USP48

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	USP48	ENSG00000090686.15	73.41	55.16	64.28	ENCSR000AEF
HepG2	USP48	ENSG00000090686.15	16.07	28.65	22.36	ENCSR985KAT
K562	USP48	ENSG00000090686.15	72.72	81.17	76.94	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for USP48 is not avaliable on ENCORE database.

Proteins bound to RNA

USP48 RNA is bound by 48 proteins.

eCLIP assay for USP48 is not avaliable on ENCORE database.

48 proteins are bound to USP48 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	22055047	22055091	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19092	13.17713	K562	ZNF622
chr1	22083047	22083078	-	3'-UTR,CDS,intron-Distal	3.85782	7.89918	K562	DDX24
chr1	22083089	22083111	-	3'-UTR,CDS,intron-Distal	3.01321	6.89911	K562	YBX3
chr1	22056254	22056326	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.17532	21.54662	K562	DDX24
chr1	22055184	22055210	-	3'-UTR,CDS,intron-Distal	4.15634	10.24470	HepG2	BCLAF1
chr1	22005737	22005788	-	3'-UTR,intron-Distal,intron-Proximal	3.79720	15.07625	K562	YBX3
chr1	22005527	22005603	-	3'-UTR,intron-Distal,intron-Proximal	3.52388	8.69661	K562	TIA1
chr1	22083073	22083169	-	3'-UTR,CDS,intron-Distal	3.05665	5.61593	K562	PUM1
chr1	22083078	22083141	-	3'-UTR,CDS,intron-Distal	3.40102	6.26015	K562	RBM15
chr1	22083111	22083154	-	3'-UTR,CDS,intron-Distal	3.16308	14.32958	K562	YBX3
chr1	22055107	22055184	-	3'-UTR,CDS,intron-Distal	4.20896	18.56106	HepG2	BCLAF1
chr1	22083039	22083136	-	3'-UTR,CDS,intron-Distal	3.37915	13.35189	HepG2	BCLAF1
chr1	22083147	22083199	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.11491	15.75803	K562	BUD13
chr1	22054908	22054991	-	3'-UTR,intron-Distal,intron-Proximal	3.68595	4.72143	K562	TIA1
chr1	22083164	22083186	-	3'-UTR,CDS,intron-Distal	4.30181	7.97334	HepG2	BCLAF1
chr1	22005825	22005896	-	3'-UTR,intron-Distal,intron-Proximal	3.50770	4.40956	HepG2	SUB1
chr1	22083046	22083101	-	3'-UTR,CDS,intron-Distal	4.47511	3.92527	K562	FXR1
chr1	22055037	22055093	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.08355	8.20182	HepG2	BCLAF1
chr1	22055027	22055096	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49594	18.74287	K562	UCHL5
chr1	22054882	22054970	-	3'-UTR,intron-Distal,intron-Proximal	3.20984	3.22526	HepG2	QKI
chr1	22055097	22055177	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.22015	6.30405	HepG2	GRWD1
chr1	22056225	22056325	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.50984	29.50696	HepG2	BCLAF1
chr1	22005427	22005470	-	3'-UTR,intron-Distal	4.30812	4.54401	K562	KHSRP
chr1	22005464	22005521	-	3'-UTR,intron-Distal	3.04544	3.07411	K562	LIN28B
chr1	22056196	22056252	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.06627	13.20590	K562	UCHL5
chr1	22056284	22056325	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.17368	4.09741	HepG2	PPIG
chr1	22005511	22005661	-	3'-UTR,intron-Distal,intron-Proximal	3.87940	16.85602	K562	ZC3H11A
chr1	22005610	22005667	-	3'-UTR,intron-Distal,intron-Proximal	5.32874	9.83024	K562	TIA1
chr1	22056196	22056225	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.27267	10.24470	HepG2	BCLAF1
chr1	22054383	22054510	-	3'-UTR,intron-Distal	6.12616	7.19045	K562	SLBP
chr1	22055065	22055166	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.15829	8.80388	K562	ZNF800
