SCARB2

General Information

Gene Name       : SCARB2
Gene ID             : ENSG00000138760.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCARB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCARB2ENSG00000138760.96.496.626.55ENCSR000AEF
HepG2SCARB2ENSG00000138760.933.5235.8234.67ENCSR985KAT
K562SCARB2ENSG00000138760.912.2412.7012.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCARB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCARB2 RNA is bound by 10 proteins.  







eCLIP assay for SCARB2 is not avaliable on ENCORE database.





10 proteins are bound to SCARB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr47708221077082324-3'-UTR,intron-Distal4.854377.30074K562IGF2BP1
chr47708173677081817-3'-UTR,intron-Distal4.906954.90799K562UPF1
chr47708201877082050-3'-UTR,intron-Distal3.310633.37083K562UPF1
chr47708003077080105-3'-UTR,intron-Distal4.394025.17229HepG2UPF1
chr47708196877082011-3'-UTR,intron-Distal4.371413.69433K562UPF1
chr47708254177082607-3'-UTR,intron-Distal5.4622817.84489HepG2FUBP3
chr47708029177080460-3'-UTR,intron-Distal3.857817.33071HepG2UPF1
chr47708220277082254-3'-UTR,intron-Distal4.207803.74540HepG2IGF2BP1
chr47708274477082820-3'-UTR,intron-Distal4.639464.66187HepG2SUB1
chr47708277177082873-3'-UTR,CDS,intron-Distal3.223773.27682HepG2LARP4
chr47708050177080569-3'-UTR,intron-Distal3.397645.05294K562UPF1
chr47708173777081813-3'-UTR,intron-Distal3.334033.20150HepG2AKAP1
chr47708255277082605-3'-UTR,intron-Distal3.963693.64119HepG2UPF1
chr47713477177134912-5'-UTR,intron-Distal,intron-Proximal5.2750859.39729HepG2DDX3X
chr47713492377134988-5'-UTR,intron-Distal5.8362018.21641HepG2DDX3X
chr47713470377134757-5'-UTR,intron-Distal,intron-Proximal4.8014328.67605HepG2DDX3X
chr47709696277097034-CDS,intron-Distal4.093544.34615K562LIN28B
chr47713460977134686-CDS,intron-Distal4.4430530.37297HepG2DDX3X
chr47710079577100858-CDS,intron-Distal4.318266.76541HepG2SND1
chr47713461777134682-CDS,intron-Distal5.728557.96752HepG2RPS3
chr47708437677084526-CDS,intron-Distal,intron-Proximal3.283666.63492HepG2SND1
chr47710067977100749-CDS,intron-Distal3.960153.31432HepG2SND1
chr47711686977116989-CDS,intron-Distal3.043634.31260K562SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCARB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCARB2 is not available on ENCORE database.

  • 129 RBPs can affect the levels of SCARB2.  








The Knockdown/knockout RNA-Seq assay for SCARB2 is not available on ENCORE database.





