.33777	5.62208	HepG2	PRPF8
chr6	31753294	31753341	-	intron-Distal,intron-Proximal	4.55949	7.50107	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for VARS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VARS is not available on ENCORE database.
125 RBPs can affect the levels of VARS.

The Knockdown/knockout RNA-Seq assay for VARS is not available on ENCORE database.

125 RBPs can affect the gene expression of VARS :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VARS	ENSG00000204394.8	2993.62520	2184.65730	0.45440	11.12890	10.08100	HepG2	ACO1
VARS	ENSG00000204394.8	4319.84540	2090.72940	1.04690	9.11710	8.21360	HepG2	AKAP1
VARS	ENSG00000204394.8	4667.13410	3759.36250	0.31190	5.58530	4.66880	HepG2	AUH
VARS	ENSG00000204394.8	996.23510	1750.70040	-0.81340	4.55790	3.42950	HepG2	BCLAF1
VARS	ENSG00000204394.8	3193.00670	2057.12540	0.63420	2.49780	1.92580	HepG2	BOP1
VARS	ENSG00000204394.8	1410.47940	1894.14130	-0.42540	4.92450	3.30330	HepG2	BUD13
VARS	ENSG00000204394.8	920.77070	1643.42600	-0.83580	3.95090	3.03660	HepG2	CIRBP
VARS	ENSG00000204394.8	2678.12350	2184.01980	0.29410	5.41130	4.53860	HepG2	CKAP4
VARS	ENSG00000204394.8	1520.87060	1240.93480	0.29340	2.96600	1.91250	HepG2	YBX3
VARS	ENSG00000204394.8	3010.39590	2109.90090	0.51270	10.98910	9.87500	HepG2	CELF1
VARS	ENSG00000204394.8	1691.35430	2020.42020	-0.25650	3.70520	2.75900	HepG2	DDX19B
VARS	ENSG00000204394.8	1572.19690	1242.62140	0.33930	3.75830	2.42030	HepG2	DDX1
VARS	ENSG00000204394.8	899.45470	1353.02200	-0.58910	6.75770	5.74530	HepG2	DDX21
VARS	ENSG00000204394.8	832.17710	1325.14330	-0.67120	6.86210	5.43450	HepG2	DDX24
VARS	ENSG00000204394.8	3012.06780	1720.93010	0.80750	5.80420	4.93890	HepG2	DDX6
VARS	ENSG00000204394.8	880.35370	1175.20750	-0.41680	3.64230	2.52540	HepG2	DHX30
VARS	ENSG00000204394.8	1132.57530	2090.08300	-0.88400	21.33700	19.87610	HepG2	DKC1
VARS	ENSG00000204394.8	1422.34000	1218.44150	0.22310	1.94250	1.34200	HepG2	DNAJC21
VARS	ENSG00000204394.8	2513.32420	1917.84190	0.39000	3.51660	2.19910	HepG2	EIF2S2
VARS	ENSG00000204394.8	1559.52960	1082.89340	0.52610	4.48740	3.35900	HepG2	EIF3D
VARS	ENSG00000204394.8	4002.55540	1779.57860	1.16930	13.32650	11.88150	HepG2	EIF4B
VARS	ENSG00000204394.8	1613.24620	2144.01040	-0.41030	3.80140	2.85700	HepG2	EIF4G2
VARS	ENSG00000204394.8	1439.02980	2190.16540	-0.60590	8.24730	6.50720	HepG2	ESF1
VARS	ENSG00000204394.8	1059.34010	1649.12200	-0.63850	3.18660	1.82680	HepG2	FKBP4
VARS	ENSG00000204394.8	2471.67600	1844.54060	0.42210	2.33340	1.69600	HepG2	FXR1
VARS	ENSG00000204394.8	516.05420	1230.11550	-1.25320	24.07600	22.49530	HepG2	HNRNPA1
