TMCC1

General Information

Gene Name       : TMCC1
Gene ID             : ENSG00000172765.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMCC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMCC1ENSG00000172765.1712.149.4710.80ENCSR000AEF
HepG2TMCC1ENSG00000172765.1742.8866.6354.75ENCSR985KAT
K562TMCC1ENSG00000172765.173.443.263.35ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMCC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMCC1 RNA is bound by 23 proteins.  







eCLIP assay for TMCC1 is not avaliable on ENCORE database.





23 proteins are bound to TMCC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3129369940129370032-3'-UTR,intron-Distal,intron-Proximal3.209675.15343HepG2PABPN1
chr3129369405129369469-3'-UTR,intron-Distal5.112848.61853HepG2TIAL1
chr3129373843129373915-3'-UTR,CDS,intron-Distal3.7007329.50920HepG2BCLAF1
chr3129373889129373963-3'-UTR,CDS,intron-Distal,intron-Proximal3.2886813.14712HepG2AQR
chr3129369805129369866-3'-UTR,intron-Distal4.494068.14334HepG2RBM15
chr3129370041129370097-3'-UTR,intron-Distal4.082505.76695HepG2RBM15
chr3129370249129370326-3'-UTR,intron-Distal3.309335.88439HepG2RBM15
chr3129369414129369469-3'-UTR,intron-Distal3.662488.00138HepG2FUBP3
chr3129370276129370341-3'-UTR,CDS,intron-Distal3.766087.07289HepG2LIN28B
chr3129369297129369390-3'-UTR,intron-Distal4.253604.08455HepG2CSTF2
chr3129551625129551656-3'-UTR,5'-UTR,intron-Distal3.337623.27569HepG2BCLAF1
chr3129369546129369589-3'-UTR,intron-Distal3.297803.07984HepG2FUBP3
chr3129369417129369466-3'-UTR,intron-Distal5.245318.16476HepG2TIA1
chr3129612351129612405-5'-UTR,intron-Distal,intron-Proximal5.0900819.45096HepG2PRPF4
chr3129612340129612404-5'-UTR,intron-Distal,intron-Proximal3.9468611.59672K562GTF2F1
chr3129612364129612410-5'-UTR,intron-Distal,intron-Proximal3.8979611.63473HepG2FAM120A
chr3129375413129375601-5'-UTR,intron-Distal,intron-Proximal3.204879.31830HepG2AQR
chr3129612350129612402-5'-UTR,intron-Distal,intron-Proximal4.141343.60290K562AKAP8L
chr3129370607129370740-CDS,intron-Distal3.8978313.61011HepG2AQR
chr3129373808129373817-CDS,intron-Distal,intron-Proximal3.8241116.33569HepG2BCLAF1
chr3129373817129373843-CDS,intron-Distal4.0631223.38261HepG2BCLAF1
chr3129370348129370399-CDS,intron-Distal3.202537.78073HepG2RBM15
chr3129389422129389455-CDS,intron-Distal3.469143.87469HepG2BCLAF1
chr3129370436129370485-CDS,intron-Distal5.380019.29307HepG2RBM15
chr3129370602129370687-CDS,intron-Distal4.328507.62584HepG2BUD13
chr3129374724129374807-intron-Distal3.010164.54387HepG2PTBP1
chr3129535152129535212-intron-Distal3.953773.79098HepG2SUGP2
chr3129500608129500694-intron-Distal3.770354.09242HepG2QKI
chr3129393288129393402-intron-Distal3.851333.30286HepG2PTBP1
chr3129534370129534428-intron-Distal4.167983.89080K562EXOSC5
chr3129495276129495379-intron-Distal4.582013.74583HepG2PTBP1
chr3129525623129525753-intron-Distal4.214826.57428HepG2PTBP1
chr3129546318129546517-intron-Distal,intron-Proximal3.228834.13620K562KHSRP
chr3129507696129507811-intron-Distal6.5088721.16199HepG2QKI
chr3129535386129535475-intron-Distal3.553078.06806HepG2PCBP2
chr3129551111129551178-intron-Distal4.152053.09122HepG2PTBP1
chr3129387244129387340-intron-Distal4.333803.80778HepG2QKI
chr3129500963129501028-intron-Distal4.201153.79098HepG2SUGP2
chr3129404575129404736-intron-Distal3.410484.14896HepG2HNRNPM
chr3129599366129599425-intron-Distal,intron-Proximal4.701345.47569HepG2U2AF2
chr3129534355129534428-intron-Distal3.863836.25586HepG2SUGP2
chr3129526087129526172-intron-Distal4.048223.98095HepG2HNRNPL
chr3129501109129501180-intron-Distal3.242793.69184HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMCC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMCC1 is not available on ENCORE database.