129 RBPs can affect the gene expression of SCARB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCARB2ENSG00000138760.42751.650202168.807900.343303.259002.10200HepG2AATF
SCARB2ENSG00000138760.43244.182602632.623900.301305.553804.75210HepG2ACO1
SCARB2ENSG00000138760.41864.195002441.69320-0.389303.451102.34800HepG2ADAR
SCARB2ENSG00000138760.47191.332704596.271300.645707.290506.47160HepG2AKAP1
SCARB2ENSG00000138760.43263.582102644.895500.303104.855703.86420HepG2AKAP8L
SCARB2ENSG00000138760.45784.399203580.346400.6920025.3276023.63280HepG2AUH
SCARB2ENSG00000138760.42793.026201981.971200.494806.075805.22810HepG2BOP1
SCARB2ENSG00000138760.42745.528902094.087000.390704.116302.62750HepG2BUD13
SCARB2ENSG00000138760.44159.610802464.595300.7550018.1133016.46130HepG2CALR
SCARB2ENSG00000138760.45336.123703630.086400.555704.747603.45560HepG2CCAR1
SCARB2ENSG00000138760.45021.540803076.181600.7069022.4277020.95680HepG2CELF1
SCARB2ENSG00000138760.41917.602702434.74620-0.344506.592305.38980HepG2DDX19B
SCARB2ENSG00000138760.41353.972502507.41180-0.8890025.1571022.32020HepG2DDX1
SCARB2ENSG00000138760.43352.403802392.796200.486406.203605.23530HepG2DDX21
SCARB2ENSG00000138760.45630.674604403.001100.354702.934902.29280HepG2DDX3X
SCARB2ENSG00000138760.43075.309602213.098300.474604.514603.55140HepG2DDX55
SCARB2ENSG00000138760.44038.822202066.266700.966807.981606.36820HepG2DDX59
SCARB2ENSG00000138760.43056.304502479.559100.301602.411001.46440HepG2DDX5
SCARB2ENSG00000138760.41100.309702436.97310-1.1472059.7134056.99930HepG2DNAJC2
SCARB2ENSG00000138760.42954.365202203.454400.423002.922001.77980HepG2AGO1
SCARB2ENSG00000138760.45738.446703635.995900.658208.812107.79250HepG2EIF2S1
SCARB2ENSG00000138760.42210.988504018.33950-0.8619011.5893010.30840HepG2EIF4A3
SCARB2ENSG00000138760.44230.083003125.998600.436304.629503.59110HepG2EIF4G2
SCARB2ENSG00000138760.44956.749104110.509600.270004.642403.90080HepG2ETF1
SCARB2ENSG00000138760.44745.610302822.504300.749509.379708.07310HepG2FIP1L1
SCARB2ENSG00000138760.43178.655502184.137100.541307.992906.69400HepG2FUBP3
SCARB2ENSG00000138760.42439.750304053.92260-0.7326010.439209.17950HepG2FXR1
SCARB2ENSG00000138760.44983.417803760.825200.406003.431802.69490HepG2G3BP1
SCARB2ENSG00000138760.43887.812402566.830800.598908.073006.33020HepG2GNB2L1
SCARB2ENSG00000138760.4917.777902062.73260-1.1683019.3048017.77350HepG2GPKOW
SCARB2ENSG00000138760.43219.171102513.331300.357006.644505.21400HepG2HDGF
SCARB2ENSG00000138760.44034.542703039.923600.408308.333206.87200HepG2HNRNPA2B1
SCARB2ENSG00000138760.41994.275903036.50820-0.606505.384803.38600HepG2HNRNPAB
SCARB2ENSG00000138760.42397.702003048.53810-0.346505.577804.60190HepG2HNRNPF
SCARB2ENSG00000138760.42452.567803807.66840-0.634609.235308.01970HepG2HNRNPK
SCARB2ENSG00000138760.43104.670401968.495900.657208.882507.82520HepG2HNRNPLL
SCARB2ENSG00000138760.42221.587503001.95880-0.434305.971204.94930HepG2IGF2BP1
SCARB2ENSG00000138760.42245.943602801.62990-0.318906.809405.70990HepG2ILF2