VARS	ENSG00000204394.8	858.16290	1368.30670	-0.67310	6.83280	5.78150	HepG2	HNRNPC
VARS	ENSG00000204394.8	2129.89610	3027.45450	-0.50730	11.45010	10.12560	HepG2	HNRNPF
VARS	ENSG00000204394.8	4707.32340	1733.44830	1.44120	42.78450	40.33190	HepG2	HNRNPK
VARS	ENSG00000204394.8	1233.23520	2042.54980	-0.72790	2.15010	1.58850	HepG2	HNRNPLL
VARS	ENSG00000204394.8	1966.06580	2981.18780	-0.60060	8.38570	7.18860	HepG2	IGF2BP1
VARS	ENSG00000204394.8	2263.98890	1738.42330	0.38100	2.02450	1.43790	HepG2	IGF2BP2
VARS	ENSG00000204394.8	1653.48440	1996.94950	-0.27230	4.21390	2.96970	HepG2	KIF1C
VARS	ENSG00000204394.8	1988.36430	1263.66150	0.65390	3.23140	2.00480	HepG2	LARP7
VARS	ENSG00000204394.8	5015.67550	1855.32480	1.43470	26.17750	24.41540	HepG2	MATR3
VARS	ENSG00000204394.8	1637.65550	1133.25570	0.53110	3.24370	2.10360	HepG2	METAP2
VARS	ENSG00000204394.8	907.99180	2083.96240	-1.19860	3.26110	2.20280	HepG2	MTPAP
VARS	ENSG00000204394.8	1344.58010	1734.91670	-0.36770	3.61740	2.23060	HepG2	NAA15
VARS	ENSG00000204394.8	2851.66180	1898.87160	0.58660	5.13540	4.28460	HepG2	NCBP2
VARS	ENSG00000204394.8	2460.04110	1741.96320	0.49790	3.27000	1.70650	HepG2	NKRF
VARS	ENSG00000204394.8	2781.14160	2249.54240	0.30590	3.44840	2.59850	HepG2	NOL12
VARS	ENSG00000204394.8	2794.54940	1820.52210	0.61820	2.57130	1.52150	HepG2	NONO
VARS	ENSG00000204394.8	2035.12790	1186.82130	0.77790	2.32870	1.52800	HepG2	PABPC1
VARS	ENSG00000204394.8	2431.07600	1817.28320	0.41970	2.80610	2.19620	HepG2	PCBP1
VARS	ENSG00000204394.8	1519.58180	2244.16850	-0.56250	12.40750	10.94490	HepG2	PRPF4
VARS	ENSG00000204394.8	2417.83270	1849.33260	0.38660	3.33170	2.74250	HepG2	PTBP1
VARS	ENSG00000204394.8	3401.92080	2279.58200	0.57750	21.54810	20.21230	HepG2	PUM1
VARS	ENSG00000204394.8	1522.13970	2225.19140	-0.54780	13.66070	12.47020	HepG2	PUS1
VARS	ENSG00000204394.8	735.98160	1257.62180	-0.77300	2.02480	1.41240	HepG2	RAVER1
VARS	ENSG00000204394.8	3152.88520	2437.38180	0.37120	3.98160	2.97420	HepG2	RBM15
VARS	ENSG00000204394.8	4331.70420	3607.72470	0.26370	3.13690	2.59410	HepG2	RBM22
VARS	ENSG00000204394.8	1810.76340	3261.17010	-0.84880	16.11280	14.72900	HepG2	RPLP0
VARS	ENSG00000204394.8	1803.01030	1053.83120	0.77470	13.25700	12.04030	HepG2	RPS19
VARS	ENSG00000204394.8	2241.79610	1434.63250	0.64390	2.81410	1.72980	HepG2	RPS5
VARS	ENSG00000204394.8	1076.79820	1511.02170	-0.48880	2.26570	1.54720	HepG2	RRP9
VARS	ENSG00000204394.8	1603.12810	1210.46130	0.40520	6.92270	5.97130	HepG2	SAFB2
VARS	ENSG00000204394.8	1156.82020	2021.50240	-0.80530	2.30860	1.66120	HepG2	SF3B1