  • 146 RBPs can affect the levels of TMCC1.  








The Knockdown/knockout RNA-Seq assay for TMCC1 is not available on ENCORE database.





146 RBPs can affect the gene expression of TMCC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMCC1ENSG00000172765.121179.775602147.34650-0.864008.394205.59310HepG2AARS
TMCC1ENSG00000172765.121665.256804062.56460-1.2866013.2967011.49160HepG2ABCF1
TMCC1ENSG00000172765.121862.596903192.97610-0.7776012.2642010.38010HepG2ADAR
TMCC1ENSG00000172765.122222.985105881.12550-1.4036029.5271028.01720HepG2AKAP1
TMCC1ENSG00000172765.121863.525404934.52330-1.4049031.1386028.14610HepG2AKAP8
TMCC1ENSG00000172765.124415.626303466.482700.349006.509805.52620HepG2AUH
TMCC1ENSG00000172765.121310.428002190.86980-0.741507.887506.25920HepG2BCCIP
TMCC1ENSG00000172765.122737.312001903.722800.523805.173203.98010HepG2BCLAF1
TMCC1ENSG00000172765.121766.442801435.855800.298802.224201.68210HepG2BOP1
TMCC1ENSG00000172765.124832.000403455.598700.483608.254707.02410HepG2CALR
TMCC1ENSG00000172765.125770.988504623.110100.319902.664901.90550HepG2CIRBP
TMCC1ENSG00000172765.121894.515903244.18860-0.7760034.0332032.29600HepG2CKAP4
TMCC1ENSG00000172765.122100.393103689.31000-0.812706.801205.60350HepG2CNOT7
TMCC1ENSG00000172765.122065.953001318.147200.648208.205907.07370HepG2CPSF6
TMCC1ENSG00000172765.124985.918403344.250700.576109.103307.22840HepG2CPSF7
TMCC1ENSG00000172765.123921.839203274.301600.260203.274702.16600HepG2YBX3
TMCC1ENSG00000172765.12394.608401353.32550-1.7780043.7666040.72360HepG2CSTF2
TMCC1ENSG00000172765.123150.319804124.26140-0.388607.224806.27850HepG2CELF1
TMCC1ENSG00000172765.125932.894304434.513300.4199014.0357012.58470HepG2DAZAP1
TMCC1ENSG00000172765.121584.083203001.18830-0.9219042.2541040.04290HepG2DDX19B
TMCC1ENSG00000172765.124113.147103278.973900.326905.048103.51740HepG2DDX1
TMCC1ENSG00000172765.121959.913702689.69700-0.456706.180104.82270HepG2DDX24
TMCC1ENSG00000172765.124661.549705633.48290-0.273201.905401.37660HepG2DDX3X
TMCC1ENSG00000172765.122937.047302154.065300.447203.626402.75520HepG2DDX55
TMCC1ENSG00000172765.123269.817701496.868401.127207.211105.67440HepG2DDX59
TMCC1ENSG00000172765.124571.422003684.547200.311102.685501.68760HepG2DDX5
TMCC1ENSG00000172765.128441.146404839.726700.8024010.984509.84800HepG2DDX6
TMCC1ENSG00000172765.121470.364103104.67370-1.0783046.5171044.62470HepG2DKC1
TMCC1ENSG00000172765.122757.506503186.66050-0.208703.333202.62990HepG2DNAJC2
TMCC1ENSG00000172765.12657.289103021.23170-2.2005077.4111074.21770HepG2EEF2
TMCC1ENSG00000172765.121634.263702518.68790-0.624006.510104.80570HepG2EFTUD2
TMCC1ENSG00000172765.123444.791004652.10170-0.433504.106303.39290HepG2EIF2S1
