RNF43

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF43	ENSG00000108375.12	4.24	4.48	4.36	ENCSR000AEF
HepG2	RNF43	ENSG00000108375.12	44.85	48.54	46.70	ENCSR985KAT
K562	RNF43	ENSG00000108375.12	1.20	1.41	1.30	ENCSR000AEO

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
RNF43	Ribo-STAMP-293T	shRNA			RNF43-BGRSLV06-33,RNF43-BGRSLV06-34	NT-BGRSLV06-1,NT-BGRSLV06-2	,	Submitted	ENCORE2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF43 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF43 RNA is bound by 35 proteins.

eCLIP assay for RNF43 is not avaliable on ENCORE database.

35 proteins are bound to RNF43 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	56448355	56448422	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.36872	10.98267	HepG2	PRPF8
chr17	56431125	56431203	-	3'-UTR,intron-Distal	3.39660	3.13224	HepG2	ZC3H11A
chr17	56440960	56441014	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.99540	8.19973	HepG2	EFTUD2
chr17	56432086	56432207	-	3'-UTR,intron-Distal,intron-Proximal	3.70803	8.70240	HepG2	UPF1
chr17	56440935	56441035	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.11953	5.22292	HepG2	SF3B4
chr17	56431810	56431862	-	3'-UTR,intron-Distal	3.97505	3.70195	HepG2	UPF1
chr17	56440921	56441027	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.05467	9.86309	HepG2	AQR
chr17	56448360	56448424	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.06852	9.76340	HepG2	AQR
chr17	56448228	56448273	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.26540	5.84640	HepG2	AQR
chr17	56430967	56431024	-	3'-UTR,intron-Distal,intron-Proximal	3.00497	3.40825	HepG2	CSTF2
chr17	56431986	56432086	-	3'-UTR,intron-Distal	4.62876	6.23064	HepG2	UPF1
chr17	56431162	56431219	-	3'-UTR,intron-Distal	3.49679	3.24593	HepG2	XPO5
chr17	56432226	56432251	-	3'-UTR,intron-Distal,intron-Proximal	4.70518	4.67689	HepG2	PPIG
chr17	56493108	56493149	-	5'-UTR,intron-Distal,intron-Proximal	4.45585	4.21087	HepG2	GRWD1
chr17	56494541	56494561	-	5'-UTR,intron-Distal,intron-Proximal	4.14527	3.22067	HepG2	RBM15
chr17	56493149	56493245	-	5'-UTR,intron-Distal,intron-Proximal	3.52207	6.81934	HepG2	GRWD1
chr17	56494795	56494939	-	5'-UTR,intron-Distal,intron-Proximal	3.71793	15.41517	HepG2	NCBP2
chr17	56494367	56494421	-	5'-UTR,intron-Distal,intron-Proximal	3.19298	5.07233	HepG2	RBM15
chr17	56438255	56438281	-	CDS,intron-Distal	4.03872	10.57347	HepG2	PPIG
chr17	56492687	56492808	-	CDS,intron-Distal	4.20804	15.69130	HepG2	GRWD1
chr17	56492808	56492910	-	CDS,intron-Distal	3.39061	6.54912	HepG2	GRWD1
chr17	56492846	56492902	-	CDS,intron-Distal	3.16082	3.48322	HepG2	UPF1
chr17	56438134	56438145	-	CDS,intron-Distal,intron-Proximal	4.11151	7.56654	HepG2	PRPF8
chr17	56440634	56440676	-	CDS,intron-Distal,intron-Proximal	3.94427	12.24499	HepG2	PPIG
chr17	56434999	56435046	-	CDS,intron-Distal	3.70726	6.68223	HepG2	RBM15
chr17	56440593	56440657	-	CDS,intron-Distal,intron-Proximal	5.93427	8.08771	HepG2	EFTUD2
chr17	56439815	56439910	-	CDS,intron-Distal,intron-Proximal	5.50575	10.25009	HepG2	AQR
chr17	56437481	56437512	-	CDS,intron-Distal,intron-Proximal	4.68618	9.68645	HepG2	AQR
chr17	56437590	56437683	-	CDS,intron-Distal,intron-Proximal	4.27604	6.92290	HepG2	AQR
chr17	56438281	56438307	-	CDS,intron-Distal,intron-Proximal	3.38521	9.24355	HepG2	PPIG
chr17	56435270	56435359	-	CDS,intron-Distal	3.61090	3.27226	HepG2	IGF2BP3
chr17	56435046	56435093	-	CDS,intron-Distal	3.71779	4.18590	HepG2	RBM15
chr17	56439962	56440016	-	CDS,intron-Distal,intron-Proximal	3.56565	12.12228	HepG2	BUD13
chr17	56435003	56435045	-	CDS,intron-Distal	3.18477	3.27682	HepG2	LARP4
