DNMT1

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DNMT1	ENSG00000130816.15	83.18	93.05	88.12	ENCSR000AEF
HepG2	DNMT1	ENSG00000130816.15	73.48	71.18	72.33	ENCSR985KAT
K562	DNMT1	ENSG00000130816.15	117.96	121.56	119.76	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	DNMT1-BGKcLV13-K562	ENCSR600OWF	DNMT1	K562	Released		ENCSR712CQC	CRISPR	KD% = 85.6,78.0

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
DNMT1	ENCAB197TCQ	PA1-880	SH257771					BGKcLV13-19, Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
DNMT1	K562	CRISPR	ENCSR600OWF	ENCSR712CQC	DNMT1-BGKcLV13-19,DNMT1-BGKcLV13-20	NT-BGKcLV13-1,NT-BGKcLV13-2	85.6,78.0	Released	ENCODE4
DNMT1	K562	CRISPR			BGKcLV13-21,BGKcLV13-22	BGKcLV13-1,BGKcLV13-2		NotSatisfied	ENCODE4
DNMT1	K562	CRISPR			BGKcLV13-23,BGKcLV13-24	BGKcLV13-1,BGKcLV13-2		NotSatisfied	ENCODE4
DNMT1	HepG2	CRISPR			BGHcLV14-19,BGHcLV14-20	BGHcLV14-1,BGHcLV14-2	no band on the position,	NotSatisfied	ENCODE4
DNMT1	HepG2	CRISPR			BGHcLV14-21,BGHcLV14-22	BGHcLV14-1,BGHcLV14-2	no band on the position,	NotSatisfied	ENCODE4
DNMT1	HepG2	CRISPR			BGHcLV14-23,BGHcLV14-24	BGHcLV14-1,BGHcLV14-2	no band on the position,	NotSatisfied	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DNMT1 is not avaliable on ENCORE database.

Proteins bound to RNA

DNMT1 RNA is bound by 36 proteins.

eCLIP assay for DNMT1 is not avaliable on ENCORE database.