TMCC1ENSG00000172765.121614.754403080.78380-0.9320012.5776010.33090HepG2EIF2S2
TMCC1ENSG00000172765.121832.277702452.59070-0.420703.410602.41280HepG2EIF3D
TMCC1ENSG00000172765.121645.681902595.40400-0.6573011.9243010.00250HepG2EIF3G
TMCC1ENSG00000172765.123230.826405140.90390-0.670107.464506.41370HepG2EIF4A3
TMCC1ENSG00000172765.121527.101405005.80240-1.7128033.1729030.98880HepG2EIF4B
TMCC1ENSG00000172765.123434.175804190.94680-0.287302.360601.60630HepG2EIF4G2
TMCC1ENSG00000172765.122283.158003518.33920-0.623906.769405.15680HepG2ESF1
TMCC1ENSG00000172765.121444.489203980.03860-1.4622090.7702088.27270HepG2ETF1
TMCC1ENSG00000172765.121098.510202458.83770-1.1624022.7673019.35990HepG2EXOSC9
TMCC1ENSG00000172765.12967.044302191.95980-1.1806034.6504030.99980HepG2FAM120A
TMCC1ENSG00000172765.121500.145302619.01890-0.8039015.5681013.28100HepG2FASTKD2
TMCC1ENSG00000172765.122329.461804101.93260-0.816307.837006.61290HepG2FIP1L1
TMCC1ENSG00000172765.122426.551301792.956000.436503.681702.22530HepG2FKBP4
TMCC1ENSG00000172765.12747.187101320.50350-0.821503.645602.47440HepG2FTO
TMCC1ENSG00000172765.121727.018403470.56170-1.0069011.628009.56910HepG2FUS
TMCC1ENSG00000172765.122083.620405187.60810-1.3160031.6266029.60700HepG2FXR1
TMCC1ENSG00000172765.122215.849404811.92450-1.1188020.8683019.12080HepG2G3BP1
TMCC1ENSG00000172765.122299.693305108.92250-1.1516025.7213023.17250HepG2G3BP2
TMCC1ENSG00000172765.12943.502102183.72230-1.2107025.6361023.30940HepG2GEMIN5
TMCC1ENSG00000172765.121676.385403415.51250-1.0267011.618109.37320HepG2GRSF1
TMCC1ENSG00000172765.122332.974203269.88860-0.487102.927301.30160HepG2GTF2F1
TMCC1ENSG00000172765.121809.713603121.20430-0.786307.595705.23830HepG2HNRNPA0
TMCC1ENSG00000172765.12530.843603246.06640-2.61230124.00030121.16420HepG2HNRNPA1
TMCC1ENSG00000172765.121929.795503047.74060-0.659306.210304.04950HepG2HNRNPAB
TMCC1ENSG00000172765.122918.143003610.57790-0.307202.878602.17280HepG2HNRNPC
TMCC1ENSG00000172765.121973.017603195.77210-0.695806.235403.98520HepG2HNRNPD
TMCC1ENSG00000172765.122499.487101425.853900.8097012.1357010.93550HepG2HNRNPLL
TMCC1ENSG00000172765.122253.850402829.37380-0.328102.366001.48560HepG2HNRNPM
TMCC1ENSG00000172765.121249.495303586.71210-1.5213097.4225094.54790HepG2HNRNPU
TMCC1ENSG00000172765.123110.811905373.96200-0.788709.180707.00700HepG2HSPD1
TMCC1ENSG00000172765.122282.173304590.57180-1.008305.523204.15920HepG2IGF2BP3
TMCC1ENSG00000172765.122514.562203596.93740-0.516503.502601.98770HepG2ILF3
TMCC1ENSG00000172765.121646.022703516.91950-1.0953016.1446013.13800HepG2KHDRBS1
TMCC1ENSG00000172765.123431.640704919.83290-0.519704.225502.96320HepG2KHSRP
TMCC1ENSG00000172765.123766.760502966.319200.344608.480306.77340HepG2KIF1C