chr17	56435576	56435633	-	CDS,intron-Distal	3.55600	4.78418	HepG2	EIF3H
chr17	56440577	56440668	-	CDS,intron-Distal,intron-Proximal	3.47695	17.08248	HepG2	PRPF8
chr17	56437509	56437578	-	CDS,intron-Distal,intron-Proximal	3.89082	7.50845	HepG2	GRWD1
chr17	56439909	56439966	-	CDS,intron-Distal	3.01962	15.08334	HepG2	PPIG
chr17	56440742	56440834	-	CDS,intron-Distal,intron-Proximal	3.89217	6.48305	HepG2	EFTUD2
chr17	56436165	56436197	-	CDS,intron-Distal,intron-Proximal	3.15767	6.61645	HepG2	BUD13
chr17	56438243	56438362	-	CDS,intron-Distal,intron-Proximal	3.23070	3.30948	HepG2	PRPF4
chr17	56432321	56432365	-	CDS,intron-Distal	3.81748	9.52799	HepG2	BUD13
chr17	56440748	56440876	-	CDS,intron-Distal,intron-Proximal	5.68157	12.86303	HepG2	AQR
chr17	56437566	56437610	-	CDS,intron-Distal	3.07061	5.00751	HepG2	BCLAF1
chr17	56437584	56437655	-	CDS,intron-Distal,intron-Proximal	3.10120	12.96908	HepG2	BUD13
chr17	56437588	56437624	-	CDS,intron-Distal,intron-Proximal	3.14851	5.34140	HepG2	PRPF8
chr17	56440885	56440921	-	CDS,intron-Distal,intron-Proximal	3.13034	5.80035	HepG2	PPIG
chr17	56438194	56438255	-	CDS,intron-Distal	3.17689	10.35370	HepG2	PPIG
chr17	56438269	56438304	-	CDS,intron-Distal	3.94860	7.17852	HepG2	AQR
chr17	56440709	56440867	-	CDS,intron-Distal,intron-Proximal	3.83007	24.31413	HepG2	PRPF8
chr17	56440735	56440803	-	CDS,intron-Distal,intron-Proximal	3.08091	8.61463	HepG2	BUD13
chr17	56492645	56492724	-	CDS,intron-Distal,intron-Proximal	4.49704	8.96944	HepG2	PRPF8
chr17	56438255	56438362	-	CDS,intron-Distal,intron-Proximal	3.90054	24.78370	HepG2	BUD13
chr17	56438304	56438339	-	CDS,intron-Distal,intron-Proximal	3.74279	7.99229	HepG2	AQR
chr17	56437519	56437590	-	CDS,intron-Distal	4.97866	6.74224	HepG2	AQR
chr17	56440593	56440676	-	CDS,intron-Distal,intron-Proximal	3.56199	7.38298	HepG2	AQR
chr17	56440676	56440697	-	CDS,intron-Distal	3.66964	6.82013	HepG2	PPIG
chr17	56437508	56437605	-	CDS,intron-Distal,intron-Proximal	3.27968	12.40795	HepG2	PPIG
chr17	56483008	56483048	-	intron-Distal	4.60890	61.09027	HepG2	PTBP1
chr17	56471755	56471805	-	intron-Distal	5.63667	11.59253	HepG2	PTBP1
chr17	56468655	56468709	-	intron-Distal	3.55321	3.40641	HepG2	GTF2F1
chr17	56438100	56438134	-	intron-Distal,intron-Proximal	4.54621	12.15723	HepG2	PRPF8
chr17	56433326	56433373	-	intron-Distal	3.74632	4.81278	HepG2	PTBP1
chr17	56433513	56433590	-	intron-Distal	3.98584	9.81425	HepG2	SUGP2
chr17	56437473	56437481	-	intron-Distal,intron-Proximal	5.50398	9.60578	HepG2	AQR
chr17	56443318	56443391	-	intron-Distal	3.52597	4.35402	HepG2	SUGP2
chr17	56486095	56486161	-	intron-Distal	5.00109	6.73862	HepG2	SFPQ
chr17	56471566	56471632	-	intron-Distal	3.07942	8.57535	HepG2	MATR3
chr17	56471559	56471617	-	intron-Distal	4.74837	4.74221	HepG2	PTBP1
chr17	56468563	56468602	-	intron-Distal	3.03596	4.86332	HepG2	SUGP2
chr17	56486181	56486220	-	intron-Distal	3.01566	4.03654	HepG2	SFPQ
chr17	56432366	56432428	-	intron-Distal	3.87951	9.39688	HepG2	SF3B4
chr17	56469385	56469442	-	intron-Distal	4.04292	5.95721	HepG2	MATR3
chr17	56467990	56468064	-	intron-Distal	3.06365	7.46507	HepG2	SUGP2
chr17	56490956	56491025	-	intron-Distal	5.15412	6.43853	HepG2	MATR3
chr17	56433569	56433613	-	intron-Distal	3.34122	13.94531	HepG2	U2AF2
chr17	56432917	56432964	-	intron-Distal	3.91111	11.53546	HepG2	PCBP2
chr17	56489066	56489095	-	intron-Distal	4.08873	7.47563	HepG2	SUGP2
chr17	56487331	56487394	-	intron-Distal	3.63333	4.11430	HepG2	PCBP2
chr17	56490209	56490262	-	intron-Distal	3.07864	8.33053	HepG2	SUGP2
chr17	56438055	56438073	-	intron-Distal,intron-Proximal	4.02202	5.30739	HepG2	BUD13
