PNRC1

General Information

Gene Name       : PNRC1
Gene ID             : ENSG00000146278.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PNRC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PNRC1ENSG00000146278.1025.6920.7123.20ENCSR000AEF
HepG2PNRC1ENSG00000146278.107.9817.8312.90ENCSR985KAT
K562PNRC1ENSG00000146278.104.754.344.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PNRC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PNRC1 RNA is bound by 21 proteins.  







eCLIP assay for PNRC1 is not avaliable on ENCORE database.





21 proteins are bound to PNRC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr68979394289794039+3'-UTR5.151747.84269K562IGF2BP1
chr68979407689794134+3'-UTR6.3935316.82739HepG2FUBP3
chr68979420489794293+3'-UTR3.222685.32190HepG2FUBP3
chr68979420289794280+3'-UTR4.7572826.92085K562PUM2
chr68979413489794175+3'-UTR7.0834326.17678HepG2FUBP3
chr68979403389794149+3'-UTR6.96958400.00000K562PUM2
chr68979415989794202+3'-UTR5.4402828.30374K562PUM2
chr68979347189793540+3'-UTR,CDS,intron-Proximal3.656347.66738HepG2G3BP1
chr68979424589794299+3'-UTR3.057853.68829K562YBX3
chr68979417589794204+3'-UTR6.3901817.57236HepG2FUBP3
chr68979067689790726+5'-UTR,CDS,intron-Proximal3.821307.95222HepG2PCBP2
chr68979172589791798+5'-UTR,intron-Distal3.437793.50245K562HNRNPM
chr68979168289791716+5'-UTR,intron-Distal3.377134.97523HepG2HNRNPM
chr68979069189790779+5'-UTR,CDS,intron-Proximal3.882284.97175K562IGF2BP2
chr68979155389791636+5'-UTR,intron-Distal3.022696.52125HepG2CSTF2T
chr68979155289791619+5'-UTR,intron-Distal3.323845.12435HepG2PRPF4
chr68979068789790829+5'-UTR,CDS,intron-Distal,intron-Proximal5.8852313.94358K562PCBP1
chr68979183989791912+5'-UTR,intron-Distal3.998924.61500HepG2HNRNPM
chr68979155289791624+5'-UTR,intron-Distal5.168656.00387HepG2EXOSC5
chr68979067389790782+5'-UTR,CDS,intron-Proximal3.767489.88696HepG2RBM15
chr68979167589791731+5'-UTR,intron-Distal3.657775.81451K562CSTF2T
chr68979157189791622+5'-UTR,intron-Distal3.409604.48425K562CSTF2T
chr68979068789790757+5'-UTR,CDS,intron-Proximal3.986336.28172K562RBM15
chr68979055789790611+5'-UTR3.022473.29537HepG2IGF2BP3
chr68979173189791784+5'-UTR,intron-Distal3.165253.73797K562CSTF2T
chr68979060689790662+5'-UTR,CDS3.346823.47096K562PCBP1
chr68979171689791803+5'-UTR,intron-Distal4.9178213.41842HepG2HNRNPM
chr68979114589791212+CDS,intron-Distal,intron-Proximal5.382346.74224HepG2AQR
chr68979078889790852+CDS,intron-Distal,intron-Proximal4.847235.01757K562IGF2BP2
chr68979351389793630+CDS3.605314.85120HepG2IGF2BP1
chr68979072689790779+CDS,intron-Proximal4.4317511.59957HepG2PCBP2
chr68979351289793671+CDS5.782349.41982K562IGF2BP1
chr68979094689791013+CDS,intron-Distal5.210145.13875K562DDX6
chr68979091289790972+CDS,intron-Distal3.277257.56571HepG2DDX6
chr68979077989790856+CDS,intron-Distal,intron-Proximal4.110998.29139HepG2PCBP2
chr68979126689791317+intron-Distal3.406244.66813HepG2RBM15
chr68979147889791534+intron-Distal3.509483.14777HepG2GTF2F1
chr68979127789791380+intron-Distal3.260605.21695HepG2PRPF4
chr68979131489791374+intron-Distal3.370735.25366HepG2FAM120A
chr68979145689791544+intron-Distal3.8294411.66465HepG2CSTF2T
chr68979272989792800+intron-Distal3.347343.85440HepG2HNRNPC
chr68979142789791515+intron-Distal5.349937.77818HepG2EXOSC5
chr68979131789791380+intron-Distal4.265339.81366HepG2CSTF2T
chr68979144989791551+intron-Distal3.116616.36915HepG2PRPF4
chr68979147089791534+intron-Distal3.200744.11052HepG2XRN2
chr68979144889791532+intron-Distal4.495604.50934HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PNRC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PNRC1 is not available on ENCORE database.