TMCC1ENSG00000172765.122420.979805369.24500-1.1491010.574408.22150HepG2KRR1
TMCC1ENSG00000172765.122461.473105638.70150-1.1958019.0323016.84600HepG2LARP4
TMCC1ENSG00000172765.121057.835402554.21240-1.2718017.9557015.35390HepG2LARP7
TMCC1ENSG00000172765.12746.906802682.71670-1.8447025.6429022.59360HepG2LIN28B
TMCC1ENSG00000172765.121182.309702563.11130-1.1163012.783509.49760HepG2LSM11
TMCC1ENSG00000172765.121338.149305189.42210-1.9553061.8758059.01580HepG2MAGOH
TMCC1ENSG00000172765.121201.927202163.59150-0.848108.067005.50800HepG2MARK2
TMCC1ENSG00000172765.121268.655505218.36070-2.0403059.7528057.13870HepG2MATR3
TMCC1ENSG00000172765.121299.704802566.87440-0.9818010.545908.61740HepG2METAP2
TMCC1ENSG00000172765.122258.388101454.464700.634704.424903.17940HepG2MTPAP
TMCC1ENSG00000172765.123849.351102786.931200.465805.624703.90450HepG2NAA15
TMCC1ENSG00000172765.122829.112905341.19620-0.9168015.2240013.81930HepG2NCBP2
TMCC1ENSG00000172765.123317.542505092.13430-0.618204.978903.06110HepG2NKRF
TMCC1ENSG00000172765.123678.213004397.25860-0.257602.941102.15500HepG2NOL12
TMCC1ENSG00000172765.12971.987901977.91810-1.025008.073006.17130HepG2NONO
TMCC1ENSG00000172765.121950.009301264.384800.624907.710806.50550HepG2NSUN2
TMCC1ENSG00000172765.12567.800901833.52430-1.6912021.1697017.83120HepG2PA2G4
TMCC1ENSG00000172765.125724.792203372.508100.763305.511504.22860HepG2PABPC1
TMCC1ENSG00000172765.121684.421503550.31950-1.0757049.0449046.43530HepG2PARN
TMCC1ENSG00000172765.123038.374804882.51020-0.6843024.5935023.08410HepG2PCBP1
TMCC1ENSG00000172765.121772.721903285.52930-0.890208.739807.01190HepG2PCBP2
TMCC1ENSG00000172765.121081.932102028.22720-0.9066021.6200018.73980HepG2PKM
TMCC1ENSG00000172765.122149.707403199.07300-0.5735012.6477011.13780HepG2PPIL4
TMCC1ENSG00000172765.123092.298302444.269400.339205.728204.65820HepG2PRPF4
TMCC1ENSG00000172765.121623.324903454.03270-1.089309.629807.50610HepG2PRPF6
TMCC1ENSG00000172765.12424.775401661.77080-1.9679049.3602046.63660HepG2PRPF8
TMCC1ENSG00000172765.122428.248104968.13770-1.0328051.4593049.74430HepG2PTBP1
TMCC1ENSG00000172765.121828.367704197.59030-1.1990035.9617034.11710HepG2PUF60
TMCC1ENSG00000172765.121601.079604455.95320-1.47670130.11620127.48750HepG2PUM1
TMCC1ENSG00000172765.121996.607304452.68240-1.1571032.9981030.87570HepG2PUM2
TMCC1ENSG00000172765.122536.054703305.37180-0.382208.548207.56590HepG2PUS1
TMCC1ENSG00000172765.125014.429803171.010900.661004.298903.43030HepG2RAVER1
TMCC1ENSG00000172765.121466.524701997.18480-0.445603.458601.51700HepG2RBM14
TMCC1ENSG00000172765.126708.957904628.432400.5355011.014309.47820HepG2RBM15
TMCC1ENSG00000172765.121898.884004633.88740-1.287104.746302.29420HepG2RBM17