chr17	56438059	56438111	-	intron-Distal,intron-Proximal	4.34274	5.72723	HepG2	EFTUD2
chr17	56490947	56491024	-	intron-Distal	3.81572	8.49142	HepG2	PTBP1
chr17	56460702	56460779	-	intron-Distal	4.42514	10.46199	HepG2	LIN28B
chr17	56481234	56481332	-	intron-Distal	3.53159	12.63545	HepG2	QKI
chr17	56471902	56472011	-	intron-Distal	3.36207	15.38883	HepG2	SUGP2
chr17	56447150	56447218	-	intron-Distal	3.31261	6.62781	HepG2	QKI
chr17	56471548	56471604	-	intron-Distal	3.32232	3.59771	HepG2	QKI
chr17	56454957	56455033	-	intron-Distal	5.33903	8.70648	HepG2	GTF2F1
chr17	56487295	56487403	-	intron-Distal	4.04293	7.44395	HepG2	KHSRP
chr17	56489418	56489502	-	intron-Distal	3.21109	12.73547	HepG2	MATR3
chr17	56483017	56483085	-	intron-Distal	4.26157	3.18981	K562	PTBP1
chr17	56432788	56432822	-	intron-Distal	5.14381	9.16934	HepG2	PTBP1
chr17	56433506	56433569	-	intron-Distal	3.09422	11.17365	HepG2	U2AF2
chr17	56484466	56484567	-	intron-Distal	4.50318	4.98508	HepG2	ILF3
chr17	56489897	56489963	-	intron-Distal	4.37225	14.87012	HepG2	SUGP2
chr17	56489258	56489332	-	intron-Distal	3.90560	12.66433	HepG2	SUGP2
chr17	56489829	56489879	-	intron-Distal	3.23587	7.69953	HepG2	MATR3
chr17	56492614	56492661	-	intron-Distal,intron-Proximal	4.65711	13.00938	HepG2	TIAL1
chr17	56468650	56468684	-	intron-Distal	3.02636	6.11961	HepG2	SUGP2
chr17	56433746	56433815	-	intron-Distal	3.19443	3.78909	HepG2	U2AF2
chr17	56432839	56432885	-	intron-Distal	3.62418	8.51568	HepG2	PCBP2
chr17	56471906	56472012	-	intron-Distal	3.60402	16.17760	HepG2	MATR3
chr17	56471465	56471521	-	intron-Distal	3.16143	6.05689	HepG2	SUGP2
chr17	56438045	56438102	-	intron-Distal,intron-Proximal	4.82867	7.00609	HepG2	RBM22
chr17	56483048	56483070	-	intron-Distal	5.59829	68.26740	HepG2	PTBP1
chr17	56490262	56490291	-	intron-Distal	5.09159	9.34617	HepG2	SUGP2
chr17	56472199	56472260	-	intron-Distal	3.32421	7.13214	HepG2	SUGP2
chr17	56477499	56477541	-	intron-Distal	3.20733	4.50064	HepG2	SFPQ
chr17	56440793	56440831	-	intron-Distal,intron-Proximal	4.02850	3.82050	HepG2	SF3B4
chr17	56489510	56489540	-	intron-Distal	5.00592	6.79594	HepG2	MATR3
chr17	56432612	56432646	-	intron-Distal	4.01654	3.39864	HepG2	SUGP2
chr17	56487066	56487086	-	intron-Distal	4.21247	3.37208	HepG2	ILF3
chr17	56489632	56489661	-	intron-Distal	4.00858	7.23308	HepG2	SUGP2
chr17	56490714	56490825	-	intron-Distal	3.52877	9.02352	HepG2	MATR3
chr17	56472110	56472168	-	intron-Distal	5.34602	8.07646	HepG2	SUGP2
chr17	56469282	56469383	-	intron-Distal	3.59429	9.07921	HepG2	MATR3
chr17	56447980	56448060	-	intron-Distal	5.43447	14.80234	HepG2	RBFOX2
chr17	56483070	56483091	-	intron-Distal	4.90130	12.38260	HepG2	PTBP1
chr17	56441418	56441512	-	intron-Distal	3.68238	5.28337	HepG2	HNRNPM
chr17	56466064	56466113	-	intron-Distal	3.10066	6.03977	HepG2	MATR3
chr17	56489815	56489882	-	intron-Distal	4.24887	15.68075	HepG2	SUGP2
chr17	56456828	56456893	-	intron-Distal	3.34210	3.63033	HepG2	HNRNPU
chr17	56466245	56466294	-	intron-Distal	3.99131	6.63948	HepG2	MATR3
chr17	56438041	56438100	-	intron-Distal,intron-Proximal	3.16175	10.17395	HepG2	PRPF8
chr17	56489371	56489418	-	intron-Distal	4.93672	7.08112	HepG2	MATR3
chr17	56490854	56490898	-	intron-Distal	3.48253	9.54287	HepG2	SUGP2
chr17	56432732	56432788	-	intron-Distal	4.93094	11.56570	HepG2	PTBP1
chr17	56441294	56441386	-	intron-Distal	4.29780	7.67287	HepG2	MATR3
chr17	56466534	56466580	-	intron-Distal	4.12636	6.63948	HepG2	MATR3
chr17	56489209	56489243	-	intron-Distal	4.95721	8.29733	HepG2	SUGP2
chr17	56489583	56489624	-	intron-Distal	3.34099	8.61881	HepG2	SUGP2
chr17	56466986	56467027	-	intron-Distal	3.00095	4.57938	HepG2	SUGP2