36 proteins are bound to DNMT1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	10267165	10267208	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23482	6.77156	K562	AQR
chr19	10267183	10267217	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.89687	3.91589	K562	SF3B4
chr19	10251450	10251509	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.05633	7.20615	HepG2	BCLAF1
chr19	10270424	10270496	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.50523	10.83532	K562	EFTUD2
chr19	10250678	10250723	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.04905	6.41278	HepG2	PRPF8
chr19	10273374	10273441	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.67651	12.67936	HepG2	AQR
chr19	10248468	10248510	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.93131	4.68690	HepG2	PRPF8
chr19	10284546	10284567	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.03477	12.44554	K562	UCHL5
chr19	10259576	10259628	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.79951	12.91918	K562	UCHL5
chr19	10286217	10286242	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.65329	10.38007	K562	UCHL5
chr19	10260151	10260227	-	3'-UTR,CDS,intron-Distal	3.81690	15.83517	K562	UCHL5
chr19	10291460	10291492	-	3'-UTR,CDS,intron-Distal	3.92724	7.05856	K562	ZNF800
chr19	10248597	10248681	-	3'-UTR,CDS,intron-Distal	4.49284	6.49194	K562	FXR2
chr19	10254455	10254532	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.99859	5.79432	HepG2	BCLAF1
chr19	10244116	10244170	-	3'-UTR,intron-Distal,intron-Proximal	5.26499	10.24910	HepG2	SUB1
chr19	10284520	10284610	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.78994	14.81341	K562	SF3B4
chr19	10271060	10271065	-	3'-UTR,CDS,intron-Distal	4.43203	9.48722	K562	UCHL5
chr19	10270424	10270490	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.16007	17.22676	K562	SF3B4
chr19	10266538	10266590	-	3'-UTR,CDS,intron-Distal	3.87360	5.31167	HepG2	GRWD1
chr19	10270424	10270443	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.45357	6.32494	K562	UCHL5
chr19	10262104	10262172	-	3'-UTR,CDS,intron-Distal	3.68745	15.00670	K562	ZNF800
chr19	10250489	10250552	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.01103	3.31322	HepG2	SF3B4
chr19	10284544	10284599	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.73368	11.79971	K562	U2AF2
chr19	10259531	10259563	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.70736	4.02817	HepG2	PRPF8
chr19	10266530	10266572	-	3'-UTR,CDS,intron-Distal	3.39812	10.46214	K562	ZNF622
chr19	10270432	10270489	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.44074	3.73688	K562	SMNDC1
chr19	10286217	10286246	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.69932	12.01186	K562	ZNF622
chr19	10265144	10265152	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.79478	5.42720	K562	UCHL5
chr19	10250452	10250488	-	3'-UTR,CDS,intron-Distal	4.61582	5.42280	K562	FXR2
chr19	10250353	10250401	-	3'-UTR,CDS,intron-Distal	3.57089	7.91657	HepG2	PPIG
chr19	10251455	10251475	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.05962	5.30139	K562	UCHL5
chr19	10273347	10273353	-	3'-UTR,CDS,intron-Distal	4.94481	6.64300	K562	ZNF622
chr19	10291453	10291475	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84656	4.65365	HepG2	GRWD1
chr19	10265069	10265156	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.03324	10.02532	K562	FXR2
chr19	10257117	10257172	-	3'-UTR,CDS,intron-Distal	3.58096	4.24159	K562	RBM15
chr19	10249249	10249284	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.62712	6.81103	HepG2	PPIG
chr19	10254586	10254660	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.30999	20.83584	HepG2	LIN28B
chr19	10270707	10270740	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.47004	15.84185	K562	ZNF800
chr19	10270517	10270577	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01967	5.64871	K562	FMR1
chr19	10291214	10291237	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.84763	17.73437	K562	UCHL5
chr19	10291085	10291140	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.74128	7.44851	HepG2	GRWD1
chr19	10260628	10260644	-	3'-UTR,CDS,intron-Distal	4.06103	10.47889	K562	UCHL5
chr19	10274000	10274051	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.29432	8.74054	HepG2	BUD13
chr19	10260532	10260628	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.51839	17.64524	K562	UCHL5
chr19	10287967	10287976	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.14458	5.71803	K562	UCHL5
chr19	10278995	10279007	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.78909	17.27097	K562	AQR
chr19	10265386	10265429	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.72697	4.65365	HepG2	GRWD1
chr19	10265341	10265350	-	3'-UTR,CDS,intron-Distal	3.38707	4.92880	K562	ZNF622
chr19	10284550	10284606	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.36329	5.89953	K562	U2AF1
chr19	10246370	10246415	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54806	5.50267	HepG2	PRPF8
chr19	10249255	10249328	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.36700	8.34684	K562	SF3B4
chr19	10256972	10257054	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.82416	9.28389	HepG2	PRPF8
chr19	10270730	10270738	-	3'-UTR,CDS,intron-Distal	3.53930	4.89070	K562	UCHL5
chr19	10254477	10254492	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.02794	6.11943	K562	UCHL5
chr19	10284544	10284601	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.17131	9.28125	HepG2	AQR
chr19	10254457	10254505	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.68504	5.82083	HepG2	GRWD1
chr19	10271061	10271087	-	3'-UTR,CDS,intron-Distal	3.41653	3.39306	HepG2	GRWD1
chr19	10284538	10284582	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.22611	25.58867	K562	AQR
chr19	10249142	10249185	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14022	4.70039	K562	FXR2
chr19	10278967	10279018	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.20068	5.05356	HepG2	PRPF8
chr19	10262072	10262120	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.98030	6.01390	HepG2	GRWD1
chr19	10291221	10291246	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.53376	3.39306	HepG2	GRWD1
chr19	10273998	10274077	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.77908	17.65634	HepG2	AQR
chr19	10271058	10271066	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.04033	14.50197	K562	ZNF800
chr19	10260562	10260622	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49239	8.77723	HepG2	PPIG
chr19	10262444	10262473	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.11728	5.64813	K562	DDX24
chr19	10270413	10270481	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19472	4.04646	K562	PRPF8
chr19	10273384	10273426	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.93706	13.78461	K562	UCHL5
chr19	10286260	10286294	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.90228	10.47889	K562	UCHL5
chr19	10251445	10251509	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.80710	13.41787	HepG2	PPIG
chr19	10292747	10292784	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54652	4.10684	HepG2	AQR
chr19	10260181	10260225	-	3'-UTR,CDS,intron-Distal	3.90382	11.97877	K562	ZNF622
chr19	10257108	10257184	-	3'-UTR,CDS,intron-Distal	3.09819	12.89925	K562	ZNF622
chr19	10291220	10291245	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.10756	5.21580	K562	GRWD1
chr19	10291535	10291624	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66052	11.92111	K562	AQR
chr19	10270425	10270443	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.34989	4.69071	HepG2	GRWD1