SCARB2ENSG00000138760.42821.987703845.01330-0.446303.145802.06820HepG2KHSRP
SCARB2ENSG00000138760.42120.023504055.33610-0.9357015.6163014.12090HepG2MAGOH
SCARB2ENSG00000138760.42705.241401995.663300.438802.510001.50430HepG2METAP2
SCARB2ENSG00000138760.43472.158102284.121700.604109.976808.53630HepG2MSI2
SCARB2ENSG00000138760.42761.443401918.040200.525707.117405.19310HepG2NAA15
SCARB2ENSG00000138760.44276.053803280.070200.382505.654904.57220HepG2NOL12
SCARB2ENSG00000138760.42178.590601745.385200.319702.653801.92060HepG2NSUN2
SCARB2ENSG00000138760.43153.253202714.843500.215902.689101.85160HepG2PARN
SCARB2ENSG00000138760.42129.157903711.24210-0.8016030.2002028.56280HepG2PCBP1
SCARB2ENSG00000138760.43915.964902836.115800.465402.828101.77600HepG2PCBP2
SCARB2ENSG00000138760.41751.948302446.31500-0.481608.484507.24270HepG2PPIL4
SCARB2ENSG00000138760.43785.303401707.764601.1482024.4627022.43610HepG2PRPF8
SCARB2ENSG00000138760.42942.801703776.33260-0.359806.713205.93460HepG2PTBP1
SCARB2ENSG00000138760.44638.904103131.051600.567009.014508.02270HepG2PUF60
SCARB2ENSG00000138760.44460.584203323.676400.4244013.4894012.38770HepG2PUM1
SCARB2ENSG00000138760.44673.948903321.294100.492808.595007.44240HepG2PUM2
SCARB2ENSG00000138760.42213.541702681.48110-0.276704.446803.70120HepG2PUS1
SCARB2ENSG00000138760.44980.409504089.850700.284103.648402.94590HepG2QKI
SCARB2ENSG00000138760.42660.156103435.66860-0.369105.627204.95440HepG2RBM22
SCARB2ENSG00000138760.41733.696702461.63260-0.505802.643901.60990HepG2RCC2
SCARB2ENSG00000138760.43044.731104202.69140-0.4650011.1589010.20980HepG2NELFE
SCARB2ENSG00000138760.42974.019603914.24360-0.396308.543207.54920HepG2RECQL
SCARB2ENSG00000138760.42232.470201855.329300.266902.341601.77070HepG2RPS19
SCARB2ENSG00000138760.42843.847503692.74270-0.376802.277601.55050HepG2RPS3A
SCARB2ENSG00000138760.43272.627801689.385600.9539015.1568013.57870HepG2RRP9
SCARB2ENSG00000138760.42159.793802442.53710-0.177502.099201.52540HepG2SAFB2
SCARB2ENSG00000138760.42289.861901862.196500.298202.242401.39220HepG2SERBP1
SCARB2ENSG00000138760.44020.992302754.563700.545604.187703.34850HepG2SF3A3
SCARB2ENSG00000138760.42381.931601948.472000.289702.369001.71360HepG2SF3B1
SCARB2ENSG00000138760.42642.771303002.04020-0.183902.674701.98250HepG2SLBP
SCARB2ENSG00000138760.44992.101702167.998901.203209.433208.00000HepG2SNRNP70
SCARB2ENSG00000138760.43251.407604103.78530-0.335906.991806.32310HepG2SRSF1
SCARB2ENSG00000138760.42867.990002096.420500.452003.353002.24070HepG2SRSF3
SCARB2ENSG00000138760.43753.700503091.369700.280004.292003.54250HepG2SRSF5
SCARB2ENSG00000138760.42579.340202995.02210-0.215602.426001.77120HepG2SRSF7
SCARB2ENSG00000138760.44332.173603338.651100.375708.592607.71530HepG2SRSF9
SCARB2ENSG00000138760.42790.367303369.35870-0.272003.530702.96760HepG2SSB
SCARB2ENSG00000138760.43805.610502557.837500.573104.153302.66490HepG2SUB1
SCARB2ENSG00000138760.43069.079501905.694000.6874012.4193010.54960HepG2SUPT6H
SCARB2ENSG00000138760.45386.367902203.261301.2896028.4715026.72080HepG2SUPV3L1