chr17	56439811	56439874	-	intron-Distal,intron-Proximal	3.72324	9.55586	HepG2	EFTUD2
chr17	56439874	56439904	-	intron-Distal,intron-Proximal	4.78788	3.53505	HepG2	EFTUD2
chr17	56489224	56489303	-	intron-Distal	4.48854	8.58056	HepG2	MATR3
chr17	56490291	56490365	-	intron-Distal	3.23863	9.44135	HepG2	SUGP2
chr17	56467459	56467541	-	intron-Distal	3.90561	11.93004	HepG2	MATR3
chr17	56468999	56469072	-	intron-Distal	4.20509	12.76219	HepG2	SUGP2
chr17	56473589	56473641	-	intron-Distal	3.07794	3.63322	HepG2	MATR3
chr17	56432637	56432694	-	intron-Distal	3.00048	3.57598	HepG2	MATR3
chr17	56466034	56466108	-	intron-Distal	3.74464	8.52200	HepG2	SUGP2
chr17	56489963	56490041	-	intron-Distal	3.77833	14.05542	HepG2	SUGP2
chr17	56473087	56473128	-	intron-Distal	3.03322	3.12297	HepG2	SUGP2
chr17	56469296	56469369	-	intron-Distal	3.40489	10.51282	HepG2	SUGP2
chr17	56439862	56439893	-	intron-Distal,intron-Proximal	4.10412	13.40522	HepG2	PRPF8
chr17	56441812	56441863	-	intron-Distal	3.35146	6.54103	HepG2	PCBP2
chr17	56433538	56433606	-	intron-Distal	4.17782	13.25395	HepG2	PTBP1
chr17	56492661	56492666	-	intron-Distal,intron-Proximal	4.94400	7.87674	HepG2	TIAL1
chr17	56471805	56471853	-	intron-Distal	3.66482	4.78196	HepG2	PTBP1
chr17	56473100	56473135	-	intron-Distal	3.80021	5.13840	HepG2	MATR3
chr17	56432853	56432890	-	intron-Distal	3.38624	3.10961	HepG2	MATR3
chr17	56432640	56432699	-	intron-Distal	3.68809	7.92999	HepG2	PTBP1
chr17	56433070	56433146	-	intron-Distal	3.40099	4.61945	HepG2	HNRNPK
chr17	56486994	56487045	-	intron-Distal	3.18195	6.08141	HepG2	ILF3
chr17	56473450	56473525	-	intron-Distal	3.27702	14.25463	HepG2	SUGP2
chr17	56432915	56432972	-	intron-Distal	3.02762	5.07140	HepG2	PTBP1
chr17	56433542	56433602	-	intron-Distal	4.29296	6.29761	HepG2	MATR3
chr17	56437465	56437510	-	intron-Distal,intron-Proximal	4.85774	24.55337	HepG2	PRPF8
chr17	56490711	56490774	-	intron-Distal	3.83770	12.37494	HepG2	SUGP2
chr17	56466613	56466671	-	intron-Distal	3.56213	9.05469	HepG2	SUGP2
chr17	56489449	56489495	-	intron-Distal	3.30669	11.89572	HepG2	SUGP2
chr17	56472679	56472687	-	intron-Distal	3.12229	3.23296	HepG2	SUGP2
chr17	56484463	56484509	-	intron-Distal	4.12582	3.09122	HepG2	PTBP1
chr17	56433761	56433788	-	intron-Distal	4.13066	3.74583	HepG2	PTBP1
chr17	56443411	56443461	-	intron-Distal	4.89932	7.15660	HepG2	HNRNPM
chr17	56489361	56489410	-	intron-Distal	3.00796	7.76766	HepG2	SUGP2
chr17	56473256	56473304	-	intron-Distal	3.79410	7.20487	HepG2	SUGP2
chr17	56438086	56438131	-	intron-Distal,intron-Proximal	4.31401	3.93614	HepG2	AQR
chr17	56439816	56439868	-	intron-Distal,intron-Proximal	4.73156	18.52396	HepG2	BUD13
chr17	56489732	56489786	-	intron-Distal	3.46149	8.99518	HepG2	SUGP2
chr17	56471574	56471642	-	intron-Distal	3.82041	8.83534	HepG2	SUGP2
chr17	56489206	56489318	-	intron-Distal	3.76367	5.37814	HepG2	HNRNPM
chr17	56473368	56473392	-	intron-Distal	4.31919	4.31720	HepG2	MATR3
chr17	56489637	56489691	-	intron-Distal	3.77575	7.91367	HepG2	MATR3
chr17	56466604	56466667	-	intron-Distal	3.55202	9.95199	HepG2	MATR3
chr17	56487045	56487066	-	intron-Distal	3.60127	4.32282	HepG2	ILF3
chr17	56472423	56472468	-	intron-Distal	4.12773	6.48659	HepG2	SUGP2
chr17	56469204	56469282	-	intron-Distal	3.70006	6.29905	HepG2	MATR3
chr17	56472468	56472533	-	intron-Distal	3.40376	8.05798	HepG2	SUGP2
chr17	56467420	56467501	-	intron-Distal	4.05281	15.21255	HepG2	SUGP2
chr17	56432428	56432465	-	intron-Distal	3.12893	3.29220	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RNF43 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF43 is not available on ENCORE database.
141 RBPs can affect the levels of RNF43.