chr19	10266590	10266620	-	3'-UTR,CDS,intron-Distal	3.41298	3.60157	HepG2	GRWD1
chr19	10244170	10244218	-	3'-UTR,intron-Distal,intron-Proximal	6.37619	30.21106	HepG2	SUB1
chr19	10252777	10252847	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.00445	12.41831	K562	ZNF622
chr19	10270693	10270715	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38551	14.83875	K562	PUM1
chr19	10248672	10248686	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.03173	5.10740	K562	DDX24
chr19	10260233	10260276	-	3'-UTR,CDS,intron-Distal	3.53516	9.66555	K562	UCHL5
chr19	10259578	10259617	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38767	3.39306	HepG2	GRWD1
chr19	10292728	10292753	-	3'-UTR,CDS,intron-Distal	3.23870	3.79741	HepG2	GRWD1
chr19	10264978	10265044	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.10503	16.82950	K562	ZNF622
chr19	10270342	10270385	-	3'-UTR,CDS,intron-Distal	3.61513	8.45427	K562	UCHL5
chr19	10264968	10264976	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.99274	9.45444	K562	UCHL5
chr19	10273994	10274082	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.46506	21.96791	K562	AQR
chr19	10270316	10270335	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.65067	8.69247	K562	AQR
chr19	10283754	10283807	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.00920	3.24122	K562	GPKOW
chr19	10262004	10262076	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.17444	16.21933	K562	AQR
chr19	10266528	10266582	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74746	13.81406	K562	UCHL5
chr19	10265581	10265654	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12237	5.64090	K562	GRWD1
chr19	10262422	10262478	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.10718	6.26332	HepG2	GRWD1
chr19	10252645	10252750	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.92273	7.66017	HepG2	PRPF8
chr19	10254441	10254453	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.04176	3.28075	K562	GRWD1
chr19	10273998	10274069	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.40467	5.45334	K562	U2AF2
chr19	10254441	10254459	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.11810	3.06934	HepG2	FXR2
chr19	10266530	10266538	-	3'-UTR,CDS,intron-Distal	4.01285	3.31827	HepG2	GRWD1
chr19	10265383	10265443	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.72538	8.92211	K562	FXR2
chr19	10267066	10267100	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.76718	3.59112	HepG2	PPIG
chr19	10262064	10262141	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.25115	4.65204	K562	TRA2A
chr19	10260569	10260643	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.58264	17.24094	K562	ZNF622
chr19	10265313	10265356	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.77755	8.47054	K562	FXR2
chr19	10270520	10270536	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81791	12.25709	K562	ZNF622
chr19	10252869	10252895	-	3'-UTR,CDS,intron-Distal	3.31087	7.85158	K562	UCHL5
chr19	10283789	10283850	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.63693	18.38862	K562	UCHL5
chr19	10260222	10260282	-	3'-UTR,CDS,intron-Distal	3.91744	8.66431	K562	FXR2
chr19	10284567	10284581	-	3'-UTR,5'-UTR,CDS,intron-Distal	4.37186	7.51551	K562	UCHL5
chr19	10254478	10254551	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18260	12.90389	K562	ZNF622
chr19	10270265	10270355	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.71047	13.70454	K562	PRPF8
chr19	10292727	10292775	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.29162	6.44495	HepG2	U2AF2
chr19	10291237	10291246	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.55206	19.64484	K562	UCHL5
chr19	10270517	10270584	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43080	19.80110	K562	UCHL5
chr19	10283766	10283781	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.14565	5.46976	K562	UCHL5
chr19	10259651	10259694	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.86520	11.79915	K562	UCHL5
chr19	10292661	10292793	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.36089	25.85319	K562	AQR
chr19	10264970	10264989	-	3'-UTR,5'-UTR,CDS,intron-Distal	4.01575	3.26507	K562	MTPAP
chr19	10250972	10251003	-	3'-UTR,CDS,intron-Distal	3.31470	3.79741	HepG2	GRWD1
chr19	10270518	10270576	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.39288	6.67863	K562	FXR2
chr19	10262037	10262110	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.44489	12.15317	HepG2	PRPF8
chr19	10262423	10262477	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.65854	21.03767	K562	UCHL5
chr19	10260628	10260644	-	3'-UTR,CDS,intron-Distal	3.82261	6.15582	K562	GRWD1
chr19	10262170	10262223	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.18988	17.95226	K562	UCHL5
chr19	10262171	10262219	-	3'-UTR,CDS,intron-Distal	3.08563	11.45154	K562	ZNF622
chr19	10270730	10270739	-	3'-UTR,CDS,intron-Distal	3.21231	11.04153	K562	PUM1
chr19	10270538	10270590	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.70076	5.00154	HepG2	AQR
chr19	10291462	10291486	-	3'-UTR,CDS,intron-Distal	3.59012	4.13746	HepG2	PPIG
chr19	10291453	10291461	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.11197	5.60102	K562	GRWD1
chr19	10271061	10271109	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.02202	3.74557	K562	U2AF2
chr19	10260129	10260158	-	3'-UTR,CDS,intron-Distal	3.54863	4.41784	HepG2	GRWD1
chr19	10260571	10260643	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.29202	7.44179	K562	MTPAP
chr19	10262072	10262089	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54369	7.68059	K562	GRWD1
chr19	10262070	10262104	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46033	8.80388	K562	ZNF800
chr19	10270517	10270581	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.20312	8.12130	HepG2	PPIG
chr19	10264994	10265054	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.52745	11.67184	K562	UCHL5
chr19	10271065	10271094	-	3'-UTR,CDS,intron-Distal	4.98027	14.01494	K562	UCHL5
chr19	10244218	10244279	-	3'-UTR,intron-Distal	7.46697	33.11451	HepG2	SUB1
chr19	10273392	10273438	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.78141	3.19080	K562	U2AF2
chr19	10265668	10265714	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.01786	6.56513	K562	FXR2
chr19	10251464	10251505	-	3'-UTR,CDS,intron-Distal	3.28838	9.32936	K562	ZNF622
chr19	10260559	10260628	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.93437	17.25287	K562	GRWD1
chr19	10262477	10262524	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.03229	17.37155	K562	UCHL5
chr19	10291452	10291504	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23860	3.06934	HepG2	FXR2
chr19	10262424	10262473	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.79107	5.06180	HepG2	BCLAF1
chr19	10265579	10265651	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.60718	10.66738	HepG2	GRWD1
chr19	10266591	10266621	-	3'-UTR,CDS,intron-Distal	3.47532	5.26188	K562	GRWD1
chr19	10291161	10291201	-	3'-UTR,5'-UTR,CDS,intron-Distal	4.73090	4.91614	HepG2	GRWD1
chr19	10262473	10262523	-	3'-UTR,CDS,intron-Distal	4.39843	18.15737	K562	ZNF622
chr19	10254505	10254568	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.94621	7.86337	HepG2	GRWD1
chr19	10267080	10267107	-	3'-UTR,CDS,intron-Distal	5.08110	7.05595	K562	PUM1
chr19	10252761	10252852	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.30798	6.21281	HepG2	GRWD1
chr19	10270349	10270399	-	3'-UTR,CDS,intron-Distal	3.84946	8.71294	K562	PUM1
chr19	10254567	10254663	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.45589	34.23481	K562	LIN28B