SCARB2ENSG00000138760.46411.193103688.652600.7974027.5613026.02510HepG2TAF15
SCARB2ENSG00000138760.43636.230401918.444400.9224018.8566017.27430HepG2TARDBP
SCARB2ENSG00000138760.42092.921501476.863900.502905.044003.75830HepG2TFIP11
SCARB2ENSG00000138760.44454.810703389.358300.394305.415704.25820HepG2TIA1
SCARB2ENSG00000138760.42097.220302665.05950-0.345704.299203.70420HepG2TIAL1
SCARB2ENSG00000138760.42083.250902688.92370-0.368206.659405.85190HepG2TRIM56
SCARB2ENSG00000138760.4591.431101301.64090-1.1380015.9695014.18360HepG2UCHL5
SCARB2ENSG00000138760.43848.481902442.877800.6556023.2300021.59430HepG2UPF1
SCARB2ENSG00000138760.42982.973102510.929800.248403.108602.00510HepG2UTP18
SCARB2ENSG00000138760.43157.583102358.501100.420909.233008.24450HepG2UTP3
SCARB2ENSG00000138760.41406.408602168.86440-0.624906.237505.16340HepG2XRN2
SCARB2ENSG00000138760.42210.809701909.305600.211402.847602.16810HepG2ZC3H8
SCARB2ENSG00000138760.43652.325102686.696600.4429013.7798012.79250HepG2ZNF622
SCARB2ENSG00000138760.41146.53420877.818400.385202.872201.62060K562ABCF1
SCARB2ENSG00000138760.41510.893001153.740600.389005.285104.54190K562AGGF1
SCARB2ENSG00000138760.41507.872301006.466400.583105.925605.12360K562AQR
SCARB2ENSG00000138760.41017.85820464.587601.1314016.5226014.36850K562BOP1
SCARB2ENSG00000138760.4853.75490611.449800.481503.331101.73710K562BUD13
SCARB2ENSG00000138760.41792.148301378.822700.378204.117302.63940K562CCDC124
SCARB2ENSG00000138760.4928.66420619.697700.583503.087901.95750K562CNOT7
SCARB2ENSG00000138760.4772.29040493.960400.644606.787305.55100K562CPSF6
SCARB2ENSG00000138760.41340.99420778.750300.784009.344807.32010K562DDX3X
SCARB2ENSG00000138760.41325.28270899.559300.558909.426708.30920K562DDX47
SCARB2ENSG00000138760.41607.507301291.907800.315203.428802.43910K562DKC1
SCARB2ENSG00000138760.4681.53680527.653200.369102.265501.43980K562EFTUD2
SCARB2ENSG00000138760.41361.33080677.267101.0071024.9892023.18640K562EIF2S2
SCARB2ENSG00000138760.4448.83720294.919400.605802.509401.55510K562EIF3A
SCARB2ENSG00000138760.4935.96340564.903400.728306.245604.60140K562EIF3D
SCARB2ENSG00000138760.41812.016901266.101800.517109.260007.58170K562EIF4G2
SCARB2ENSG00000138760.4673.67420469.759900.520003.226001.32910K562FAM120A
SCARB2ENSG00000138760.41051.19280502.650201.0643012.0612010.19510K562FMR1
SCARB2ENSG00000138760.4676.81270426.066200.667605.488204.14730K562FTO
SCARB2ENSG00000138760.41339.53160829.089900.692005.119604.09070K562G3BP2
SCARB2ENSG00000138760.41295.00740902.544200.520805.536904.46370K562GRSF1
SCARB2ENSG00000138760.4978.37130738.010900.406603.626502.39230K562HNRNPA1
SCARB2ENSG00000138760.41522.74850855.518200.8317012.0408010.41080K562HSPD1
SCARB2ENSG00000138760.4723.24630949.26050-0.392302.189101.30630K562IGF2BP2
SCARB2ENSG00000138760.4763.10530402.738400.921907.723806.07340K562KRR1
SCARB2ENSG00000138760.4748.52940995.53730-0.411403.756502.66860K562MATR3
SCARB2ENSG00000138760.41022.86030656.706600.6392010.778609.29430K562MTPAP
SCARB2ENSG00000138760.41218.24700812.419000.584407.833705.78820K562NCBP2
