VLDLR

General Information

Gene Name       : VLDLR
Gene ID             : ENSG00000147852.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VLDLR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VLDLRENSG00000147852.150.280.410.34ENCSR000AEF
HepG2VLDLRENSG00000147852.150.400.540.47ENCSR985KAT
K562VLDLRENSG00000147852.150.170.270.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VLDLR is not avaliable on ENCORE database.



Proteins bound to RNA
  • VLDLR RNA is bound by 2 proteins.  







eCLIP assay for VLDLR is not avaliable on ENCORE database.





2 proteins are bound to VLDLR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr926218542621915+5'-UTR4.197833.40229HepG2CSTF2T
chr926220562622131+5'-UTR5.607406.17200HepG2PCBP2
chr926218492621929+5'-UTR4.375487.33240HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VLDLR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VLDLR is not available on ENCORE database.

  • 122 RBPs can affect the levels of VLDLR.  








The Knockdown/knockout RNA-Seq assay for VLDLR is not available on ENCORE database.





122 RBPs can affect the gene expression of VLDLR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VLDLRENSG00000147852.11302.78110180.579900.745504.484103.14940HepG2AATF
VLDLRENSG00000147852.1194.38920254.44360-1.430707.806506.33790HepG2ABCF1
VLDLRENSG00000147852.11496.50810271.114400.872803.702803.01890HepG2ACO1
VLDLRENSG00000147852.111044.74720234.951102.1526038.7131037.04260HepG2AKAP1
VLDLRENSG00000147852.11713.23910413.115700.787703.518702.35170HepG2AKAP8
VLDLRENSG00000147852.11520.80930272.366100.9351012.4809011.00800HepG2AKAP8L
VLDLRENSG00000147852.11282.00490194.402700.536602.361101.63170HepG2ASCC1
VLDLRENSG00000147852.11440.33860229.655800.939007.671605.45870HepG2ATP5C1
VLDLRENSG00000147852.11831.03740305.370001.4443036.2747034.29250HepG2AUH
VLDLRENSG00000147852.1160.46310143.84660-1.250404.241003.07980HepG2BCCIP
VLDLRENSG00000147852.11232.47680125.015000.894902.089501.30420HepG2BCLAF1
VLDLRENSG00000147852.1144.64340115.29190-1.368805.526104.71550HepG2BOP1
VLDLRENSG00000147852.11278.12360190.659800.544602.538901.36070HepG2BUD13
VLDLRENSG00000147852.11301.19480207.215200.539503.024902.22030HepG2CALR
VLDLRENSG00000147852.11601.72230318.056100.919707.182505.59860HepG2CCAR1
VLDLRENSG00000147852.1164.04660184.69580-1.528008.889107.56870HepG2CIRBP
VLDLRENSG00000147852.11147.32690271.02890-0.879407.213006.23250HepG2CKAP4
VLDLRENSG00000147852.11303.83630454.88940-0.582202.636701.89100HepG2CNOT7
VLDLRENSG00000147852.11202.74440105.840100.937704.692203.81810HepG2CPSF6
VLDLRENSG00000147852.11461.71960209.571401.1395012.2129010.09010HepG2CPSF7
VLDLRENSG00000147852.1138.1297088.88680-1.221103.575002.36740HepG2CSTF2
VLDLRENSG00000147852.11426.24640184.885701.205009.606806.81130HepG2CSTF2T
VLDLRENSG00000147852.11682.37080299.567901.187607.780206.80500HepG2CELF1
VLDLRENSG00000147852.11102.17470250.72970-1.2951013.4342011.89330HepG2DDX19B
VLDLRENSG00000147852.11298.41170211.000100.500002.691501.54900HepG2DDX1
VLDLRENSG00000147852.11319.14370199.251100.679504.089703.28020HepG2DDX21
VLDLRENSG00000147852.11123.45650194.96870-0.659202.860401.92910HepG2DDX24
VLDLRENSG00000147852.11792.24350225.066201.8155029.6717027.86800HepG2DDX3X
VLDLRENSG00000147852.11598.56510423.488700.499103.594002.12030HepG2DDX47
VLDLRENSG00000147852.11658.20860120.190602.4531027.8990025.23260HepG2DDX59
VLDLRENSG00000147852.112023.95050193.334603.38790102.0185099.18600HepG2DDX6
VLDLRENSG00000147852.1170.62120259.37610-1.8769019.4499018.02970HepG2DKC1
VLDLRENSG00000147852.11349.98940206.898700.758306.277505.25200HepG2DNAJC21
VLDLRENSG00000147852.1175.78380202.43250-1.417508.319206.81720HepG2EEF2
VLDLRENSG00000147852.1188.08060168.78370-0.938304.243502.86880HepG2EFTUD2