The Knockdown/knockout RNA-Seq assay for RNF43 is not available on ENCORE database.

141 RBPs can affect the gene expression of RNF43 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF43	ENSG00000108375.8	5455.85950	2345.13300	1.21800	84.00730	81.88950	HepG2	ACO1
RNF43	ENSG00000108375.8	3124.67540	2356.11880	0.40720	7.96250	6.74410	HepG2	AKAP8L
RNF43	ENSG00000108375.8	3337.98330	1884.42890	0.82470	12.51390	10.94420	HepG2	ASCC1
RNF43	ENSG00000108375.8	3000.20110	4198.37490	-0.48480	6.14250	5.29130	HepG2	BOP1
RNF43	ENSG00000108375.8	3411.47150	2830.88880	0.26900	2.47820	1.31470	HepG2	BUD13
RNF43	ENSG00000108375.8	2640.75030	3589.98490	-0.44300	6.86710	5.72390	HepG2	CALR
RNF43	ENSG00000108375.8	6820.46840	5344.95390	0.35160	2.22630	1.35980	HepG2	CCAR1
RNF43	ENSG00000108375.8	3602.15860	1790.34630	1.00850	19.23930	17.41770	HepG2	CIRBP
RNF43	ENSG00000108375.8	4363.73370	2344.58450	0.89610	50.07680	48.08080	HepG2	CKAP4
RNF43	ENSG00000108375.8	2074.81810	3854.39640	-0.89350	16.73280	15.20780	HepG2	CPSF6
RNF43	ENSG00000108375.8	5683.52430	3111.68310	0.86900	21.93510	19.24310	HepG2	CPSF7
RNF43	ENSG00000108375.8	3185.71030	2723.14950	0.22620	2.43530	1.48310	HepG2	YBX3
RNF43	ENSG00000108375.8	2349.31660	1593.05780	0.56030	6.43340	4.89420	HepG2	CSTF2
RNF43	ENSG00000108375.8	7207.88160	3369.67940	1.09690	55.18630	53.07390	HepG2	CELF1
RNF43	ENSG00000108375.8	2055.30250	3623.40300	-0.81800	39.71420	37.56430	HepG2	DAZAP1
RNF43	ENSG00000108375.8	4298.35250	2726.94080	0.65640	10.10760	8.12320	HepG2	DDX1
RNF43	ENSG00000108375.8	1517.40700	1920.97050	-0.34020	2.76860	1.37830	HepG2	DDX28
RNF43	ENSG00000108375.8	2705.53460	2181.63200	0.31040	2.14030	1.58350	HepG2	DDX3X
RNF43	ENSG00000108375.8	5446.61040	2536.15620	1.10260	18.47190	16.73700	HepG2	DDX55
RNF43	ENSG00000108375.8	2170.54020	3000.66680	-0.46720	5.05400	3.71850	HepG2	DDX5
RNF43	ENSG00000108375.8	3010.09620	1874.20950	0.68340	7.44400	6.47550	HepG2	DDX6
RNF43	ENSG00000108375.8	1832.27320	2578.99500	-0.49320	6.08700	4.66950	HepG2	DHX30
RNF43	ENSG00000108375.8	1821.21970	2673.91710	-0.55400	11.40730	10.05780	HepG2	DNAJC21
RNF43	ENSG00000108375.8	3405.63300	2650.32250	0.36170	8.80880	7.72350	HepG2	DNAJC2
RNF43	ENSG00000108375.8	3795.66140	2655.91090	0.51500	5.93460	4.62770	HepG2	EEF2
RNF43	ENSG00000108375.8	2844.90390	2214.10490	0.36160	3.12430	1.94800	HepG2	EFTUD2
RNF43	ENSG00000108375.8	3690.51270	2866.24010	0.36460	4.63880	3.14460	HepG2	EIF2S2
RNF43	ENSG00000108375.8	4439.40430	2156.01140	1.04190	20.20990	18.03980	HepG2	EIF3D
RNF43	ENSG00000108375.8	2493.72010	1990.89110	0.32480	2.02140	1.47240	HepG2	EIF4A3
RNF43	ENSG00000108375.8	3254.39450	1938.54240	0.74730	7.05010	5.97990	HepG2	EIF4B
RNF43	ENSG00000108375.8	2412.63970	3574.56270	-0.56720	15.62350	13.96750	HepG2	EIF4G1
RNF43	ENSG00000108375.8	2166.68090	3424.22870	-0.66030	9.90360	8.40850	HepG2	EIF4G2
RNF43	ENSG00000108375.8	2342.60570	1926.93150	0.28170	2.85100	1.66380	HepG2	FAM120A
RNF43	ENSG00000108375.8	10131.04520	3814.92690	1.40900	34.85990	32.73300	HepG2	FIP1L1
RNF43	ENSG00000108375.8	2140.71490	1618.80360	0.40310	3.03240	2.21220	HepG2	FUBP3
RNF43	ENSG00000108375.8	4824.87760	2836.93560	0.76610	7.30660	5.56010	HepG2	FUS
RNF43	ENSG00000108375.8	4177.29780	2008.93260	1.05600	20.42080	18.72270	HepG2	FXR1
RNF43	ENSG00000108375.8	2318.27430	1863.47070	0.31500	2.05440	1.47790	HepG2	G3BP1
RNF43	ENSG00000108375.8	2788.76730	1978.45530	0.49520	5.05120	3.83660	HepG2	G3BP2
RNF43	ENSG00000108375.8	2689.28750	1919.65080	0.48630	5.00280	3.79820	HepG2	GEMIN5
RNF43	ENSG00000108375.8	3088.15800	2220.13920	0.47600	4.35040	3.06650	HepG2	GNB2L1
RNF43	ENSG00000108375.8	3705.52860	2238.90710	0.72680	24.74520	22.33180	HepG2	HDGF
RNF43	ENSG00000108375.8	4016.59570	2721.04450	0.56170	3.25470	1.73950	HepG2	HLTF
RNF43	ENSG00000108375.8	3679.55680	2699.53410	0.44670	5.66250	4.78150	HepG2	HNRNPA1