VARS	ENSG00000204394.8	1683.33340	2059.06460	-0.29070	4.50870	3.64720	HepG2	SLBP
VARS	ENSG00000204394.8	2100.72250	1411.57190	0.57350	16.48220	15.11420	HepG2	SMN1
VARS	ENSG00000204394.8	2361.23710	1285.93500	0.87660	5.28890	3.93950	HepG2	SMNDC1
VARS	ENSG00000204394.8	1376.24990	2249.35420	-0.70880	2.09560	1.41900	HepG2	SNRNP70
VARS	ENSG00000204394.8	1320.97310	4074.71160	-1.62510	99.92180	98.00870	HepG2	SRFBP1
VARS	ENSG00000204394.8	3322.21210	2120.27050	0.64780	19.60700	18.14450	HepG2	SRSF5
VARS	ENSG00000204394.8	1679.87530	2974.34160	-0.82420	18.43160	16.92210	HepG2	SRSF7
VARS	ENSG00000204394.8	1584.05310	3537.67340	-1.15920	61.53480	59.90930	HepG2	SSB
VARS	ENSG00000204394.8	1705.83380	1134.58060	0.58820	4.62350	3.16500	HepG2	STIP1
VARS	ENSG00000204394.8	3611.95960	2411.31140	0.58290	8.82150	7.81600	HepG2	SUCLG1
VARS	ENSG00000204394.8	1281.17270	1723.67010	-0.42800	4.68950	3.47980	HepG2	SUPT6H
VARS	ENSG00000204394.8	952.88710	1972.31680	-1.04950	5.90720	4.97620	HepG2	SUPV3L1
VARS	ENSG00000204394.8	1246.40010	1806.57190	-0.53550	3.69300	3.06080	HepG2	TAF15
VARS	ENSG00000204394.8	826.18920	1320.65800	-0.67670	10.67340	9.80150	HepG2	TIAL1
VARS	ENSG00000204394.8	2432.97840	1332.58730	0.86840	30.16320	28.54580	HepG2	TRIM56
VARS	ENSG00000204394.8	1640.50300	2183.88800	-0.41280	4.02570	3.27400	HepG2	U2AF1
VARS	ENSG00000204394.8	3856.11820	2220.67180	0.79610	5.86460	4.61480	HepG2	UBE2L3
VARS	ENSG00000204394.8	1832.12120	1164.90970	0.65320	5.71080	4.61110	HepG2	UCHL5
VARS	ENSG00000204394.8	2653.39840	2081.13170	0.35040	6.47780	5.48330	HepG2	UPF1
VARS	ENSG00000204394.8	1104.01000	1805.27260	-0.70950	3.44400	2.31780	HepG2	UPF2
VARS	ENSG00000204394.8	2278.42870	2009.25090	0.18130	1.88850	1.37340	HepG2	UTP3
VARS	ENSG00000204394.8	2080.06700	1383.71100	0.58800	2.90800	1.82150	HepG2	XRCC6
VARS	ENSG00000204394.8	1229.16410	1941.53840	-0.65950	3.28920	2.50340	HepG2	XRN2
VARS	ENSG00000204394.8	1383.38160	2214.66810	-0.67890	21.13630	19.59910	HepG2	ZC3H8
VARS	ENSG00000204394.8	2902.58430	2288.84650	0.34260	7.81290	7.01530	HepG2	ZNF622
VARS	ENSG00000204394.8	10077.60100	8868.89290	0.18420	3.00330	2.41540	K562	AGGF1
VARS	ENSG00000204394.8	7437.20610	6053.84870	0.29680	4.77520	2.75330	K562	AKAP1
VARS	ENSG00000204394.8	13266.00200	9228.54680	0.52350	8.38090	7.18230	K562	AKAP8L
VARS	ENSG00000204394.8	15508.20870	12018.33120	0.36770	4.58920	2.92780	K562	APOBEC3C
VARS	ENSG00000204394.8	4539.00600	11683.15480	-1.36400	44.00420	41.91310	K562	AQR
VARS	ENSG00000204394.8	2313.51550	3744.71060	-0.69480	10.26780	8.53710	K562	BOP1
VARS	ENSG00000204394.8	6127.91800	8175.42330	-0.41590	6.40000	4.10730	K562	CEBPZ