  • 134 RBPs can affect the levels of PNRC1.  








The Knockdown/knockout RNA-Seq assay for PNRC1 is not available on ENCORE database.





134 RBPs can affect the gene expression of PNRC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PNRC1ENSG00000146278.101703.587501437.664300.244702.945902.32090HepG2ACO1
PNRC1ENSG00000146278.101723.081602607.54110-0.597705.646104.91790HepG2AKAP1
PNRC1ENSG00000146278.102333.959801558.771000.5823013.7826012.45840HepG2AUH
PNRC1ENSG00000146278.101508.119701159.403500.379303.240102.59890HepG2BOP1
PNRC1ENSG00000146278.102086.842201665.446300.325303.457502.60850HepG2CALR
PNRC1ENSG00000146278.101606.163602394.33120-0.576004.652103.37420HepG2CCAR1
PNRC1ENSG00000146278.101687.122701437.338100.231102.864802.19160HepG2CKAP4
PNRC1ENSG00000146278.101427.517202011.77240-0.495002.759001.99510HepG2CNOT7
PNRC1ENSG00000146278.10375.83540571.07320-0.603604.229902.92960HepG2CSTF2
PNRC1ENSG00000146278.101343.88670969.760800.470602.914401.51110HepG2CSTF2T
PNRC1ENSG00000146278.101070.100901329.62720-0.313304.150403.15280HepG2DDX19B
PNRC1ENSG00000146278.10802.479901044.88580-0.380802.998702.29520HepG2DDX21
PNRC1ENSG00000146278.101650.566702497.64760-0.597606.509505.59110HepG2DDX3X
PNRC1ENSG00000146278.103472.917802145.953600.694407.658106.67810HepG2DDX6
PNRC1ENSG00000146278.101634.656101375.451600.249001.878101.30370HepG2DKC1
PNRC1ENSG00000146278.10659.277601292.83310-0.9716013.6000011.79640HepG2EEF2
PNRC1ENSG00000146278.10768.752301077.75850-0.487404.032702.68960HepG2EFTUD2
PNRC1ENSG00000146278.101505.30510962.233000.645503.944802.61060HepG2AGO1
PNRC1ENSG00000146278.101246.752802062.53780-0.726208.952207.92490HepG2EIF2S1
PNRC1ENSG00000146278.10942.959301337.05100-0.503805.900204.24290HepG2EIF2S2
PNRC1ENSG00000146278.10693.807501049.48560-0.597105.127603.92390HepG2EIF3D
PNRC1ENSG00000146278.101294.517401897.55950-0.551703.398901.44120HepG2EIF3H
PNRC1ENSG00000146278.101063.880502279.14380-1.0992016.6420015.08090HepG2EIF4A3
PNRC1ENSG00000146278.101356.454602219.45360-0.710406.147305.15180HepG2EIF4B
PNRC1ENSG00000146278.102795.800001893.340400.5622012.6168011.08670HepG2EIF4G1
PNRC1ENSG00000146278.101366.822701789.63920-0.388805.587704.78260HepG2ETF1
PNRC1ENSG00000146278.101027.21080756.476000.441303.418702.01400HepG2FKBP4
PNRC1ENSG00000146278.10787.981201359.38580-0.7867011.8025010.23590HepG2FUBP3
PNRC1ENSG00000146278.10944.301201373.16380-0.540203.472902.22010HepG2FUS
PNRC1ENSG00000146278.101172.327802300.17460-0.9724015.5783014.07770HepG2FXR1
PNRC1ENSG00000146278.101361.775102133.42620-0.647706.892605.86180HepG2G3BP1
PNRC1ENSG00000146278.101335.359002265.32750-0.7625010.520208.78490HepG2G3BP2
PNRC1ENSG00000146278.10481.06430934.42940-0.9579012.2015010.40580HepG2GEMIN5
PNRC1ENSG00000146278.101341.192601862.29140-0.473602.815301.69470HepG2GRSF1
PNRC1ENSG00000146278.10845.473601289.54490-0.609007.248806.27650HepG2HNRNPA1
PNRC1ENSG00000146278.101350.276601763.83370-0.385504.749003.57560HepG2HNRNPA2B1
PNRC1ENSG00000146278.101124.459901742.58080-0.632004.947002.92470HepG2HNRNPD
PNRC1ENSG00000146278.101577.472202161.04140-0.454104.583403.70350HepG2HNRNPK
PNRC1ENSG00000146278.101517.369001748.51600-0.204602.300001.67700HepG2HNRNPL