RNF43	ENSG00000108375.8	6708.70740	3329.92900	1.01040	51.14800	48.18220	HepG2	HNRNPA2B1
RNF43	ENSG00000108375.8	2343.60750	3002.73830	-0.35750	3.56390	2.78480	HepG2	HNRNPC
RNF43	ENSG00000108375.8	2956.70370	4407.56290	-0.57600	16.24100	14.69560	HepG2	HNRNPF
RNF43	ENSG00000108375.8	4406.42630	1887.18720	1.22330	31.55070	29.46390	HepG2	HNRNPK
RNF43	ENSG00000108375.8	4267.50770	3300.69450	0.37050	9.97520	8.77040	HepG2	HNRNPL
RNF43	ENSG00000108375.8	2496.38650	4169.80480	-0.74010	11.34700	10.17840	HepG2	HNRNPLL
RNF43	ENSG00000108375.8	3940.82550	2632.38790	0.58200	10.39160	8.76270	HepG2	HNRNPM
RNF43	ENSG00000108375.8	2398.46780	2982.88550	-0.31460	3.93020	3.21910	HepG2	HNRNPU
RNF43	ENSG00000108375.8	2551.25190	4340.21360	-0.76660	18.31090	16.63870	HepG2	IGF2BP1
RNF43	ENSG00000108375.8	3091.09500	1777.72330	0.79800	3.55670	2.44160	HepG2	IGF2BP3
RNF43	ENSG00000108375.8	3833.96110	3046.91790	0.33140	8.51390	7.29640	HepG2	ILF2
RNF43	ENSG00000108375.8	1592.36370	2295.60910	-0.52770	4.13280	2.62490	HepG2	KHDRBS1
RNF43	ENSG00000108375.8	3636.75650	1905.25210	0.93260	11.53160	9.40340	HepG2	KHSRP
RNF43	ENSG00000108375.8	2707.84010	2143.72140	0.33690	7.07100	5.49300	HepG2	KIF1C
RNF43	ENSG00000108375.8	8749.33390	5643.13710	0.63260	6.24910	4.99230	HepG2	LARP4
RNF43	ENSG00000108375.8	3698.09160	2175.35700	0.76540	13.61230	11.28450	HepG2	LARP7
RNF43	ENSG00000108375.8	2601.47890	2009.63490	0.37230	2.87270	2.20510	HepG2	MAGOH
RNF43	ENSG00000108375.8	2772.41680	1841.71670	0.59000	6.75240	4.34340	HepG2	MARK2
RNF43	ENSG00000108375.8	3738.86540	2020.84890	0.88750	12.58850	11.31180	HepG2	MATR3
RNF43	ENSG00000108375.8	4862.78120	2256.46310	1.10760	13.56770	11.40050	HepG2	METAP2
RNF43	ENSG00000108375.8	4897.92070	3087.95280	0.66540	13.32830	11.69670	HepG2	MSI2
RNF43	ENSG00000108375.8	2952.93360	4252.30270	-0.52610	3.43930	2.35080	HepG2	MTPAP
RNF43	ENSG00000108375.8	3803.44850	2592.86980	0.55270	8.62000	6.53830	HepG2	NAA15
RNF43	ENSG00000108375.8	3654.76840	2068.42390	0.82110	11.75790	10.49460	HepG2	NCBP2
RNF43	ENSG00000108375.8	5312.85930	3592.94990	0.56420	12.04330	10.50200	HepG2	NOL12
RNF43	ENSG00000108375.8	3362.42080	2329.24460	0.52950	2.37480	1.36770	HepG2	NONO
RNF43	ENSG00000108375.8	4688.90580	2952.53890	0.66720	22.34920	20.39370	HepG2	PARN
RNF43	ENSG00000108375.8	2909.14410	1932.51940	0.59000	15.71700	14.46200	HepG2	PCBP1
RNF43	ENSG00000108375.8	3843.55850	2685.41450	0.51720	3.41080	2.26150	HepG2	PCBP2
RNF43	ENSG00000108375.8	2401.59970	1782.96710	0.42960	6.07660	4.29270	HepG2	PKM
RNF43	ENSG00000108375.8	3397.40400	2660.49460	0.35260	5.38300	4.38410	HepG2	PPIL4
RNF43	ENSG00000108375.8	3903.74430	3036.14520	0.36250	6.79040	5.64000	HepG2	PRPF4
RNF43	ENSG00000108375.8	2707.28020	1956.02290	0.46880	4.14830	3.18230	HepG2	PRPF8
RNF43	ENSG00000108375.8	4286.78870	1966.44400	1.12420	57.20620	55.43110	HepG2	PTBP1
RNF43	ENSG00000108375.8	2085.60490	3429.73770	-0.71760	13.61490	12.42960	HepG2	PUF60
RNF43	ENSG00000108375.8	5726.99720	3640.76250	0.65340	33.26140	31.66910	HepG2	PUM1
RNF43	ENSG00000108375.8	2457.19150	3638.13760	-0.56620	10.95270	9.66700	HepG2	PUM2
RNF43	ENSG00000108375.8	3804.55060	2388.66440	0.67140	24.86140	23.35730	HepG2	PUS1
RNF43	ENSG00000108375.8	5602.59700	2591.01100	1.11250	10.70280	9.38060	HepG2	RAVER1
RNF43	ENSG00000108375.8	5369.11750	3509.13830	0.61350	13.70160	12.01780	HepG2	RBM15
RNF43	ENSG00000108375.8	2734.28350	1932.80890	0.50040	7.07710	6.03800	HepG2	RBM25
RNF43	ENSG00000108375.8	3587.14470	2623.17570	0.45140	4.38690	3.11760	HepG2	RBM27
RNF43	ENSG00000108375.8	3705.10450	2130.13910	0.79850	10.92980	8.89210	HepG2	RCC2
RNF43	ENSG00000108375.8	4030.55370	2188.43580	0.88100	35.27400	33.80650	HepG2	NELFE
RNF43	ENSG00000108375.8	3496.81420	2038.28050	0.77860	27.84690	26.25240	HepG2	RECQL
RNF43	ENSG00000108375.8	2399.21800	4747.68890	-0.98470	22.85780	21.28660	HepG2	RPLP0