chr19	10244282	10244338	-	3'-UTR,intron-Distal	3.78158	6.36657	K562	YBX3
chr19	10251538	10251583	-	3'-UTR,CDS,intron-Distal	3.92792	3.35081	HepG2	G3BP1
chr19	10265359	10265383	-	3'-UTR,CDS,intron-Distal	5.18014	10.87798	K562	FXR2
chr19	10262114	10262171	-	3'-UTR,CDS,intron-Distal	4.47204	18.33672	K562	ZNF622
chr19	10274001	10274035	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.05388	10.20509	K562	PUM1
chr19	10291031	10291058	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.79220	5.52342	HepG2	PPIG
chr19	10283797	10283850	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.61276	13.91632	K562	ZNF622
chr19	10279007	10279028	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.43385	8.45427	K562	UCHL5
chr19	10250945	10251021	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08956	4.51666	K562	RBM15
chr19	10273984	10274068	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.26177	9.70941	HepG2	PRPF8
chr19	10264982	10265045	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.42256	4.71502	HepG2	GRWD1
chr19	10262477	10262523	-	3'-UTR,CDS,intron-Distal	3.66181	3.62547	K562	MTPAP
chr19	10246796	10246860	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32182	5.74118	K562	YBX3
chr19	10262073	10262092	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.57791	8.43531	K562	ZNF622
chr19	10252784	10252824	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.35124	3.44826	K562	METAP2
chr19	10270536	10270596	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.50878	20.26048	K562	ZNF622
chr19	10271064	10271093	-	3'-UTR,CDS,intron-Distal	3.68336	9.72545	K562	ZNF622
chr19	10278970	10279060	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.26536	9.90693	K562	SF3B4
chr19	10262068	10262170	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.61810	30.66434	K562	UCHL5
chr19	10273342	10273370	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.11810	3.06934	HepG2	FXR2
chr19	10291221	10291246	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.04902	8.19482	K562	ZNF622
chr19	10270309	10270376	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.20517	12.77088	HepG2	PRPF8
chr19	10267066	10267101	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14458	5.30139	K562	UCHL5
chr19	10244148	10244290	-	3'-UTR,intron-Distal,intron-Proximal	3.62064	3.54552	HepG2	LARP4
chr19	10247860	10247949	-	3'-UTR,CDS,intron-Distal	5.45450	9.87574	K562	FXR2
chr19	10273408	10273424	-	3'-UTR,CDS,intron-Distal	3.14115	6.46814	K562	ZNF622
chr19	10251454	10251511	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49831	13.12804	K562	DDX24
chr19	10260561	10260628	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.42855	6.18214	HepG2	GRWD1
chr19	10273342	10273363	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.55111	11.40157	K562	UCHL5
chr19	10265723	10265730	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.93904	9.71209	K562	UCHL5
chr19	10262072	10262124	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.23668	6.69553	HepG2	PPIG
chr19	10291453	10291496	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.51378	21.03767	K562	UCHL5
chr19	10262425	10262473	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38349	12.80038	K562	ZNF622
chr19	10291028	10291057	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.64243	10.14758	K562	ZNF622
chr19	10262373	10262454	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.35422	11.50355	HepG2	PRPF8
chr19	10260218	10260278	-	3'-UTR,CDS,intron-Distal	3.99961	6.85118	K562	FMR1
chr19	10270699	10270730	-	3'-UTR,CDS,intron-Distal	3.53526	6.62505	K562	UCHL5
chr19	10270434	10270441	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.44345	4.35124	K562	ZNF800
chr19	10271057	10271112	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74034	4.79983	HepG2	U2AF2
chr19	10270519	10270599	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.90103	34.01825	K562	PUM1
chr19	10259641	10259693	-	3'-UTR,CDS,intron-Distal	4.17695	4.83756	K562	FMR1
chr19	10246948	10246962	-	3'-UTR,CDS,intron-Distal	3.43096	3.32039	HepG2	PPIG
chr19	10265651	10265726	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.45823	11.54663	HepG2	GRWD1
chr19	10283797	10283849	-	3'-UTR,5'-UTR,CDS,intron-Distal	4.81760	4.45558	HepG2	GRWD1
chr19	10259663	10259693	-	3'-UTR,CDS,intron-Distal	3.61156	7.17324	K562	BUD13
chr19	10260528	10260536	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01340	4.45146	K562	PUM1
chr19	10265681	10265722	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.02713	7.40409	K562	BUD13
chr19	10265674	10265717	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.14228	16.97638	K562	UCHL5
chr19	10274003	10274072	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.61825	15.78167	K562	SF3B4
chr19	10262092	10262114	-	3'-UTR,CDS,intron-Distal	3.73039	8.71976	K562	ZNF622
chr19	10291147	10291197	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.36095	9.42893	K562	UCHL5
chr19	10262073	10262190	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19382	5.25376	K562	MTPAP
chr19	10270520	10270599	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59570	19.92948	K562	ZNF800
chr19	10251442	10251499	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.85887	12.14650	K562	RBM15
chr19	10259657	10259692	-	3'-UTR,CDS,intron-Distal	3.07960	4.29277	HepG2	GRWD1
chr19	10279028	10279039	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.78201	7.79255	K562	UCHL5
chr19	10291413	10291479	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.07373	10.08968	K562	AQR
chr19	10251390	10251473	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52596	6.74268	HepG2	PRPF8
chr19	10254441	10254457	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.53526	8.23108	K562	UCHL5
chr19	10247760	10247807	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46616	5.47500	HepG2	PPIG
chr19	10264968	10264978	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.61157	9.48271	K562	ZNF622
chr19	10250311	10250383	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.00751	10.61060	HepG2	PRPF8
chr19	10244096	10244284	-	3'-UTR,intron-Distal,intron-Proximal	4.99607	16.21534	K562	NOLC1
chr19	10270517	10270590	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.92456	11.74344	HepG2	GRWD1
chr19	10287990	10288051	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.69979	3.47293	K562	U2AF2
chr19	10257154	10257197	-	3'-UTR,CDS,intron-Distal	4.45437	7.17313	K562	FMR1
chr19	10283764	10283852	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.74481	3.81194	K562	TRA2A
chr19	10267067	10267117	-	3'-UTR,CDS,intron-Distal	5.09781	8.32768	HepG2	GRWD1
chr19	10264987	10265027	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.26816	7.60977	HepG2	PPIG
chr19	10284549	10284597	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.64003	5.76944	HepG2	U2AF2
chr19	10254620	10254659	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59316	5.74135	K562	DDX24
chr19	10244965	10244991	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.61860	4.48002	K562	AQR
chr19	10291029	10291085	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.57529	6.58996	HepG2	GRWD1
chr19	10270515	10270599	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.78516	6.56241	HepG2	FXR2
chr19	10260576	10260645	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.07764	3.72388	HepG2	FXR2
chr19	10265295	10265416	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.53675	9.40000	K562	FMR1
chr19	10286254	10286292	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.74196	10.31263	K562	ZNF622