PNRC1ENSG00000146278.10841.726601227.95160-0.544806.386505.02100HepG2HNRNPM
PNRC1ENSG00000146278.101164.759601424.84480-0.290802.863002.24700HepG2HNRNPU
PNRC1ENSG00000146278.101459.196002025.49330-0.473103.046701.74840HepG2HSPD1
PNRC1ENSG00000146278.101501.049502168.46620-0.530705.410504.49380HepG2IGF2BP2
PNRC1ENSG00000146278.101148.564901455.44150-0.341603.567402.74480HepG2ILF2
PNRC1ENSG00000146278.101421.136201961.23160-0.464702.761301.44570HepG2ILF3
PNRC1ENSG00000146278.101129.413901916.80440-0.763107.751705.66900HepG2KHDRBS1
PNRC1ENSG00000146278.101497.531002181.32130-0.542604.183802.92900HepG2KHSRP
PNRC1ENSG00000146278.101814.005202528.04850-0.478803.483102.55140HepG2LARP4
PNRC1ENSG00000146278.101292.155002300.98030-0.8325011.4626010.16210HepG2MAGOH
PNRC1ENSG00000146278.10686.83360947.94670-0.464803.367001.59850HepG2MARK2
PNRC1ENSG00000146278.10795.637202313.75880-1.5401031.1404029.20150HepG2MATR3
PNRC1ENSG00000146278.10711.076401440.36870-1.0184019.6978017.79420HepG2MSI2
PNRC1ENSG00000146278.101837.151302368.17960-0.366302.705302.07880HepG2NCBP2
PNRC1ENSG00000146278.101354.412901919.19790-0.502803.245901.69270HepG2NKRF
PNRC1ENSG00000146278.101463.481401903.25360-0.379103.695202.81260HepG2NOL12
PNRC1ENSG00000146278.101392.030301020.981900.447103.982403.08960HepG2NSUN2
PNRC1ENSG00000146278.10452.40800784.55800-0.794304.642502.60070HepG2PA2G4
PNRC1ENSG00000146278.101050.516701410.42350-0.425004.078103.07180HepG2PARN
PNRC1ENSG00000146278.101774.682901299.924800.449002.496201.51030HepG2PCBP2
PNRC1ENSG00000146278.10522.16470867.89970-0.733009.841507.70030HepG2PKM
PNRC1ENSG00000146278.101490.819801058.444200.494108.002506.77530HepG2PRPF4
PNRC1ENSG00000146278.101228.900501816.73760-0.564007.740806.81160HepG2PUF60
PNRC1ENSG00000146278.101812.806801464.352400.307904.442503.69750HepG2PUS1
PNRC1ENSG00000146278.102990.920802200.133300.442906.474405.23030HepG2RBM15
PNRC1ENSG00000146278.102207.049901495.815200.5611010.726409.85240HepG2RBM22
PNRC1ENSG00000146278.101868.389902320.51780-0.312704.227703.58440HepG2NELFE
PNRC1ENSG00000146278.101554.929202161.37500-0.475108.962407.94810HepG2RECQL
PNRC1ENSG00000146278.10773.581701021.20640-0.400603.347902.67990HepG2RPS19
PNRC1ENSG00000146278.101571.093202019.99870-0.362602.010401.32880HepG2RPS3A
PNRC1ENSG00000146278.10931.69920693.725700.425402.938002.13030HepG2RRP9
PNRC1ENSG00000146278.10786.191301268.92080-0.6906010.467709.33860HepG2SAFB2
PNRC1ENSG00000146278.101271.349501879.57380-0.564003.696102.91300HepG2SF3A3
PNRC1ENSG00000146278.101847.584501139.691900.696909.517808.28540HepG2SF3B1
PNRC1ENSG00000146278.101448.758802170.77350-0.5834012.9100011.78020HepG2SF3B4
PNRC1ENSG00000146278.101427.060801741.76490-0.287503.651602.86420HepG2SLBP
PNRC1ENSG00000146278.101022.832201479.83260-0.532906.747705.81190HepG2SMN1
PNRC1ENSG00000146278.102318.036901268.109700.870107.709106.39840HepG2SNRNP70
PNRC1ENSG00000146278.102592.746101689.482400.6178017.9973017.01540HepG2SRFBP1
PNRC1ENSG00000146278.101130.502302265.87970-1.0031036.4777035.19120HepG2SRSF1
PNRC1ENSG00000146278.101281.18890959.493400.417005.606604.67280HepG2SRSF7
PNRC1ENSG00000146278.102799.787801843.467400.6028017.6737016.49960HepG2SRSF9