VARS	ENSG00000204394.8	6052.98860	8851.99730	-0.54840	3.20570	2.04900	K562	CNOT7
VARS	ENSG00000204394.8	12197.53690	10102.70580	0.27170	4.58100	3.13100	K562	CPEB4
VARS	ENSG00000204394.8	2406.14780	3981.72000	-0.72670	15.75310	13.84710	K562	CPSF6
VARS	ENSG00000204394.8	13538.24000	16749.02310	-0.30700	4.44320	3.19970	K562	CELF1
VARS	ENSG00000204394.8	7033.96850	5552.27010	0.34120	3.50660	1.99950	K562	DDX27
VARS	ENSG00000204394.8	12354.40860	10453.07430	0.24100	4.06140	3.29230	K562	DDX47
VARS	ENSG00000204394.8	10888.10290	6534.35690	0.73650	4.49810	2.83270	K562	EEF2
VARS	ENSG00000204394.8	4244.23660	6312.48170	-0.57270	5.94660	4.56960	K562	EFTUD2
VARS	ENSG00000204394.8	7827.43000	9459.83070	-0.27330	4.43080	3.54780	K562	EIF2S2
VARS	ENSG00000204394.8	5611.76610	3152.05340	0.83210	27.36660	24.82360	K562	EIF3G
VARS	ENSG00000204394.8	4091.66110	6408.54860	-0.64730	11.11100	9.44250	K562	EIF4A3
VARS	ENSG00000204394.8	3103.21340	5348.58850	-0.78540	12.03970	9.51600	K562	FKBP4
VARS	ENSG00000204394.8	2039.35540	4051.27050	-0.99030	21.42880	18.96820	K562	FMR1
VARS	ENSG00000204394.8	2250.55780	3433.80190	-0.60950	6.11380	4.70000	K562	FTO
VARS	ENSG00000204394.8	862.92150	2569.83970	-1.57440	12.55170	10.81890	K562	G3BP2
VARS	ENSG00000204394.8	8763.31960	10443.99120	-0.25310	3.40660	2.13980	K562	GLRX3
VARS	ENSG00000204394.8	9595.19570	12605.66360	-0.39370	5.70410	4.61500	K562	GRSF1
VARS	ENSG00000204394.8	7397.41100	10926.02780	-0.56270	6.43790	4.84240	K562	HNRNPA1
VARS	ENSG00000204394.8	2274.39030	6159.93340	-1.43740	57.39050	54.84880	K562	HNRNPC
VARS	ENSG00000204394.8	9157.19190	12100.65190	-0.40210	3.78780	2.74040	K562	HNRNPU
VARS	ENSG00000204394.8	7878.54990	4880.34670	0.69080	3.08580	1.98170	K562	IGF2BP2
VARS	ENSG00000204394.8	5194.59320	8078.10020	-0.63700	3.31360	1.73730	K562	ILF2
VARS	ENSG00000204394.8	1744.89180	3246.03480	-0.89550	7.82090	6.15820	K562	KRR1
VARS	ENSG00000204394.8	8130.86760	5114.27320	0.66880	9.51550	7.70170	K562	MATR3
VARS	ENSG00000204394.8	3059.79880	3710.75740	-0.27830	2.64330	1.79110	K562	METAP2
VARS	ENSG00000204394.8	12087.10080	14517.94910	-0.26440	2.57030	1.48460	K562	MSI2
VARS	ENSG00000204394.8	8465.85550	10980.59720	-0.37520	10.43350	8.96810	K562	MTPAP
VARS	ENSG00000204394.8	9108.59320	12199.85490	-0.42160	15.96500	14.37810	K562	NSUN2
VARS	ENSG00000204394.8	3303.14010	4559.50820	-0.46500	2.17050	1.30840	K562	PCBP2
VARS	ENSG00000204394.8	6611.70550	10196.03520	-0.62490	8.07620	6.65620	K562	PCBP3
VARS	ENSG00000204394.8	6095.85870	7820.55630	-0.35940	5.17440	4.07750	K562	POLR2G