chr19	10270335	10270389	-	3'-UTR,CDS,intron-Distal	4.99517	7.83063	HepG2	GRWD1
chr19	10270693	10270707	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.88777	12.17342	K562	ZNF800
chr19	10260127	10260151	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.47859	9.36208	K562	UCHL5
chr19	10291078	10291136	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.25414	9.80632	K562	UCHL5
chr19	10291461	10291495	-	3'-UTR,CDS,intron-Distal	3.95590	7.28917	K562	GRWD1
chr19	10286203	10286219	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.73201	13.40140	K562	AQR
chr19	10250976	10251005	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.85273	7.83545	HepG2	PPIG
chr19	10267066	10267098	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.00450	4.83079	K562	DDX24
chr19	10260607	10260643	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20648	7.10301	K562	ZNF800
chr19	10270422	10270443	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38452	3.85861	K562	PUM1
chr19	10305513	10305608	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.36067	14.45631	K562	FMR1
chr19	10277349	10277359	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.65343	6.43326	K562	UCHL5
chr19	10277289	10277349	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.65329	20.36431	K562	UCHL5
chr19	10277273	10277361	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.68017	7.94965	K562	TRA2A
chr19	10277298	10277348	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.39421	6.01390	HepG2	GRWD1
chr19	10305525	10305606	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.98143	11.39323	HepG2	GRWD1
chr19	10277277	10277289	-	5'-UTR,CDS,intron-Distal	5.54826	11.41097	K562	UCHL5
chr19	10305494	10305625	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76523	18.66793	K562	FXR2
chr19	10277260	10277312	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.52239	5.89918	HepG2	PRPF8
chr19	10277182	10277275	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.10659	41.64569	K562	AQR
chr19	10305530	10305616	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.16880	6.95515	K562	DDX3X
chr19	10277278	10277354	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.27454	17.65298	K562	ZNF622
chr19	10247692	10247759	-	CDS,intron-Distal,intron-Proximal	4.49660	6.77156	K562	AQR
chr19	10246367	10246402	-	CDS,intron-Distal,intron-Proximal	4.17206	4.49024	K562	AQR
chr19	10246402	10246411	-	CDS,intron-Distal,intron-Proximal	4.76838	3.62536	K562	AQR
chr19	10305436	10305496	-	intron-Distal,intron-Proximal	3.79527	5.23469	HepG2	AQR
chr19	10252540	10252587	-	intron-Distal	3.08533	5.20867	K562	BUD13
chr19	10290956	10291021	-	intron-Distal,intron-Proximal	3.07386	4.38027	K562	AQR
chr19	10270263	10270309	-	intron-Distal,intron-Proximal	4.10728	4.54206	HepG2	PRPF8
chr19	10250319	10250351	-	intron-Distal,intron-Proximal	4.73834	4.58968	K562	PRPF8
chr19	10283859	10283906	-	intron-Distal,intron-Proximal	4.96250	10.03191	K562	SF3B4
chr19	10248174	10248246	-	intron-Distal	3.64004	4.35933	K562	RBFOX2
chr19	10274072	10274108	-	intron-Distal,intron-Proximal	4.56920	7.39218	K562	SF3B4
chr19	10250676	10250719	-	intron-Distal,intron-Proximal	3.11947	4.07440	K562	PRPF8
chr19	10305397	10305450	-	intron-Distal,intron-Proximal	4.23347	5.05356	HepG2	PRPF8
chr19	10270198	10270235	-	intron-Distal,intron-Proximal	3.58437	4.75435	K562	EFTUD2
chr19	10277181	10277219	-	intron-Distal,intron-Proximal	3.68256	10.62901	HepG2	PRPF8
chr19	10249328	10249392	-	intron-Distal,intron-Proximal	5.48539	10.93934	HepG2	SF3B4
chr19	10334593	10334683	-	CDS,intron-Distal	4.31293	3.73331	K562	RBM15
chr19	10305353	10305448	-	intron-Distal,intron-Proximal	5.06177	18.07708	K562	AQR
chr19	10277018	10277049	-	intron-Distal	3.63142	3.54718	K562	PRPF8
chr19	10277204	10277262	-	intron-Distal,intron-Proximal	3.80196	6.50179	HepG2	BUD13
chr19	10277367	10277434	-	intron-Distal,intron-Proximal	5.74327	21.68248	K562	SF3B4
chr19	10262393	10262415	-	intron-Distal,intron-Proximal	4.28109	8.63879	K562	UCHL5
chr19	10334217	10334324	-	intron-Distal	4.24926	4.49605	HepG2	UPF1
chr19	10284469	10284538	-	intron-Distal,intron-Proximal	5.68137	6.22530	K562	AQR
chr19	10304622	10304711	-	intron-Distal	4.24141	3.60944	K562	TARDBP
chr19	10291415	10291453	-	intron-Distal,intron-Proximal	3.63991	4.35635	K562	PRPF8
chr19	10305451	10305492	-	intron-Distal,intron-Proximal	4.68371	4.35676	HepG2	PRPF8
chr19	10278962	10278995	-	intron-Distal,intron-Proximal	5.49399	16.94745	K562	AQR
chr19	10273925	10273972	-	intron-Distal,intron-Proximal	3.41239	3.17610	K562	EFTUD2
chr19	10275044	10275122	-	intron-Distal	5.14525	7.98520	HepG2	ILF3
chr19	10277170	10277255	-	intron-Distal,intron-Proximal	4.22438	12.01658	HepG2	RBM22
chr19	10249328	10249390	-	intron-Distal,intron-Proximal	6.77333	21.55110	K562	SF3B4
chr19	10248464	10248500	-	intron-Distal,intron-Proximal	5.41108	13.79863	K562	AQR
chr19	10284582	10284608	-	intron-Distal,intron-Proximal	4.08972	18.90441	K562	AQR
chr19	10246755	10246796	-	intron-Distal,intron-Proximal	4.71233	5.68502	HepG2	PRPF8
chr19	10259518	10259540	-	intron-Distal,intron-Proximal	4.21081	5.47926	K562	AQR
chr19	10305400	10305434	-	intron-Distal,intron-Proximal	4.47736	4.22101	K562	PRPF8
chr19	10305349	10305367	-	intron-Distal,intron-Proximal	4.01595	3.02181	K562	PRPF8
chr19	10248500	10248507	-	intron-Distal,intron-Proximal	5.14339	11.03354	K562	AQR
chr19	10254690	10254715	-	intron-Distal,intron-Proximal	3.77672	5.47851	K562	SF3B4
chr19	10266489	10266518	-	intron-Distal,intron-Proximal	4.74336	4.65563	K562	AQR
chr19	10334707	10334767	-	CDS,intron-Distal	4.19570	3.73331	K562	RBM15
chr19	10305448	10305480	-	intron-Distal,intron-Proximal	6.61607	20.80778	K562	AQR
chr19	10269762	10269834	-	intron-Distal	4.11986	3.19904	K562	TIA1
chr19	10277375	10277425	-	intron-Distal,intron-Proximal	4.30351	3.50006	HepG2	SF3B4
chr19	10270294	10270316	-	intron-Distal,intron-Proximal	5.81979	10.04245	K562	AQR
chr19	10305480	10305496	-	intron-Distal,intron-Proximal	4.54985	12.85453	K562	AQR
chr19	10260089	10260117	-	intron-Distal,intron-Proximal	4.70859	4.13847	K562	AQR
chr19	10275704	10275766	-	intron-Distal	3.57682	4.97292	HepG2	ILF3
chr19	10286173	10286203	-	intron-Distal,intron-Proximal	6.57707	20.80778	K562	AQR
chr19	10286173	10286215	-	intron-Distal,intron-Proximal	4.82166	6.48028	K562	PRPF8
chr19	10277148	10277259	-	intron-Distal,intron-Proximal	3.78262	10.99012	K562	PRPF8
chr19	10251423	10251445	-	intron-Distal,intron-Proximal	3.56233	3.15137	HepG2	BUD13
chr19	10270603	10270662	-	intron-Distal,intron-Proximal	3.42971	4.76523	HepG2	SF3B4
chr19	10254715	10254738	-	intron-Distal,intron-Proximal	3.32327	4.13013	K562	SF3B4
chr19	10275231	10275292	-	intron-Distal	3.08138	7.18342	HepG2	ILF3
chr19	10270606	10270658	-	intron-Distal,intron-Proximal	4.19316	5.26108	K562	SF3B4
chr19	10276654	10276750	-	intron-Distal	3.68067	3.51708	K562	RBFOX2
chr19	10259540	10259559	-	intron-Distal,intron-Proximal	3.99810	4.49024	K562	AQR
chr19	10277170	10277243	-	intron-Distal,intron-Proximal	4.17222	7.26711	HepG2	EFTUD2
chr19	10277219	10277260	-	intron-Distal,intron-Proximal	5.94772	17.51077	HepG2	PRPF8
chr19	10283713	10283743	-	intron-Distal,intron-Proximal	4.78459	8.01338	K562	AQR
chr19	10284613	10284637	-	intron-Distal,intron-Proximal	5.20571	4.40745	K562	SF3B4
chr19	10290949	10291020	-	intron-Distal,intron-Proximal	4.04298	5.85201	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for DNMT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DNMT1 is not available on ENCORE database.
134 RBPs can affect the levels of DNMT1.