PNRC1ENSG00000146278.102089.844101172.368200.833907.379105.47340HepG2SUB1
PNRC1ENSG00000146278.101688.751502039.97020-0.272603.059502.41160HepG2SUCLG1
PNRC1ENSG00000146278.101822.528201201.731200.600708.328706.76010HepG2SUPT6H
PNRC1ENSG00000146278.101249.50520904.743900.465703.678502.91420HepG2SUPV3L1
PNRC1ENSG00000146278.101533.653802036.83360-0.409405.777405.01820HepG2TAF15
PNRC1ENSG00000146278.10818.48380606.457000.432403.147502.08810HepG2TFIP11
PNRC1ENSG00000146278.101448.147301871.38950-0.369903.817502.84250HepG2TIA1
PNRC1ENSG00000146278.10469.342201384.71620-1.5609030.9364029.59200HepG2TIAL1
PNRC1ENSG00000146278.101127.652801396.86570-0.308902.790702.22480HepG2TRIM56
PNRC1ENSG00000146278.101441.225501774.71400-0.300302.864501.97480HepG2TUFM
PNRC1ENSG00000146278.10405.30330534.50360-0.399201.952701.31500HepG2UCHL5
PNRC1ENSG00000146278.101164.642101666.89710-0.5173010.194609.00230HepG2UPF1
PNRC1ENSG00000146278.10721.944101609.31990-1.1565038.4665036.60430HepG2UTP3
PNRC1ENSG00000146278.102222.485501233.518400.849307.945105.86680HepG2XRCC5
PNRC1ENSG00000146278.101504.949501044.553000.5267010.748509.56800HepG2ZC3H8
PNRC1ENSG00000146278.101538.174301833.26420-0.253203.649703.04490HepG2ZNF622
PNRC1ENSG00000146278.102084.255601253.253800.733806.683304.54710HepG2ZRANB2
PNRC1ENSG00000146278.10611.18240412.718900.566306.211105.41280K562AGGF1
PNRC1ENSG00000146278.10769.10770453.564600.761809.187107.10700K562AKAP8
PNRC1ENSG00000146278.10713.81100429.464800.732908.122306.94410K562AKAP8L
PNRC1ENSG00000146278.10179.40990371.36100-1.049603.111301.79250K562APOBEC3C
PNRC1ENSG00000146278.10668.09140359.901700.892307.829106.92570K562AQR
PNRC1ENSG00000146278.10238.21890169.311900.492502.254601.38830K562BCLAF1
PNRC1ENSG00000146278.10548.04970232.906801.2345013.7780011.78280K562BOP1
PNRC1ENSG00000146278.10242.59670159.013600.609302.713901.31490K562BUD13
PNRC1ENSG00000146278.10464.46350314.284600.563403.180901.61760K562CKAP4
PNRC1ENSG00000146278.10624.57270399.569200.644303.150502.00660K562CNOT7
PNRC1ENSG00000146278.10451.94780345.039500.389302.566701.50110K562CPEB4
PNRC1ENSG00000146278.10467.86160247.645200.917708.938207.51120K562CPSF6
PNRC1ENSG00000146278.10783.38450517.871600.597002.228801.35430K562CELF1
PNRC1ENSG00000146278.10683.38690484.233200.496904.138902.32780K562DDX19B
PNRC1ENSG00000146278.10251.86690356.91130-0.502902.168801.58020K562DDX47
PNRC1ENSG00000146278.1045.85760118.04470-1.364104.091202.84070K562EIF3A
PNRC1ENSG00000146278.1086.21090237.21420-1.4602012.3504010.64210K562EIF3G
PNRC1ENSG00000146278.10209.11530322.72800-0.626003.229201.96310K562EIF4B
PNRC1ENSG00000146278.10299.67840161.796500.889105.640903.91980K562FKBP4
PNRC1ENSG00000146278.10384.10960251.976000.608103.046502.14490K562FMR1
PNRC1ENSG00000146278.10506.04420213.573701.2444013.4775011.33380K562FTO
PNRC1ENSG00000146278.10120.06640372.66310-1.6340012.9274011.71790K562FXR1
PNRC1ENSG00000146278.10521.08130236.439001.1399012.8797011.14800K562GPKOW
PNRC1ENSG00000146278.1078.75900135.00530-0.777502.461601.58610K562HNRNPM
PNRC1ENSG00000146278.10333.14930222.473800.582402.973602.15010K562HSPD1