SCARB2ENSG00000138760.4963.24190729.606000.400704.819903.87310K562NSUN2
SCARB2ENSG00000138760.4990.59610595.349300.734504.325802.75880K562PABPC1
SCARB2ENSG00000138760.41059.56960566.251200.903904.570703.20970K562PABPN1
SCARB2ENSG00000138760.41752.232201300.941500.429505.214703.32820K562PNPT1
SCARB2ENSG00000138760.4946.68360513.468700.8825010.280208.82940K562PRPF8
SCARB2ENSG00000138760.42269.782501381.451400.7163011.595809.92110K562PUF60
SCARB2ENSG00000138760.42268.755601469.115700.626908.695706.72240K562PUM1
SCARB2ENSG00000138760.42112.511601439.722800.5531011.049409.11850K562PUM2
SCARB2ENSG00000138760.41666.883701190.660600.485304.728804.04350K562PUS1
SCARB2ENSG00000138760.4729.44630929.31890-0.349402.480201.68760K562RBM22
SCARB2ENSG00000138760.41136.28230522.986901.1194014.7028012.79470K562RPS19
SCARB2ENSG00000138760.4798.12720524.958300.604303.782402.20870K562RRP9
SCARB2ENSG00000138760.4925.27830517.727100.837603.145201.83840K562SF1
SCARB2ENSG00000138760.41087.56000720.015200.594903.046902.19320K562SF3A3
SCARB2ENSG00000138760.4740.24310448.582000.722505.903304.44970K562SF3B1
SCARB2ENSG00000138760.4705.41100950.15360-0.429703.742602.92560K562SRSF1
SCARB2ENSG00000138760.4643.09120864.65820-0.427103.411402.22690K562SRSF4
SCARB2ENSG00000138760.4984.73360758.898700.375703.938802.37080K562SSB
SCARB2ENSG00000138760.41112.36570827.926800.426003.327701.81720K562SSRP1
SCARB2ENSG00000138760.41394.21150729.323100.934703.415801.31080K562SUGP2
SCARB2ENSG00000138760.41660.66980711.306401.223107.447004.77680K562SUPT6H
SCARB2ENSG00000138760.4740.97520497.079500.575804.128102.86630K562SUPV3L1
SCARB2ENSG00000138760.4621.47080488.583200.347002.314201.56310K562SYNCRIP
SCARB2ENSG00000138760.4754.56550961.60180-0.349802.322401.67130K562TARDBP
SCARB2ENSG00000138760.4660.60020470.788900.488603.169702.16270K562TIAL1
SCARB2ENSG00000138760.4702.77760910.26650-0.373202.678501.60670K562TRA2A
SCARB2ENSG00000138760.4392.22020526.13200-0.423802.384701.44630K562UCHL5
SCARB2ENSG00000138760.41070.95710773.621000.469106.499405.45190K562UPF1
SCARB2ENSG00000138760.41048.44320783.360700.420403.908401.90490K562UPF2
SCARB2ENSG00000138760.41116.53810654.734800.769908.124006.15710K562UTP3
SCARB2ENSG00000138760.41027.98230661.956000.634907.905106.38150K562WDR3
SCARB2ENSG00000138760.4852.75300688.405400.308802.120901.37250K562WDR43
SCARB2ENSG00000138760.41299.91970604.918601.103506.235603.60780K562XPO5
SCARB2ENSG00000138760.4712.32160535.804100.410702.554401.40780K562XRN2
SCARB2ENSG00000138760.41210.48920699.810300.790503.424601.60480K562YTHDC2
SCARB2ENSG00000138760.41472.733701133.698800.377403.405702.43330K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCARB2 is not available on ENCORE database.





1 RBPs can affect the splicing of SCARB2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSCARB2ENSG00000138760.4chr4-7708436177084568770843617708453677087402770875080.078000.008830.04750longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCARB2 is not avaliable on ENCORE database.