VLDLRENSG00000147852.11708.89910183.469401.9499028.3831025.22360HepG2AGO1
VLDLRENSG00000147852.11615.15030185.859201.7266024.4704022.82550HepG2EIF2S1
VLDLRENSG00000147852.11419.36230193.040601.1192011.349509.20570HepG2EIF2S2
VLDLRENSG00000147852.1197.47530164.34570-0.753602.657001.77010HepG2EIF3D
VLDLRENSG00000147852.1193.46190188.15130-1.009405.690804.22070HepG2EIF3G
VLDLRENSG00000147852.1147.59540205.39720-2.1095016.0505014.52410HepG2EIF4A3
VLDLRENSG00000147852.11350.56670199.981200.809704.095403.26620HepG2EIF4B
VLDLRENSG00000147852.11124.69310317.77710-1.3496014.2696012.66070HepG2EIF4G1
VLDLRENSG00000147852.11470.67340304.406200.628604.617503.58110HepG2EIF4G2
VLDLRENSG00000147852.1193.67940220.43260-1.234507.638805.94900HepG2ESF1
VLDLRENSG00000147852.111972.02590350.558302.49190100.0273097.42070HepG2ETF1
VLDLRENSG00000147852.11307.30740146.853401.065209.472007.28680HepG2FAM120A
VLDLRENSG00000147852.11332.49270189.872000.808205.787204.23120HepG2FASTKD2
VLDLRENSG00000147852.11212.29960106.030101.001502.939401.89100HepG2FTO
VLDLRENSG00000147852.11273.31710109.360501.3214010.418008.94200HepG2FUBP3
VLDLRENSG00000147852.11326.07010192.241700.762202.669702.01540HepG2G3BP1
VLDLRENSG00000147852.1196.92230204.08730-1.074305.680604.39320HepG2G3BP2
VLDLRENSG00000147852.11228.04980119.966800.926604.543003.73560HepG2GPKOW
VLDLRENSG00000147852.11481.78150255.464700.915204.269002.36750HepG2GTF2F1
VLDLRENSG00000147852.11445.46990258.820500.783308.919907.29170HepG2HDGF
VLDLRENSG00000147852.11307.75550208.880800.559002.736902.09360HepG2HNRNPA1
VLDLRENSG00000147852.1148.43910232.33960-2.2620019.0269017.37830HepG2HNRNPC
VLDLRENSG00000147852.11399.90940194.658701.038608.593807.41510HepG2HNRNPK
VLDLRENSG00000147852.11384.29670293.385700.389302.541801.89380HepG2HNRNPL
VLDLRENSG00000147852.11175.64270114.487500.617402.124201.56500HepG2HNRNPLL
VLDLRENSG00000147852.11317.86910195.410000.701803.830003.04720HepG2IGF2BP2
VLDLRENSG00000147852.11411.99260183.381701.167703.823602.66540HepG2IGF2BP3
VLDLRENSG00000147852.11303.00550235.758600.361902.162501.50540HepG2ILF2
VLDLRENSG00000147852.1192.87080196.54810-1.081604.928103.55450HepG2KHSRP
VLDLRENSG00000147852.11290.57850189.014800.620303.120801.37060HepG2CCAR2
VLDLRENSG00000147852.11418.24860247.816000.755008.210006.52780HepG2KIF1C
VLDLRENSG00000147852.11215.96530335.83090-0.636902.923602.06930HepG2LARP4
VLDLRENSG00000147852.11125.36680219.66910-0.809204.312402.79580HepG2LIN28B
VLDLRENSG00000147852.1153.30700207.30670-1.9594014.1699012.73630HepG2MAGOH
VLDLRENSG00000147852.11314.78540207.973300.597903.279202.40210HepG2MSI2
VLDLRENSG00000147852.11366.35860174.629201.0689010.273707.98880HepG2NAA15
VLDLRENSG00000147852.11943.57840426.406201.1458012.113909.30870HepG2NKRF
VLDLRENSG00000147852.11112.78050284.73310-1.336103.867201.69480HepG2NUFIP2
VLDLRENSG00000147852.1161.91670122.88210-0.988903.224601.49680HepG2PA2G4
VLDLRENSG00000147852.11347.75440190.029000.871705.909804.86750HepG2PABPC4
VLDLRENSG00000147852.11110.27140210.94740-0.935805.819204.99050HepG2PCBP1
VLDLRENSG00000147852.11451.91230257.812100.809606.867204.21650HepG2PES1
VLDLRENSG00000147852.1169.74120135.90700-0.962504.048702.55370HepG2PKM
VLDLRENSG00000147852.11514.51080323.412400.669706.134305.14870HepG2PUM2
VLDLRENSG00000147852.111178.40980316.018701.8987056.6190053.78130HepG2RBM15
VLDLRENSG00000147852.11194.27200293.01170-0.592902.550102.04750HepG2RBM22
VLDLRENSG00000147852.11150.57440252.34870-0.744903.803602.62890HepG2RBM27
VLDLRENSG00000147852.11123.56860204.91900-0.729702.494001.48810HepG2RCC2
VLDLRENSG00000147852.11140.78770238.88590-0.762803.607803.00650HepG2NELFE
VLDLRENSG00000147852.11107.52980222.51380-1.049206.765505.86340HepG2RECQL
VLDLRENSG00000147852.1186.62040140.83380-0.701202.728802.04880HepG2RPLP0
VLDLRENSG00000147852.11124.25610243.36160-0.969803.090902.09420HepG2RPS10