The Knockdown/knockout RNA-Seq assay for DNMT1 is not available on ENCORE database.

134 RBPs can affect the gene expression of DNMT1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DNMT1	ENSG00000130816.10	1288.71580	1625.13870	-0.33460	2.79480	1.71780	HepG2	AATF
DNMT1	ENSG00000130816.10	2197.33630	1321.81420	0.73310	7.67080	6.83180	HepG2	AKAP1
DNMT1	ENSG00000130816.10	986.13300	1294.66360	-0.39270	2.52550	1.52890	HepG2	AKAP8
DNMT1	ENSG00000130816.10	1998.69060	2317.84100	-0.21370	2.39790	1.67850	HepG2	AKAP8L
DNMT1	ENSG00000130816.10	796.64090	1093.62730	-0.45710	3.43000	2.55650	HepG2	ASCC1
DNMT1	ENSG00000130816.10	2303.59740	3351.64440	-0.54100	13.45210	12.13910	HepG2	AUH
DNMT1	ENSG00000130816.10	1625.16790	2103.71050	-0.37230	2.59390	1.68850	HepG2	BCCIP
DNMT1	ENSG00000130816.10	937.25970	1827.69080	-0.96350	9.17170	7.66080	HepG2	BCLAF1
DNMT1	ENSG00000130816.10	1510.64500	3545.88080	-1.23100	32.75700	31.09140	HepG2	BOP1
DNMT1	ENSG00000130816.10	1282.48660	2361.91340	-0.88100	20.11510	18.38820	HepG2	CALR
DNMT1	ENSG00000130816.10	1242.88460	2306.47640	-0.89200	36.50410	34.71790	HepG2	CKAP4
DNMT1	ENSG00000130816.10	1513.24320	3255.27540	-1.10510	24.30110	22.51690	HepG2	CPSF6
DNMT1	ENSG00000130816.10	1903.95660	2410.20950	-0.34020	3.16890	1.98410	HepG2	CPSF7
DNMT1	ENSG00000130816.10	2065.89080	2494.86630	-0.27220	3.05470	2.38540	HepG2	CELF1
DNMT1	ENSG00000130816.10	1602.27440	2133.68940	-0.41320	7.70770	6.43290	HepG2	DDX19B
DNMT1	ENSG00000130816.10	1079.17780	1793.70210	-0.73300	11.30180	10.04120	HepG2	DDX21
DNMT1	ENSG00000130816.10	1127.46440	1754.71080	-0.63820	9.93290	8.25260	HepG2	DDX24
DNMT1	ENSG00000130816.10	1207.70100	1566.48270	-0.37530	3.01250	1.55860	HepG2	DDX28
DNMT1	ENSG00000130816.10	994.59200	1360.82020	-0.45230	4.19200	2.61720	HepG2	DDX47
DNMT1	ENSG00000130816.10	1503.76520	2068.52450	-0.46000	2.76310	1.99050	HepG2	DDX55
DNMT1	ENSG00000130816.10	2504.65770	3696.61640	-0.56160	3.09170	2.05980	HepG2	DDX59
DNMT1	ENSG00000130816.10	1486.65820	2343.94830	-0.65690	8.83490	7.14660	HepG2	DDX5
DNMT1	ENSG00000130816.10	778.85060	1087.89270	-0.48210	3.23840	2.57560	HepG2	DDX6
DNMT1	ENSG00000130816.10	899.01850	1391.30310	-0.63000	7.89280	6.32230	HepG2	DHX30
DNMT1	ENSG00000130816.10	1474.38850	2207.25080	-0.58210	13.31320	12.05480	HepG2	DKC1
DNMT1	ENSG00000130816.10	1077.10890	1442.49750	-0.42140	5.52270	4.55840	HepG2	DNAJC21
DNMT1	ENSG00000130816.10	1112.80840	1429.82530	-0.36160	5.82540	4.93130	HepG2	DNAJC2
DNMT1	ENSG00000130816.10	1108.11830	1535.20000	-0.47030	4.28770	2.90390	HepG2	EFTUD2
DNMT1	ENSG00000130816.10	907.52590	1651.26030	-0.86360	9.26760	7.33850	HepG2	AGO1
DNMT1	ENSG00000130816.10	783.20070	1045.50140	-0.41670	2.91580	2.30730	HepG2	EIF2S1
DNMT1	ENSG00000130816.10	1027.38060	1494.97960	-0.54120	4.86940	3.69590	HepG2	EIF3D
DNMT1	ENSG00000130816.10	1912.83560	2646.49880	-0.46840	9.06620	7.71640	HepG2	EIF4G1
DNMT1	ENSG00000130816.10	1536.82050	2535.12140	-0.72210	10.49490	8.96030	HepG2	EIF4G2
DNMT1	ENSG00000130816.10	2621.20080	3848.29900	-0.55400	14.97200	13.75320	HepG2	ETF1
DNMT1	ENSG00000130816.10	1862.22690	2254.34210	-0.27570	2.42320	1.64300	HepG2	EWSR1
DNMT1	ENSG00000130816.10	1399.13030	1709.03780	-0.28870	2.43290	1.35830	HepG2	FASTKD2
DNMT1	ENSG00000130816.10	1287.06510	1721.56760	-0.41960	3.26230	1.88590	HepG2	FKBP4
DNMT1	ENSG00000130816.10	1485.88000	3260.93070	-1.13400	6.94340	5.34400	HepG2	FTO
DNMT1	ENSG00000130816.10	2639.77140	1166.06070	1.17870	22.73580	20.96550	HepG2	FXR1
DNMT1	ENSG00000130816.10	1562.86360	1148.41470	0.44440	3.66430	2.63160	HepG2	G3BP2
DNMT1	ENSG00000130816.10	1624.56700	3690.00870	-1.18360	22.51110	20.87690	HepG2	GPKOW
DNMT1	ENSG00000130816.10	1084.27120	1810.00500	-0.73930	4.23810	2.48890	HepG2	HLTF
DNMT1	ENSG00000130816.10	826.51140	1456.31770	-0.81720	12.44910	11.23870	HepG2	HNRNPA1
DNMT1	ENSG00000130816.10	1678.22710	2465.22490	-0.55480	6.65520	5.31340	HepG2	HNRNPA2B1
DNMT1	ENSG00000130816.10	1057.93760	1619.90600	-0.61470	7.60890	6.50500	HepG2	HNRNPC
DNMT1	ENSG00000130816.10	1825.58230	2680.63040	-0.55420	12.98450	11.58390	HepG2	HNRNPF
DNMT1	ENSG00000130816.10	2086.69040	1095.63340	0.92940	15.88590	14.35290	HepG2	HNRNPK
DNMT1	ENSG00000130816.10	1229.19720	3521.45230	-1.51850	41.09230	39.11120	HepG2	HNRNPLL
DNMT1	ENSG00000130816.10	1739.19350	2639.66240	-0.60190	10.32610	9.01320	HepG2	IGF2BP1
DNMT1	ENSG00000130816.10	1651.57880	1031.88420	0.67850	2.29560	1.40640	HepG2	IGF2BP3
DNMT1	ENSG00000130816.10	1424.00470	1643.73520	-0.20700	2.70700	1.98130	HepG2	ILF2
DNMT1	ENSG00000130816.10	2170.61830	3646.67550	-0.74850	8.02320	6.59890	HepG2	LARP4
DNMT1	ENSG00000130816.10	2360.84880	1172.92320	1.00910	12.43610	11.16670	HepG2	MATR3
DNMT1	ENSG00000130816.10	1779.65170	2391.82250	-0.42650	4.84540	3.79550	HepG2	MSI2
DNMT1	ENSG00000130816.10	1141.42560	3591.64140	-1.65380	26.44590	23.70230	HepG2	MTPAP
DNMT1	ENSG00000130816.10	1676.13150	3122.51320	-0.89760	16.97300	15.30620	HepG2	NSUN2
DNMT1	ENSG00000130816.10	1433.36000	1127.73510	0.34590	4.51370	3.77050	HepG2	PCBP1
DNMT1	ENSG00000130816.10	1000.72190	1785.42350	-0.83520	7.22280	5.62260	HepG2	PCBP2
DNMT1	ENSG00000130816.10	1990.12200	2484.47720	-0.32010	4.95430	3.95040	HepG2	PRPF4
DNMT1	ENSG00000130816.10	568.15640	1594.94760	-1.48910	20.52190	18.62760	HepG2	PRPF8
DNMT1	ENSG00000130816.10	1723.45400	1147.55790	0.58660	11.57220	10.60510	HepG2	PTBP1
DNMT1	ENSG00000130816.10	1515.70850	2539.03430	-0.74430	12.95110	11.78990	HepG2	PUF60
DNMT1	ENSG00000130816.10	2965.83140	2695.41270	0.13780	1.96670	1.44970	HepG2	PUM1
DNMT1	ENSG00000130816.10	1781.04200	2349.92920	-0.39990	8.01630	7.05910	HepG2	PUS1
DNMT1	ENSG00000130816.10	1706.80100	1242.73710	0.45770	6.23830	5.35300	HepG2	QKI
DNMT1	ENSG00000130816.10	1227.88220	1722.46190	-0.48830	2.32400	1.67400	HepG2	RAVER1
DNMT1	ENSG00000130816.10	2479.83030	3139.47710	-0.34030	3.98050	2.97340	HepG2	RBM15
DNMT1	ENSG00000130816.10	1287.36650	3216.43200	-1.32100	57.73270	55.97300	HepG2	RBM22
DNMT1	ENSG00000130816.10	2420.89640	1277.08410	0.92260	30.58770	29.19740	HepG2	NELFE
DNMT1	ENSG00000130816.10	2129.83000	1189.49850	0.84030	25.42850	23.89340	HepG2	RECQL
DNMT1	ENSG00000130816.10	982.43560	2887.59430	-1.55540	48.14500	46.14870	HepG2	RPLP0
DNMT1	ENSG00000130816.10	965.83470	1692.91960	-0.80970	6.58610	5.17490	HepG2	RPS10
DNMT1	ENSG00000130816.10	1169.94400	1454.78000	-0.31440	2.66940	2.06460	HepG2	RPS19
DNMT1	ENSG00000130816.10	1370.61400	1776.69830	-0.37440	3.24150	2.37440	HepG2	RPS2
DNMT1	ENSG00000130816.10	686.55190	1577.65950	-1.20030	15.89110	14.28640	HepG2	RRP9
DNMT1	ENSG00000130816.10	2301.15140	3017.65780	-0.39110	2.59990	1.94590	HepG2	SF3A3
DNMT1	ENSG00000130816.10	1325.30360	3485.48460	-1.39500	39.60140	37.33200	HepG2	SF3B1
DNMT1	ENSG00000130816.10	1509.77940	1194.67470	0.33760	4.27420	3.56360	HepG2	SF3B4
DNMT1	ENSG00000130816.10	2022.11970	2434.77550	-0.26790	3.94240	3.12790	HepG2	SLBP
DNMT1	ENSG00000130816.10	1263.70210	3878.23340	-1.61770	25.07160	22.82570	HepG2	SNRNP70
DNMT1	ENSG00000130816.10	1287.69850	3632.78150	-1.49630	102.41360	100.48080	HepG2	SRFBP1
DNMT1	ENSG00000130816.10	2546.30650	1247.01490	1.02980	41.67100	40.31330	HepG2	SRSF1