TMCC1ENSG00000172765.121426.877403326.56480-1.2212031.5176030.14320HepG2RBM22
TMCC1ENSG00000172765.121165.663003079.86400-1.4017015.4651013.16370HepG2RBM27
TMCC1ENSG00000172765.121502.725405529.05940-1.87950155.46760153.05330HepG2NELFE
TMCC1ENSG00000172765.121776.935005149.56900-1.53510110.19610107.57090HepG2RECQL
TMCC1ENSG00000172765.121242.313801590.13370-0.356103.427002.67910HepG2RPLP0
TMCC1ENSG00000172765.12350.515402386.46500-2.76730135.90150132.81500HepG2RPS19
TMCC1ENSG00000172765.121238.452202840.62880-1.1977013.2116011.56380HepG2RPS2
TMCC1ENSG00000172765.121557.207103706.09280-1.2509018.6696016.69350HepG2RPS3A
TMCC1ENSG00000172765.121079.305801643.84340-0.607005.507504.43350HepG2RRP9
TMCC1ENSG00000172765.124242.672803194.167500.4094010.995309.84370HepG2SAFB2
TMCC1ENSG00000172765.121634.308702395.21130-0.551506.000804.63170HepG2SERBP1
TMCC1ENSG00000172765.121369.976304481.28210-1.709806.566304.32930HepG2SF1
TMCC1ENSG00000172765.122048.323203934.66350-0.9418011.249009.82680HepG2SF3A3
TMCC1ENSG00000172765.123219.859701411.240001.1899029.0267027.01640HepG2SF3B1
TMCC1ENSG00000172765.121885.892005172.47070-1.4556099.1268096.55300HepG2SF3B4
TMCC1ENSG00000172765.121801.467004342.92350-1.269504.558702.62440HepG2SFPQ
TMCC1ENSG00000172765.121756.952003725.00940-1.0842068.9547066.60380HepG2SMN1
TMCC1ENSG00000172765.12600.347305398.94040-3.1688099999.9999999999.99999HepG2SRSF1
TMCC1ENSG00000172765.122385.831801518.708600.651506.012804.49390HepG2SRSF3
TMCC1ENSG00000172765.122265.933904144.53990-0.8711027.9292026.22290HepG2SRSF5
TMCC1ENSG00000172765.125905.659304392.326200.427005.453404.72350HepG2SRSF9
TMCC1ENSG00000172765.12878.706303262.11670-1.89240136.36370134.25510HepG2SSB
TMCC1ENSG00000172765.123985.534505353.09980-0.425603.479002.05630HepG2SSRP1
TMCC1ENSG00000172765.122420.887003224.39540-0.413502.743801.64760HepG2STIP1
TMCC1ENSG00000172765.124479.258202963.277000.596004.456102.91900HepG2SUB1
TMCC1ENSG00000172765.121773.712504713.45720-1.4100084.3382081.87980HepG2SUCLG1
TMCC1ENSG00000172765.124063.782802768.754100.553506.630605.21650HepG2SUPT6H
TMCC1ENSG00000172765.12959.952602144.36300-1.1595018.4643016.98410HepG2SUPV3L1
TMCC1ENSG00000172765.123136.893904852.78030-0.6295016.4193015.21850HepG2TAF15
TMCC1ENSG00000172765.122008.082301390.104500.530505.887104.88750HepG2TARDBP
TMCC1ENSG00000172765.121628.949805258.00110-1.6906016.3867014.06910HepG2TBRG4
TMCC1ENSG00000172765.122382.288804459.04170-0.9044024.1163021.70100HepG2TIA1
TMCC1ENSG00000172765.12582.971603485.42660-2.57980158.26710155.52270HepG2TIAL1
TMCC1ENSG00000172765.121263.634501948.88540-0.625105.588103.42130HepG2TROVE2