VARS	ENSG00000204394.8	4846.03750	6142.81400	-0.34210	2.75990	2.01260	K562	PRPF8
VARS	ENSG00000204394.8	6593.50040	4979.78470	0.40490	3.16060	2.45580	K562	PTBP1
VARS	ENSG00000204394.8	11007.41960	15808.28100	-0.52220	11.86690	9.58630	K562	PUM1
VARS	ENSG00000204394.8	12877.92280	15487.56780	-0.26620	4.67120	3.41210	K562	PUM2
VARS	ENSG00000204394.8	10343.21540	8917.36250	0.21390	2.76010	2.16770	K562	RBM15
VARS	ENSG00000204394.8	4534.21800	7815.56250	-0.78550	3.78740	1.92030	K562	RBM39
VARS	ENSG00000204394.8	5585.36980	3745.14210	0.57650	4.40580	3.10470	K562	RPS3
VARS	ENSG00000204394.8	4550.72440	6279.45410	-0.46450	3.60890	2.07610	K562	RRP9
VARS	ENSG00000204394.8	8361.86550	6968.77660	0.26280	2.27680	1.30240	K562	SAFB
VARS	ENSG00000204394.8	6868.31190	12038.99820	-0.80970	20.14520	18.11300	K562	SF3A3
VARS	ENSG00000204394.8	1614.74510	3615.38200	-1.16280	21.54970	18.84920	K562	SF3B1
VARS	ENSG00000204394.8	4528.51070	6035.21350	-0.41440	3.13900	1.78550	K562	SLBP
VARS	ENSG00000204394.8	10223.97760	12334.29080	-0.27070	2.82990	1.88590	K562	SRPK2
VARS	ENSG00000204394.8	4874.08950	3615.51510	0.43080	6.11850	4.44240	K562	SRSF4
VARS	ENSG00000204394.8	6243.73520	4611.99890	0.43690	2.76090	1.71360	K562	SRSF5
VARS	ENSG00000204394.8	5591.74080	8384.30420	-0.58440	9.24630	7.09860	K562	SRSF7
VARS	ENSG00000204394.8	2457.88870	3251.41010	-0.40360	4.78420	3.03530	K562	SSB
VARS	ENSG00000204394.8	4647.15250	7981.24900	-0.78030	3.82240	2.03840	K562	SUPT6H
VARS	ENSG00000204394.8	4014.46150	5945.40460	-0.56660	6.42320	4.82790	K562	SUPV3L1
VARS	ENSG00000204394.8	6422.04250	4940.26210	0.37830	2.61770	1.92830	K562	TARDBP
VARS	ENSG00000204394.8	7182.60420	4765.68240	0.59170	6.14800	4.85840	K562	TIA1
VARS	ENSG00000204394.8	3416.53540	5312.24620	-0.63680	8.43330	6.72670	K562	TIAL1
VARS	ENSG00000204394.8	6849.17910	4678.72970	0.54970	3.02860	1.87840	K562	TRA2A
VARS	ENSG00000204394.8	11957.80400	14842.40050	-0.31180	5.13410	3.39150	K562	TROVE2
VARS	ENSG00000204394.8	1717.33850	2571.55890	-0.58250	7.96680	6.59390	K562	U2AF2
VARS	ENSG00000204394.8	5108.34870	6293.56290	-0.30100	2.68840	1.68650	K562	UCHL5
VARS	ENSG00000204394.8	7873.84760	12935.81030	-0.71620	31.49270	29.37730	K562	UPF1
VARS	ENSG00000204394.8	6507.47770	11068.69020	-0.76630	18.90650	16.65570	K562	WDR3
VARS	ENSG00000204394.8	10293.03990	11510.66360	-0.16130	2.51760	1.70800	K562	WDR43
VARS	ENSG00000204394.8	11239.32820	13842.21870	-0.30050	3.40320	1.96210	K562	WRN
VARS	ENSG00000204394.8	9254.67340	13161.54400	-0.50810	7.74080	6.17670	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VARS is not available on ENCORE database.