DNMT1	ENSG00000130816.10	2572.95120	3750.55700	-0.54370	4.63340	3.30650	HepG2	SRSF3
DNMT1	ENSG00000130816.10	1593.62740	2633.60740	-0.72470	21.09080	19.49800	HepG2	SRSF7
DNMT1	ENSG00000130816.10	771.42880	1014.54150	-0.39520	4.72180	4.03710	HepG2	SRSF9
DNMT1	ENSG00000130816.10	1490.39870	3154.00970	-1.08150	51.71340	50.18030	HepG2	SSB
DNMT1	ENSG00000130816.10	1341.60000	1973.96260	-0.55710	4.69850	3.12810	HepG2	STAU1
DNMT1	ENSG00000130816.10	758.57100	1609.82180	-1.08550	11.19740	8.92320	HepG2	SUB1
DNMT1	ENSG00000130816.10	1314.16690	1995.56240	-0.60260	7.98920	6.44900	HepG2	SUPT6H
DNMT1	ENSG00000130816.10	741.51890	2058.96620	-1.47340	15.66940	14.29390	HepG2	SUPV3L1
DNMT1	ENSG00000130816.10	1414.22400	1120.95750	0.33520	3.72090	3.08660	HepG2	TAF15
DNMT1	ENSG00000130816.10	1489.43330	3432.58980	-1.20450	30.03360	28.12540	HepG2	TARDBP
DNMT1	ENSG00000130816.10	747.24400	1379.92000	-0.88490	9.06570	7.47370	HepG2	TFIP11
DNMT1	ENSG00000130816.10	733.12490	1563.55140	-1.09270	26.86420	25.60330	HepG2	TIAL1
DNMT1	ENSG00000130816.10	1195.38530	1577.61620	-0.40030	3.72890	3.09560	HepG2	TRIM56
DNMT1	ENSG00000130816.10	1761.82900	2527.94470	-0.52090	5.61720	4.73830	HepG2	U2AF1
DNMT1	ENSG00000130816.10	1324.79520	3427.19390	-1.37130	5.69220	4.23150	HepG2	U2AF2
DNMT1	ENSG00000130816.10	1660.66380	2676.19740	-0.68840	21.62400	20.03790	HepG2	UPF1
DNMT1	ENSG00000130816.10	1311.65710	1884.80800	-0.52300	3.44620	2.31950	HepG2	UPF2
DNMT1	ENSG00000130816.10	2139.86650	2750.78410	-0.36230	5.81460	4.34830	HepG2	UTP18
DNMT1	ENSG00000130816.10	1547.51030	2026.83300	-0.38930	2.94880	2.20020	HepG2	XRN2
DNMT1	ENSG00000130816.10	1773.87450	2451.89630	-0.46700	11.57280	10.35740	HepG2	ZC3H8
DNMT1	ENSG00000130816.10	1497.57500	2943.31000	-0.97480	51.79390	50.19780	HepG2	ZNF622
DNMT1	ENSG00000130816.10	7395.44400	9377.53320	-0.34260	3.53810	2.13910	K562	ABCF1
DNMT1	ENSG00000130816.10	6271.11530	7071.17380	-0.17320	2.42850	1.89120	K562	AGGF1
DNMT1	ENSG00000130816.10	6255.58420	7769.90200	-0.31280	3.17810	2.11030	K562	AKAP8
DNMT1	ENSG00000130816.10	5873.58270	7357.81560	-0.32500	3.43080	2.70160	K562	AKAP8L
DNMT1	ENSG00000130816.10	3243.54670	7716.24310	-1.25030	36.76810	34.82950	K562	AQR
DNMT1	ENSG00000130816.10	6697.04280	7720.00400	-0.20510	2.41000	1.56260	K562	ATP5C1
DNMT1	ENSG00000130816.10	3531.80920	6023.78490	-0.77030	13.28700	11.31560	K562	BOP1
DNMT1	ENSG00000130816.10	5136.84960	6531.55820	-0.34650	2.87400	1.42690	K562	BUD13
DNMT1	ENSG00000130816.10	4526.35150	6404.91580	-0.50080	8.79590	7.38230	K562	CPSF6
DNMT1	ENSG00000130816.10	10986.14890	13103.46080	-0.25430	3.13940	2.10270	K562	CELF1
DNMT1	ENSG00000130816.10	3077.56010	3924.90960	-0.35090	4.09090	2.79220	K562	DDX3X
DNMT1	ENSG00000130816.10	2796.99150	4259.85360	-0.60690	8.66750	6.96880	K562	EFTUD2
DNMT1	ENSG00000130816.10	3746.36850	4311.05940	-0.20250	2.51480	1.37420	K562	EIF2S1
DNMT1	ENSG00000130816.10	6038.54360	6854.95120	-0.18290	2.13140	1.48570	K562	EIF2S2
DNMT1	ENSG00000130816.10	3455.08800	4560.27550	-0.40040	3.16830	2.05560	K562	EIF3D
DNMT1	ENSG00000130816.10	3835.52010	2814.95780	0.44620	8.08180	6.73000	K562	EIF3G
DNMT1	ENSG00000130816.10	2252.71710	4100.51870	-0.86410	17.95590	15.71080	K562	EIF4A3
DNMT1	ENSG00000130816.10	9202.00270	10657.07800	-0.21180	2.81880	1.87280	K562	EIF4G2
DNMT1	ENSG00000130816.10	5452.71170	6740.42230	-0.30590	2.81050	1.95480	K562	FIP1L1
DNMT1	ENSG00000130816.10	4754.49520	6517.03550	-0.45490	5.65880	4.42930	K562	FMR1
DNMT1	ENSG00000130816.10	3448.02550	5523.85600	-0.67990	9.62990	7.81390	K562	FTO
DNMT1	ENSG00000130816.10	2047.32560	2488.67470	-0.28160	2.71650	1.39170	K562	FUS
DNMT1	ENSG00000130816.10	5247.52070	4264.35960	0.29920	4.75020	3.98580	K562	FXR1
DNMT1	ENSG00000130816.10	1578.21210	2535.32170	-0.68390	6.27360	5.11150	K562	G3BP2
DNMT1	ENSG00000130816.10	6412.53960	7557.86530	-0.23710	3.00570	1.81650	K562	GLRX3
DNMT1	ENSG00000130816.10	3906.66890	6115.04170	-0.64640	11.66300	10.00840	K562	GPKOW
DNMT1	ENSG00000130816.10	5310.94330	9134.79130	-0.78240	19.10770	17.03940	K562	GRSF1
DNMT1	ENSG00000130816.10	6594.76720	10626.53460	-0.68830	3.94990	2.04640	K562	HNRNPAB
DNMT1	ENSG00000130816.10	3120.56800	4755.92070	-0.60790	11.27280	10.13640	K562	HNRNPC
DNMT1	ENSG00000130816.10	5659.79520	9138.94120	-0.69130	11.50000	9.90830	K562	HSPD1
DNMT1	ENSG00000130816.10	3096.73180	5221.68400	-0.75380	8.13390	6.43500	K562	KRR1
DNMT1	ENSG00000130816.10	4891.41410	5968.99550	-0.28720	2.84350	1.95330	K562	METAP2
DNMT1	ENSG00000130816.10	8444.44670	11359.41960	-0.42780	5.32410	3.76480	K562	MSI2
DNMT1	ENSG00000130816.10	6546.41930	7946.11530	-0.27950	5.79430	4.65320	K562	MTPAP
DNMT1	ENSG00000130816.10	3175.52390	4094.67310	-0.36680	4.97320	3.32020	K562	NCBP2
DNMT1	ENSG00000130816.10	7400.14440	8828.81650	-0.25470	8.33440	7.13730	K562	NSUN2
DNMT1	ENSG00000130816.10	5752.61850	7175.90610	-0.31890	2.45310	1.67110	K562	PCBP3
DNMT1	ENSG00000130816.10	4760.67040	5504.14620	-0.20940	2.04950	1.36040	K562	POLR2G
DNMT1	ENSG00000130816.10	5185.45400	7651.34290	-0.56120	7.99900	6.44070	K562	PPIG
DNMT1	ENSG00000130816.10	2686.92500	4145.34680	-0.62550	9.11960	7.75620	K562	PRPF8
DNMT1	ENSG00000130816.10	5107.87270	3741.71140	0.44890	6.71910	5.72100	K562	PTBP1
DNMT1	ENSG00000130816.10	8939.25200	11627.70440	-0.37930	4.62140	3.57000	K562	PUF60
DNMT1	ENSG00000130816.10	10250.98650	12367.69080	-0.27080	3.26150	2.09920	K562	PUM1
DNMT1	ENSG00000130816.10	9771.29220	12118.08960	-0.31050	5.48270	4.11140	K562	PUM2
DNMT1	ENSG00000130816.10	4617.61920	3891.16570	0.24680	2.43360	1.50800	K562	RCC2
DNMT1	ENSG00000130816.10	3005.90850	4221.96730	-0.49010	4.85930	3.77480	K562	RPS19
DNMT1	ENSG00000130816.10	6386.60990	8711.83510	-0.44790	10.76030	9.22380	K562	SF3A3
DNMT1	ENSG00000130816.10	3667.68920	5815.90110	-0.66510	8.37550	6.61630	K562	SF3B1
DNMT1	ENSG00000130816.10	1873.30600	2636.55520	-0.49310	7.70120	6.23270	K562	SF3B4
DNMT1	ENSG00000130816.10	8077.30640	8925.46740	-0.14410	2.33490	1.46600	K562	SRPK2
DNMT1	ENSG00000130816.10	5080.04940	3668.35900	0.46960	7.36210	6.21880	K562	SRSF1
DNMT1	ENSG00000130816.10	2581.26260	4012.63540	-0.63650	7.70560	5.95180	K562	SUPV3L1
DNMT1	ENSG00000130816.10	4339.65210	3580.88540	0.27720	2.62540	1.82940	K562	TIA1
DNMT1	ENSG00000130816.10	3298.86770	4101.47210	-0.31420	2.43670	1.56150	K562	TIAL1
DNMT1	ENSG00000130816.10	4546.97990	3515.10930	0.37120	2.77210	1.67890	K562	TRA2A
DNMT1	ENSG00000130816.10	1748.13610	2457.85050	-0.49160	4.26180	2.84420	K562	U2AF1
DNMT1	ENSG00000130816.10	1409.77190	2538.32640	-0.84840	20.00940	17.80410	K562	U2AF2
DNMT1	ENSG00000130816.10	3325.47120	4247.35880	-0.35300	3.24700	2.13970	K562	UCHL5
DNMT1	ENSG00000130816.10	7308.27700	9361.38380	-0.35720	9.50220	8.26830	K562	UPF1
DNMT1	ENSG00000130816.10	6541.69320	8211.07770	-0.32790	2.58510	1.42830	K562	UTP3
DNMT1	ENSG00000130816.10	5955.75600	8010.23650	-0.42760	6.28300	4.93180	K562	WDR3
DNMT1	ENSG00000130816.10	7213.80950	8329.74420	-0.20750	3.79130	2.81100	K562	WDR43
DNMT1	ENSG00000130816.10	6937.41750	8692.64220	-0.32540	3.45690	2.47400	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DNMT1 is not available on ENCORE database.