TMCC1ENSG00000172765.122651.034404100.91010-0.6294011.933309.92130HepG2TUFM
TMCC1ENSG00000172765.12810.293301266.75780-0.644606.564005.38370HepG2UCHL5
TMCC1ENSG00000172765.122423.162003489.44560-0.5261015.1308013.74970HepG2UPF1
TMCC1ENSG00000172765.122535.334403586.65730-0.500503.565202.39290HepG2UTP18
TMCC1ENSG00000172765.122287.235203486.88570-0.608304.769503.39880HepG2XRCC6
TMCC1ENSG00000172765.121277.231402110.88950-0.724808.974207.68610HepG2XRN2
TMCC1ENSG00000172765.121199.697302412.18190-1.0077044.9525042.92370HepG2ZC3H8
TMCC1ENSG00000172765.127052.633703837.721300.8778062.6839060.97860HepG2ZNF622
TMCC1ENSG00000172765.12200.46640294.62930-0.555502.994801.98000K562CELF1
TMCC1ENSG00000172765.1296.21430152.35780-0.663102.534201.52720K562HNRNPL
TMCC1ENSG00000172765.1294.84500147.78270-0.639802.446001.60560K562HNRNPU
TMCC1ENSG00000172765.1291.37850142.87970-0.644902.054401.57310K562PUS1
TMCC1ENSG00000172765.12121.1755077.825400.638702.161301.45140K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMCC1 is not available on ENCORE database.





9 RBPs can affect the splicing of TMCC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMCC1ENSG00000172765.12chr3-129599151129599402129567188129567255129612336129612394-0.584000.000010.01207excludedK562UTP3
SETMCC1ENSG00000172765.12chr3-1295760921295762481295671851295672551295991511295994020.287000.005700.05883includedHepG2U2AF2
SETMCC1ENSG00000172765.12chr3-129599151129599402129576090129576248129612336129612394-0.205000.003070.03120excludedK562AQR
SETMCC1ENSG00000172765.12chr3-129576096129576248129567185129567255129599151129599402-0.167000.003380.08345excludedK562UTP18
SETMCC1ENSG00000172765.12chr3-1295760921295762481295671851295672551295991511295994020.351000.002440.04097includedK562U2AF2
SETMCC1ENSG00000172765.12chr3-129576092129576248129567185129567255129599151129599402-0.268000.002590.05723excludedK562AGGF1
MXETMCC1ENSG00000172765.12chr3-1295760921295762481295991511295994021295671881295672551296123361296124190.351000.001100.036531includedK562PTBP1
MXETMCC1ENSG00000172765.12chr3-129576092129576248129599151129599402129567188129567255129612336129612419-0.443000.002890.022722includedK562AQR
MXETMCC1ENSG00000172765.12chr3-129576092129576248129599151129599402129567188129567255129612336129612419-0.391000.002000.049802includedK562SBDS
MXETMCC1ENSG00000172765.12chr3-129576092129576248129599151129599402129567188129567255129612336129612419-0.474000.001150.074282includedK562RBFOX2
MXETMCC1ENSG00000172765.12chr3-1295760921295762481295991511295994021295671881295672551296123361296124190.343000.002090.081701includedK562IGF2BP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMCC1 is not avaliable on ENCORE database.