22 RBPs can affect the splicing of VARS :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.06700	0.00000	0.00000	excluded	K562	PRPF8
SE	VARS	ENSG00000204394.8	chr6	-	31749467	31749538			31749257	31749383	31749623	31749729	-0.16200	0.00000	0.00000	excluded	K562	PRPF8
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.13800	0.00000	0.00000	excluded	HepG2	U2AF1
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.05600	0.00033	0.03224	excluded	HepG2	TBRG4
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.13300	0.00000	0.00000	excluded	HepG2	U2AF2
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.05400	0.00000	0.00000	excluded	K562	EFTUD2
SE	VARS	ENSG00000204394.8	chr6	-	31749467	31749538			31749257	31749383	31749623	31749729	-0.10400	0.00000	0.00000	excluded	K562	EFTUD2
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.11800	0.00000	0.00001	excluded	HepG2	SF3A3
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.05200	0.00120	0.07478	excluded	HepG2	IGF2BP3
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.08300	0.00017	0.01138	excluded	HepG2	SF3B4
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.09100	0.00000	0.00000	excluded	K562	SF3B1
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.07400	0.00010	0.00612	excluded	HepG2	HNRNPC
SE	VARS	ENSG00000204394.8	chr6	-	31751990	31752085			31750872	31750963	31752170	31752279	-0.05300	0.00000	0.00000	excluded	K562	HNRNPC
A3SS	VARS	ENSG00000204394.8	chr6	-	31753022	31753143			31753022	31753104	31753345	31753510	0.05100	0.00143	0.05085	longer	K562	U2AF2
A3SS	VARS	ENSG00000204394.8	chr6	-	31752170	31752270			31752170	31752267	31752371	31752491	-0.56300	0.00000	0.01008	shorter	K562	PUM2
A5SS	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749623	31749729	31749165	31749383	-0.26200	0.00000	0.00000	shorter	K562	PRPF8
A5SS	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749623	31749729	31749165	31749383	-0.17900	0.00000	0.00000	shorter	K562	EFTUD2
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.23000	0.00000	0.00000	included	HepG2	SF3A3
RI	VARS	ENSG00000204394.8	chr6	-	31750178	31750399			31750178	31750220	31750306	31750399	0.16700	0.00272	0.02094	included	HepG2	U2AF2
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.16500	0.00136	0.01911	included	HepG2	PRPF8
RI	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749467	31749538	31749623	31749729	0.12000	0.00000	0.00000	included	HepG2	PRPF8
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.14700	0.00009	0.01269	included	HepG2	EFTUD2
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.18100	0.00000	0.00000	included	K562	PRPF8
RI	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749467	31749538	31749623	31749729	0.09800	0.00000	0.00000	included	K562	PRPF8
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.10000	0.00004	0.00183	included	K562	RBM22
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.19300	0.00000	0.00003	included	HepG2	U2AF1
RI	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749467	31749538	31749623	31749729	0.15800	0.00000	0.00010	included	HepG2	U2AF1
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.15500	0.00612	0.08310	included	HepG2	TIAL1
RI	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749467	31749538	31749623	31749729	0.05900	0.00000	0.00000	included	HepG2	RBM22
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.11600	0.00002	0.00040	included	HepG2	RBM22
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.31500	0.00000	0.00000	included	K562	EFTUD2
RI	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749467	31749538	31749623	31749729	0.16300	0.00000	0.00000	included	K562	EFTUD2
RI	VARS	ENSG00000204394.8	chr6	-	31748481	31748700			31748481	31748560	31748646	31748700	0.06300	0.00000	0.00000	included	K562	AQR