VLDLRENSG00000147852.11133.51980232.71960-0.801504.269003.28200HepG2RPS2
VLDLRENSG00000147852.11106.33770456.91310-2.1033025.2745022.97800HepG2RPS3A
VLDLRENSG00000147852.11115.58640237.57000-1.039404.614503.21240HepG2RPS5
VLDLRENSG00000147852.1140.69050107.98810-1.408104.427503.45850HepG2RRP9
VLDLRENSG00000147852.11102.40020205.54180-1.005206.704405.76670HepG2SAFB2
VLDLRENSG00000147852.11240.58790433.97230-0.851004.878802.87200HepG2SBDS
VLDLRENSG00000147852.11206.17770113.313500.863504.219603.36490HepG2SF3B1
VLDLRENSG00000147852.11300.75250223.463100.428402.275001.73190HepG2SF3B4
VLDLRENSG00000147852.11952.28140330.963401.5246021.3230020.27310HepG2SRFBP1
VLDLRENSG00000147852.11218.83600301.03650-0.460102.398701.81110HepG2SRSF5
VLDLRENSG00000147852.11506.39720189.778501.4159025.6487024.28760HepG2SRSF9
VLDLRENSG00000147852.11137.60280287.38500-1.062504.971704.32320HepG2SSB
VLDLRENSG00000147852.11249.74230397.51040-0.670603.925202.59190HepG2STIP1
VLDLRENSG00000147852.11623.97700231.648901.4295013.1520010.74570HepG2SUB1
VLDLRENSG00000147852.11219.40870342.35290-0.641904.730203.95560HepG2SUCLG1
VLDLRENSG00000147852.11308.57310173.517900.830406.006904.65020HepG2SUPT6H
VLDLRENSG00000147852.11219.91160140.799500.643202.641901.97890HepG2SUPV3L1
VLDLRENSG00000147852.11738.02170209.694601.8153034.7464033.04580HepG2TAF15
VLDLRENSG00000147852.11300.40430111.619801.4282012.3525010.98560HepG2TARDBP
VLDLRENSG00000147852.11148.99680440.18490-1.562807.550705.88920HepG2TBRG4
VLDLRENSG00000147852.11370.19080192.646300.942209.043007.54650HepG2TIA1
VLDLRENSG00000147852.11677.51500226.273301.5821037.7128035.93130HepG2TRIM56
VLDLRENSG00000147852.1165.97150130.60190-0.985303.776201.95460HepG2TROVE2
VLDLRENSG00000147852.11153.16490297.87030-0.959606.796905.33210HepG2TUFM
VLDLRENSG00000147852.11499.70600315.299900.664303.726502.74910HepG2UBE2L3
VLDLRENSG00000147852.11251.70600172.344500.546303.023102.29990HepG2UPF1
VLDLRENSG00000147852.11110.01490166.39040-0.596902.319301.75980HepG2UTP3
VLDLRENSG00000147852.1152.97500138.60110-1.387605.264404.27250HepG2XRN2
VLDLRENSG00000147852.11262.15120158.997000.721304.902804.05160HepG2ZC3H8
VLDLRENSG00000147852.11566.17640189.544701.5786034.5334033.15850HepG2ZNF622
VLDLRENSG00000147852.1123.7888057.64830-1.277002.867702.29060K562AGGF1
VLDLRENSG00000147852.1119.3936059.98130-1.628903.338402.61990K562AKAP8L
VLDLRENSG00000147852.1194.187505.580404.0770019.4207017.77080K562EIF2S2
VLDLRENSG00000147852.110.0000012.17540-99999.999993.936402.99470K562EIF3G
VLDLRENSG00000147852.1128.762408.081101.831502.687501.99300K562G3BP2
VLDLRENSG00000147852.1164.414507.395603.122504.853503.80780K562HSPD1
VLDLRENSG00000147852.1111.7623041.65370-1.824302.746901.76110K562PABPN1
VLDLRENSG00000147852.111.9703016.09150-3.029803.096002.39790K562PTBP1
VLDLRENSG00000147852.119.2002059.51630-2.693506.317005.53500K562PUS1
VLDLRENSG00000147852.119.9880057.96370-2.536905.385204.58330K562RBM15
VLDLRENSG00000147852.112.4245016.22720-2.742702.739501.65320K562NELFE
VLDLRENSG00000147852.1150.1532012.557901.997604.410202.73900K562SSB
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VLDLR is not available on ENCORE database.





4 RBPs can affect the splicing of VLDLR :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVLDLRENSG00000147852.11chr9+265141426514982650369265051626518732651954-0.675000.000070.00988excludedHepG2QKI
SEVLDLRENSG00000147852.11chr9+265141426514982650369265051626518732651954-0.571000.000000.00020excludedHepG2DDX3X
SEVLDLRENSG00000147852.11chr9+265141426514982650369265051626518732651954-0.730000.000000.00001excludedHepG2NCBP2
SEVLDLRENSG00000147852.11chr9+265141426514982650369265051626518732651954-0.580000.001610.07370excludedHepG2PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VLDLR is not avaliable on ENCORE database.