RNF43	ENSG00000108375.8	1382.61300	2546.03210	-0.88090	8.07760	6.53540	HepG2	RPS10
RNF43	ENSG00000108375.8	4219.90100	2097.89880	1.00820	27.68580	26.07490	HepG2	RPS19
RNF43	ENSG00000108375.8	1483.33020	2419.10230	-0.70560	6.32210	5.11720	HepG2	RPS3A
RNF43	ENSG00000108375.8	3574.57600	2469.54740	0.53340	5.88870	4.31200	HepG2	RPS5
RNF43	ENSG00000108375.8	2953.96750	1934.87060	0.61030	6.00120	4.89100	HepG2	RRP9
RNF43	ENSG00000108375.8	2025.99210	2656.38810	-0.39080	8.33440	7.30580	HepG2	SAFB2
RNF43	ENSG00000108375.8	4490.94620	2418.74350	0.89270	2.73160	1.39050	HepG2	SF1
RNF43	ENSG00000108375.8	5396.90410	2756.15990	0.96940	8.16800	6.96390	HepG2	SF3A3
RNF43	ENSG00000108375.8	2446.58650	4127.37710	-0.75450	13.36710	11.93680	HepG2	SF3B1
RNF43	ENSG00000108375.8	3356.83180	2047.26250	0.71330	23.06860	21.64240	HepG2	SF3B4
RNF43	ENSG00000108375.8	4551.02480	2347.38120	0.95500	2.83030	1.36150	HepG2	SFPQ
RNF43	ENSG00000108375.8	4503.51370	3097.79190	0.53970	22.03480	20.49100	HepG2	SMN1
RNF43	ENSG00000108375.8	4266.34120	2136.92310	0.99740	50.86180	49.39560	HepG2	SRSF1
RNF43	ENSG00000108375.8	2613.24440	4330.20720	-0.72860	25.67010	23.96880	HepG2	SRSF7
RNF43	ENSG00000108375.8	3324.90730	1738.52170	0.93540	41.99430	40.34640	HepG2	SRSF9
RNF43	ENSG00000108375.8	3655.98020	2754.06660	0.40860	3.30450	1.90900	HepG2	SSRP1
RNF43	ENSG00000108375.8	1705.55450	2524.58350	-0.56580	5.94050	5.00660	HepG2	SUPV3L1
RNF43	ENSG00000108375.8	2622.73570	1920.81720	0.44930	7.88210	7.01410	HepG2	TAF15
RNF43	ENSG00000108375.8	2592.77290	4063.83650	-0.64830	9.90110	8.65430	HepG2	TARDBP
RNF43	ENSG00000108375.8	3230.37600	1692.06620	0.93280	13.86660	11.98150	HepG2	TFIP11
RNF43	ENSG00000108375.8	2347.00890	1764.89780	0.41110	5.11210	3.98750	HepG2	TIA1
RNF43	ENSG00000108375.8	1997.86520	2898.40940	-0.53680	9.16020	8.34330	HepG2	TIAL1
RNF43	ENSG00000108375.8	3466.65500	2924.34190	0.24530	3.72050	3.08770	HepG2	TRIM56
RNF43	ENSG00000108375.8	4599.63450	2514.46330	0.87120	2.62800	1.66680	HepG2	U2AF2
RNF43	ENSG00000108375.8	3105.87120	2444.28220	0.34550	6.63450	5.62880	HepG2	UPF1
RNF43	ENSG00000108375.8	6072.48360	2359.87410	1.36350	101.31740	98.55470	HepG2	UTP3
RNF43	ENSG00000108375.8	1263.79840	2166.84140	-0.77780	7.11810	5.36570	HepG2	XPO5
RNF43	ENSG00000108375.8	3739.00240	2849.89060	0.39160	2.26780	1.31090	HepG2	XRCC6
RNF43	ENSG00000108375.8	1569.67840	2996.29700	-0.93270	44.27760	42.26260	HepG2	ZC3H8
RNF43	ENSG00000108375.8	81.13590	143.00940	-0.81770	2.93920	1.71710	K562	AARS
RNF43	ENSG00000108375.8	144.82380	265.52840	-0.87460	5.17640	3.49350	K562	ABCF1
RNF43	ENSG00000108375.8	284.43150	213.57210	0.41330	2.06490	1.56130	K562	AGGF1
RNF43	ENSG00000108375.8	490.67430	222.23320	1.14260	8.77240	7.53810	K562	AKAP8L
RNF43	ENSG00000108375.8	190.20890	294.08030	-0.62860	3.28150	1.92840	K562	APOBEC3C
RNF43	ENSG00000108375.8	128.70350	206.76330	-0.68390	2.71030	2.12690	K562	AQR
RNF43	ENSG00000108375.8	325.08060	135.96050	1.25750	4.11890	3.05140	K562	BOP1
RNF43	ENSG00000108375.8	253.96780	147.53400	0.78350	4.56430	2.91390	K562	CIRBP
RNF43	ENSG00000108375.8	442.55920	290.21290	0.60870	2.65510	1.62040	K562	CNOT7
RNF43	ENSG00000108375.8	187.03340	300.05790	-0.68190	4.41960	3.00120	K562	CPEB4
RNF43	ENSG00000108375.8	213.53750	144.57800	0.56250	2.46500	1.72130	K562	CPSF6
RNF43	ENSG00000108375.8	191.18410	409.77070	-1.09990	10.66620	8.81930	K562	CELF1
RNF43	ENSG00000108375.8	145.39890	250.57870	-0.78520	4.46830	2.58450	K562	DDX19B
RNF43	ENSG00000108375.8	201.46100	133.54100	0.59310	2.67760	1.65110	K562	DDX3X
RNF43	ENSG00000108375.8	194.08590	106.96960	0.85940	3.67080	2.16690	K562	EEF2
RNF43	ENSG00000108375.8	248.86530	110.65650	1.16920	7.09950	5.32650	K562	EIF3D
RNF43	ENSG00000108375.8	131.64160	81.16860	0.69750	2.25480	1.53100	K562	EIF3G