PNRC1ENSG00000146278.10738.49700455.727300.696307.933606.35510K562KIF1C
PNRC1ENSG00000146278.10427.38360201.892601.081807.691106.04380K562KRR1
PNRC1ENSG00000146278.10311.86020419.89800-0.429102.686301.85870K562MAGOH
PNRC1ENSG00000146278.10642.27160436.277300.557805.169303.54090K562MAK16
PNRC1ENSG00000146278.10276.23120419.06300-0.601304.539703.33100K562MATR3
PNRC1ENSG00000146278.10756.97820510.535500.568105.029003.73090K562MBNL1
PNRC1ENSG00000146278.10364.99810230.791400.661204.255403.15360K562METAP2
PNRC1ENSG00000146278.10601.23550357.852200.748505.160503.82640K562NAA15
PNRC1ENSG00000146278.10469.71390292.081500.685307.408406.27050K562NSUN2
PNRC1ENSG00000146278.10366.70040266.121400.462402.115501.38710K562PCBP3
PNRC1ENSG00000146278.10341.32840186.329600.873203.958802.95340K562PPIG
PNRC1ENSG00000146278.1086.70790407.94900-2.2342037.3883035.04760K562PTBP1
PNRC1ENSG00000146278.10854.71350425.825201.0051013.0568011.92330K562PUS1
PNRC1ENSG00000146278.10559.10440353.221400.662403.134201.61090K562RAVER1
PNRC1ENSG00000146278.10692.49200414.973800.738704.972104.19820K562RBM15
PNRC1ENSG00000146278.1059.05720181.91270-1.6231010.405408.38700K562SAFB
PNRC1ENSG00000146278.10452.87210288.259400.651602.756501.94320K562SF3A3
PNRC1ENSG00000146278.10417.81450212.440000.975705.518602.65800K562SMNDC1
PNRC1ENSG00000146278.10265.88790399.91370-0.588904.007503.16210K562SRSF1
PNRC1ENSG00000146278.10338.32800215.296600.652003.833702.21270K562SSRP1
PNRC1ENSG00000146278.10464.16890196.897601.2371011.175008.63040K562STAU1
PNRC1ENSG00000146278.10299.32630139.067601.105807.178905.48630K562SUPV3L1
PNRC1ENSG00000146278.1058.93910204.74750-1.7965014.7703012.87590K562SYNCRIP
PNRC1ENSG00000146278.10284.55160404.76540-0.508402.983202.24860K562TARDBP
PNRC1ENSG00000146278.10253.00930390.43490-0.625904.486503.40710K562TIA1
PNRC1ENSG00000146278.10243.08670170.723000.509702.236301.39890K562TRIM56
PNRC1ENSG00000146278.10348.15720191.867700.859505.084903.07120K562TRIP6
PNRC1ENSG00000146278.10227.67650147.238800.628702.500201.53650K562UCHL5
PNRC1ENSG00000146278.10607.59980309.702800.9721012.6767011.27720K562UPF1
PNRC1ENSG00000146278.10747.02530431.829400.790604.233802.51450K562UTP18
PNRC1ENSG00000146278.10536.19770295.359200.860207.438405.51680K562UTP3
PNRC1ENSG00000146278.10507.74590264.998600.9380010.532208.77980K562WDR3
PNRC1ENSG00000146278.10630.28510426.659900.562802.642101.38510K562WRN
PNRC1ENSG00000146278.10667.38330405.321800.719305.671304.36350K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PNRC1 is not available on ENCORE database.





4 RBPs can affect the splicing of PNRC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPNRC1ENSG00000146278.10chr6+897922648979245489790496897911538979347189793916-0.055000.000020.06199excludedHepG2BUD13
SEPNRC1ENSG00000146278.10chr6+8979226489792454897904968979115389793471897939160.138000.000000.00062includedHepG2HNRNPM
SEPNRC1ENSG00000146278.10chr6+897922698979245489790496897911538979347189793916-0.086000.001750.07895excludedHepG2PTBP1
SEPNRC1ENSG00000146278.10chr6+897922698979245489790496897911538979347189793916-0.082000.000590.03186excludedHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PNRC1 is not avaliable on ENCORE database.