10 RBPs can affect the splicing of DNMT1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	DNMT1	ENSG00000130816.10	chr19	-	10290862	10290910	10287967	10288043	10291025	10291245	-0.14900	0.00070	0.01542	excluded	K562	SRSF1
SE	DNMT1	ENSG00000130816.10	chr19	-	10244892	10244983	10244215	10244377	10246411	10246528	-0.36700	0.00000	0.00000	excluded	HepG2	U2AF1
SE	DNMT1	ENSG00000130816.10	chr19	-	10290862	10290910	10287967	10288043	10291025	10291245	0.17700	0.00005	0.00847	included	K562	XRCC6
SE	DNMT1	ENSG00000130816.10	chr19	-	10290556	10290658	10287994	10288043	10290862	10290910	0.06500	0.00355	0.03509	included	K562	AQR
SE	DNMT1	ENSG00000130816.10	chr19	-	10244892	10244983	10244020	10244377	10246411	10246528	-0.06700	0.00087	0.03393	excluded	K562	TARDBP
SE	DNMT1	ENSG00000130816.10	chr19	-	10290862	10290910	10287967	10288043	10291025	10291205	-0.12300	0.00035	0.01669	excluded	K562	HNRNPU
SE	DNMT1	ENSG00000130816.10	chr19	-	10290862	10290910	10287967	10288043	10291025	10291245	0.23100	0.00021	0.04945	included	HepG2	XRCC6
SE	DNMT1	ENSG00000130816.10	chr19	-	10290862	10290910	10287967	10288043	10291025	10291245	0.18800	0.00013	0.00351	included	K562	HNRNPC
A3SS	DNMT1	ENSG00000130816.10	chr19	-	10250351	10250525	10250351	10250493	10250721	10250923	0.09900	0.00000	0.00104	longer	K562	EFTUD2
A3SS	DNMT1	ENSG00000130816.10	chr19	-	10286215	10286452	10286215	10286294	10287967	10288043	0.07800	0.00000	0.00011	longer	K562	U2AF2
A3SS	DNMT1	ENSG00000130816.10	chr19	-	10250351	10250525	10250351	10250493	10250721	10251004	0.08300	0.00209	0.06789	longer	K562	U2AF2
A3SS	DNMT1	ENSG00000130816.10	chr19	-	10246796	10247034	10246796	10246963	10247760	10247956	0.14400	0.00000	0.00000	longer	K562	AQR
A3SS	DNMT1	ENSG00000130816.10	chr19	-	10244215	10244432	10244215	10244377	10244892	10244983	0.06100	0.00000	0.00000	longer	K562	AQR
A3SS	DNMT1	ENSG00000130816.10	chr19	-	10251780	10251880	10251780	10251865	10252703	10252896	0.05100	0.00117	0.05472	longer	K562	PUS1
A3SS	DNMT1	ENSG00000130816.10	chr19	-	10260528	10260721	10260528	10260644	10262073	10262373	0.05900	0.00003	0.00210	longer	K562	PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DNMT1

General Information

Functions

Localization

Domains (AlphaFold: DNMT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DNMT1 is not avaliable on ENCORE database.

36 proteins are bound to DNMT1 RNA:

eCLIP assay for DNMT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DNMT1 is not available on ENCORE database.

134 RBPs can affect the gene expression of DNMT1 :

The Knockdown/knockout RNA-Seq assay for DNMT1 is not available on ENCORE database.

10 RBPs can affect the splicing of DNMT1 :

The Knockdown/knockout RNA-Seq assay for DNMT1 is not avaliable on ENCORE database.