RI	VARS	ENSG00000204394.8	chr6	-	31750178	31750399			31750178	31750220	31750306	31750399	0.07000	0.00000	0.00000	included	K562	AQR
RI	VARS	ENSG00000204394.8	chr6	-	31749467	31749729			31749467	31749538	31749623	31749729	0.09000	0.00000	0.00000	included	K562	AQR
RI	VARS	ENSG00000204394.8	chr6	-	31748670	31748900			31748670	31748715	31748795	31748900	0.05300	0.00000	0.00000	included	K562	AQR
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.18300	0.00000	0.00000	included	K562	AQR
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.13800	0.00000	0.00007	included	HepG2	LARP4
RI	VARS	ENSG00000204394.8	chr6	-	31750306	31750622			31750306	31750410	31750497	31750622	0.05200	0.00000	0.00007	included	K562	FXR1
MXE	VARS	ENSG00000204394.8	chr6	-	31750306	31750410	31750497	31750622	31750061	31750220	31750872	31750963	0.07700	0.00581	0.08040	1included	HepG2	U2AF1
MXE	VARS	ENSG00000204394.8	chr6	-	31750306	31750410	31750570	31750622	31750061	31750220	31750872	31750963	-0.12100	0.00001	0.00051	2included	K562	XRN2
MXE	VARS	ENSG00000204394.8	chr6	-	31750306	31750410	31750497	31750622	31750061	31750220	31750872	31750963	-0.15600	0.00000	0.00000	2included	K562	NONO
MXE	VARS	ENSG00000204394.8	chr6	-	31750306	31750410	31750497	31750622	31750061	31750220	31750872	31750963	0.06900	0.00023	0.01323	1included	K562	LIN28B
MXE	VARS	ENSG00000204394.8	chr6	-	31750306	31750410	31750497	31750622	31750061	31750220	31750872	31750963	0.09500	0.00039	0.02205	1included	K562	FXR1
MXE	VARS	ENSG00000204394.8	chr6	-	31749257	31749383	31749467	31749538	31748795	31748900	31749623	31749729	0.10900	0.01039	0.09496	1included	K562	U2AF2
MXE	VARS	ENSG00000204394.8	chr6	-	31750497	31750622	31750872	31750963	31750306	31750410	31751990	31752085	-0.12500	0.00088	0.04093	2included	HepG2	BCCIP
MXE	VARS	ENSG00000204394.8	chr6	-	31750306	31750410	31750497	31750622	31750061	31750220	31750872	31750963	-0.13700	0.00000	0.00000	2included	K562	TARDBP
MXE	VARS	ENSG00000204394.8	chr6	-	31750497	31750622	31750872	31750963	31750306	31750410	31752170	31752279	0.16100	0.00007	0.00370	1included	K562	EFTUD2
MXE	VARS	ENSG00000204394.8	chr6	-	31749165	31749383	31749467	31749538	31748795	31748900	31749623	31749729	-0.14300	0.00000	0.00000	2included	K562	EFTUD2
MXE	VARS	ENSG00000204394.8	chr6	-	31750497	31750622	31750872	31750963	31750306	31750410	31752170	31752279	0.15300	0.00016	0.00542	1included	K562	PRPF8
MXE	VARS	ENSG00000204394.8	chr6	-	31752170	31752279	31752371	31752491	31750872	31750963	31753022	31753104	-0.05500	0.00000	0.00000	2included	K562	PRPF8
MXE	VARS	ENSG00000204394.8	chr6	-	31749165	31749383	31749467	31749538	31748795	31748900	31749623	31749729	-0.22600	0.00000	0.00000	2included	K562	PRPF8
MXE	VARS	ENSG00000204394.8	chr6	-	31750306	31750410	31750497	31750622	31750061	31750220	31750872	31750963	-0.07400	0.00081	0.01977	2included	K562	PRPF8
MXE	VARS	ENSG00000204394.8	chr6	-	31748795	31748900	31749467	31749538	31748646	31748715	31749623	31749729	0.15200	0.00000	0.00031	1included	K562	SUPV3L1
MXE	VARS	ENSG00000204394.8	chr6	-	31748795	31748900	31749257	31749383	31748646	31748715	31749467	31749538	0.12900	0.00006	0.00284	1included	K562	SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VARS

General Information

Functions

Localization

Domains (AlphaFold: VARS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VARS is not avaliable on ENCORE database.

38 proteins are bound to VARS RNA:

eCLIP assay for VARS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VARS is not available on ENCORE database.

125 RBPs can affect the gene expression of VARS :

The Knockdown/knockout RNA-Seq assay for VARS is not available on ENCORE database.

22 RBPs can affect the splicing of VARS :

The Knockdown/knockout RNA-Seq assay for VARS is not avaliable on ENCORE database.