RNF43	ENSG00000108375.8	91.01060	139.51740	-0.61630	2.12390	1.40040	K562	EIF4A3
RNF43	ENSG00000108375.8	71.17100	125.64290	-0.82000	3.33580	2.04220	K562	EIF4B
RNF43	ENSG00000108375.8	79.09610	135.83150	-0.78010	2.64580	1.54810	K562	FKBP4
RNF43	ENSG00000108375.8	213.62580	147.07950	0.53840	2.04260	1.30380	K562	FMR1
RNF43	ENSG00000108375.8	216.68100	124.65220	0.79760	3.84640	2.75310	K562	FTO
RNF43	ENSG00000108375.8	89.95110	145.09220	-0.68980	2.63250	2.03960	K562	FXR1
RNF43	ENSG00000108375.8	127.23030	228.21610	-0.84300	5.22380	3.68560	K562	GLRX3
RNF43	ENSG00000108375.8	116.74010	215.68010	-0.88560	4.52490	3.56120	K562	GRSF1
RNF43	ENSG00000108375.8	120.35430	181.28460	-0.59100	2.46800	1.45480	K562	HNRNPA1
RNF43	ENSG00000108375.8	307.47280	181.84340	0.75770	2.70580	1.50670	K562	HNRNPA2B1
RNF43	ENSG00000108375.8	94.33490	156.51410	-0.73040	2.66900	2.08090	K562	HNRNPC
RNF43	ENSG00000108375.8	188.07010	280.60350	-0.57730	3.16530	2.02830	K562	HNRNPL
RNF43	ENSG00000108375.8	153.99480	258.79240	-0.74890	3.99900	3.04720	K562	HSPD1
RNF43	ENSG00000108375.8	351.17700	235.83870	0.57430	3.23160	2.33380	K562	KIF1C
RNF43	ENSG00000108375.8	83.39940	144.66820	-0.79460	3.47070	2.52330	K562	MAGOH
RNF43	ENSG00000108375.8	148.40140	239.94070	-0.69320	4.12090	3.15130	K562	MTPAP
RNF43	ENSG00000108375.8	240.53000	364.54210	-0.59990	3.34440	1.68360	K562	NOL12
RNF43	ENSG00000108375.8	94.98570	175.19110	-0.88310	3.87390	2.88980	K562	PCBP3
RNF43	ENSG00000108375.8	178.58910	342.45140	-0.93930	7.14970	5.01410	K562	PNPT1
RNF43	ENSG00000108375.8	82.15020	134.37200	-0.70990	2.56640	1.79810	K562	POLR2G
RNF43	ENSG00000108375.8	265.07180	363.63290	-0.45610	2.31430	1.56800	K562	PUF60
RNF43	ENSG00000108375.8	262.30360	386.76360	-0.56020	3.41270	2.22030	K562	PUM1
RNF43	ENSG00000108375.8	450.97270	220.38160	1.03290	9.68490	8.71810	K562	PUS1
RNF43	ENSG00000108375.8	315.42500	214.73930	0.55460	3.37010	2.72530	K562	RBM15
RNF43	ENSG00000108375.8	86.85210	134.80970	-0.63430	2.21580	1.46720	K562	RBM22
RNF43	ENSG00000108375.8	209.45000	128.01090	0.71020	3.54610	2.42530	K562	RCC2
RNF43	ENSG00000108375.8	83.29000	141.85620	-0.76820	2.97540	1.83900	K562	NELFE
RNF43	ENSG00000108375.8	67.81640	113.86590	-0.74760	2.71410	1.86780	K562	SF3B4
RNF43	ENSG00000108375.8	103.72170	269.51720	-1.37770	13.31340	11.46570	K562	SRPK2
RNF43	ENSG00000108375.8	85.93170	134.78630	-0.64940	2.27760	1.53170	K562	SYNCRIP
RNF43	ENSG00000108375.8	88.01600	139.45640	-0.66400	2.30800	1.65900	K562	TARDBP
RNF43	ENSG00000108375.8	148.73900	259.66580	-0.80390	2.91010	1.67490	K562	UTP3
RNF43	ENSG00000108375.8	131.88120	245.01120	-0.89360	5.58630	3.74690	K562	WRN
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF43 is not available on ENCORE database.

3 RBPs can affect the splicing of RNF43 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RNF43	ENSG00000108375.8	chr17	-	56437509	56437612	56434828	56436184	56438143	56438305	0.12500	0.00052	0.00813	included	HepG2	U2AF2
SE	RNF43	ENSG00000108375.8	chr17	-	56437509	56437612	56434828	56436184	56438143	56438305	0.12500	0.00159	0.06325	included	HepG2	SFPQ
A3SS	RNF43	ENSG00000108375.8	chr17	-	56437509	56437646	56437509	56437612	56438143	56438305	0.09300	0.00060	0.05471	longer	HepG2	RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF43

General Information

Functions

Localization

Domains (AlphaFold: RNF43)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF43 is not avaliable on ENCORE database.

35 proteins are bound to RNF43 RNA:

eCLIP assay for RNF43 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF43 is not available on ENCORE database.

141 RBPs can affect the gene expression of RNF43 :

The Knockdown/knockout RNA-Seq assay for RNF43 is not available on ENCORE database.

3 RBPs can affect the splicing of RNF43 :

The Knockdown/knockout RNA-Seq assay for RNF43 is not avaliable on ENCORE database.