AMDHD2

General Information

Gene Name : AMDHD2
Gene ID : ENSG00000162066.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AMDHD2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AMDHD2	ENSG00000162066.15	0.48	2.64	1.56	ENCSR000AEF
HepG2	AMDHD2	ENSG00000162066.15	43.59	6.41	25.00	ENCSR985KAT
K562	AMDHD2	ENSG00000162066.15	13.10	6.76	9.93	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AMDHD2 is not avaliable on ENCORE database.

Proteins bound to RNA

AMDHD2 RNA is bound by 43 proteins.

CanvasJS.com

eCLIP assay for AMDHD2 is not avaliable on ENCORE database.

43 proteins are bound to AMDHD2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	2579179	2579276	+	intron-Distal,intron-Proximal	4.42507	49.61575	HepG2	EFTUD2
chr16	2578746	2578827	+	intron-Distal,intron-Proximal	5.81802	49.41288	HepG2	EFTUD2
chr16	2577720	2577795	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.11193	29.58630	HepG2	EFTUD2
chr16	2580677	2580855	+	3'-UTR,CDS	3.48353	28.63740	HepG2	LSM11
chr16	2578943	2578997	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.26031	25.29240	HepG2	EFTUD2
chr16	2578357	2578382	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.95908	23.87695	HepG2	PPIG
chr16	2578716	2578760	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.76028	20.02267	HepG2	PRPF8
chr16	2578739	2578808	+	intron-Distal,intron-Proximal	3.27016	19.85171	HepG2	BUD13
chr16	2578311	2578357	+	3'-UTR,CDS,intron-Distal	4.05291	18.30164	HepG2	PPIG
chr16	2577647	2577708	+	intron-Distal,intron-Proximal	5.69669	18.00309	HepG2	EFTUD2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 148 entries

eCLIP assay for AMDHD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AMDHD2 is not available on ENCORE database.
107 RBPs can affect the levels of AMDHD2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AMDHD2 is not available on ENCORE database.

107 RBPs can affect the gene expression of AMDHD2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AMDHD2	ENSG00000162066.10	284.70000	957.59020	-1.75000	59.40210	57.49990	HepG2	ACO1
AMDHD2	ENSG00000162066.10	1125.43450	443.24920	1.34420	43.33380	41.26860	HepG2	SLBP
AMDHD2	ENSG00000162066.10	704.84840	213.86310	1.72050	40.79320	38.17490	HepG2	PPIL4
AMDHD2	ENSG00000162066.10	613.44880	213.52410	1.52240	33.33950	31.46040	HepG2	SAFB2
AMDHD2	ENSG00000162066.10	442.31360	1213.99160	-1.45660	26.34710	25.21230	HepG2	SRFBP1
AMDHD2	ENSG00000162066.10	521.35280	213.09560	1.29070	24.49490	22.73400	HepG2	DNAJC2
AMDHD2	ENSG00000162066.10	479.46450	919.73190	-0.93980	22.32050	21.13290	HepG2	ZNF622
AMDHD2	ENSG00000162066.10	895.30390	445.02910	1.00840	22.79870	21.05970	HepG2	HNRNPL
AMDHD2	ENSG00000162066.10	950.15180	340.98280	1.47840	20.00400	18.13760	HepG2	XRN2
AMDHD2	ENSG00000162066.10	152.25560	423.91270	-1.47730	17.92090	16.27770	HepG2	CALR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 121 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AMDHD2 is not available on ENCORE database.

16 RBPs can affect the splicing of AMDHD2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	AMDHD2	ENSG00000162066.10	chr16	+	2578452	2578719			2578452	2578560	2578650	2578719	0.41900	0.00000	0.00004	included	HepG2	PCBP1
RI	AMDHD2	ENSG00000162066.10	chr16	+	2578452	2578719			2578452	2578560	2578650	2578719	0.41600	0.00000	0.00000	included	HepG2	SF3B4
RI	AMDHD2	ENSG00000162066.10	chr16	+	2578452	2578719			2578452	2578560	2578650	2578719	0.37000	0.00000	0.00000	included	HepG2	RBM22
MXE	AMDHD2	ENSG00000162066.10	chr16	+	2577561	2577616	2577773	2577986	2570984	2571124	2578060	2578149	-0.52800	0.00000	0.00033	2included	HepG2	BCCIP
MXE	AMDHD2	ENSG00000162066.10	chr16	+	2577561	2577616	2577773	2577986	2570984	2571124	2578060	2578149	-0.52900	0.00000	0.00000	2included	HepG2	XRN2
MXE	AMDHD2	ENSG00000162066.10	chr16	+	2577561	2577616	2577773	2577986	2570984	2571124	2578060	2578149	-0.44400	0.00001	0.00202	2included	HepG2	BCLAF1
MXE	AMDHD2	ENSG00000162066.10	chr16	+	2577561	2577616	2577773	2577986	2570984	2571124	2578060	2578149	-0.38700	0.00003	0.00146	2included	HepG2	DDX55
MXE	AMDHD2	ENSG00000162066.10	chr16	+	2577561	2577616	2577773	2577986	2570984	2571124	2578060	2578149	-0.36100	0.00012	0.01936	2included	HepG2	UCHL5
MXE	AMDHD2	ENSG00000162066.10	chr16	+	2577561	2577616	2577773	2577986	2570984	2571124	2578060	2578149	-0.45400	0.00023	0.01168	2included	HepG2	TIAL1
RI	AMDHD2	ENSG00000162066.10	chr16	+	2578452	2578719			2578452	2578560	2578650	2578719	0.74700	0.00033	0.00355	included	HepG2	U2AF2

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AMDHD2

General Information

Functions

Localization

Domains (AlphaFold: AMDHD2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AMDHD2 is not avaliable on ENCORE database.

43 proteins are bound to AMDHD2 RNA:

eCLIP assay for AMDHD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AMDHD2 is not available on ENCORE database.

107 RBPs can affect the gene expression of AMDHD2 :

The Knockdown/knockout RNA-Seq assay for AMDHD2 is not available on ENCORE database.

16 RBPs can affect the splicing of AMDHD2 :

The Knockdown/knockout RNA-Seq assay for AMDHD2 is not avaliable on ENCORE database.