chr1	22056252	22056318	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.12947	30.54348	K562	UCHL5
chr1	22005505	22005563	-	3'-UTR,intron-Distal	3.64536	7.66579	K562	PABPC4
chr1	22084228	22084289	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.87939	5.00298	K562	U2AF2
chr1	22084241	22084277	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32205	3.36034	K562	SRSF1
chr1	22109473	22109527	-	5'-UTR,intron-Distal,intron-Proximal	3.46215	4.70139	K562	HNRNPM
chr1	22109540	22109619	-	5'-UTR,intron-Distal,intron-Proximal	4.08687	3.30425	K562	LIN28B
chr1	22108463	22108518	-	5'-UTR,intron-Distal,intron-Proximal	4.08645	6.31832	K562	HNRNPM
chr1	22109303	22109413	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.43362	13.72367	K562	SRSF1
chr1	22109427	22109478	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.43129	7.98234	K562	DDX3X
chr1	22109522	22109582	-	5'-UTR,intron-Distal,intron-Proximal	3.52669	5.89284	K562	RBM15
chr1	22109477	22109507	-	5'-UTR,intron-Distal,intron-Proximal	4.16225	22.04844	K562	RBM15
chr1	22109517	22109521	-	5'-UTR,intron-Distal,intron-Proximal	5.16385	22.83798	K562	RBM15
chr1	22109507	22109517	-	5'-UTR,intron-Distal,intron-Proximal	5.32421	28.07419	K562	RBM15
chr1	22109527	22109585	-	5'-UTR,intron-Distal,intron-Proximal	3.39399	4.70139	K562	HNRNPM
chr1	22109478	22109587	-	5'-UTR,intron-Distal,intron-Proximal	4.11793	15.32799	K562	DDX3X
chr1	22108468	22108522	-	5'-UTR,intron-Distal,intron-Proximal	4.27489	3.60235	HepG2	HNRNPM
chr1	22109273	22109340	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.91694	8.16221	HepG2	PRPF8
chr1	22109587	22109647	-	5'-UTR,intron-Distal	4.18505	5.23852	K562	DDX3X
chr1	22109545	22109595	-	5'-UTR,intron-Distal,intron-Proximal	4.48074	5.85562	K562	GEMIN5
chr1	22041880	22041924	-	CDS,intron-Distal,intron-Proximal	3.78549	45.44671	K562	DDX24
chr1	22073615	22073642	-	CDS,intron-Distal	3.69276	6.39464	HepG2	BCLAF1
chr1	22079484	22079524	-	CDS,intron-Distal,intron-Proximal	3.54889	4.24159	K562	RBM15
chr1	22021499	22021563	-	CDS,intron-Distal,intron-Proximal	3.05476	6.62672	K562	AQR
chr1	22033294	22033358	-	CDS,intron-Distal	4.76496	36.44100	K562	ZNF622
chr1	22078018	22078051	-	CDS,intron-Distal	3.58812	9.12722	K562	ZNF622
chr1	22041876	22041902	-	CDS,intron-Distal,intron-Proximal	3.57736	3.34848	HepG2	PPIG
chr1	22032958	22033042	-	CDS,intron-Distal,intron-Proximal	3.82049	14.44458	HepG2	BCLAF1
chr1	22041878	22041904	-	CDS,intron-Distal,intron-Proximal	3.30657	3.34034	HepG2	HLTF
chr1	22032226	22032277	-	CDS,intron-Distal	3.95409	17.12088	K562	DDX24
chr1	22073559	22073595	-	CDS,intron-Distal,intron-Proximal	3.15430	10.22067	K562	BUD13
chr1	22033356	22033361	-	CDS,intron-Distal	3.71156	34.78893	K562	UCHL5
chr1	22050541	22050605	-	CDS,intron-Distal,intron-Proximal	3.44214	6.82255	HepG2	U2AF2
chr1	22047580	22047653	-	CDS,intron-Distal,intron-Proximal	3.39300	27.46449	K562	UCHL5
chr1	22032617	22032652	-	CDS,intron-Distal,intron-Proximal	3.92850	15.73919	K562	DDX24
chr1	22032321	22032393	-	CDS,intron-Distal,intron-Proximal	3.05462	11.45416	K562	SF3B4
chr1	22033282	22033326	-	CDS,intron-Distal	3.59836	20.53726	K562	UCHL5
chr1	22041911	22041951	-	CDS,intron-Distal,intron-Proximal	3.65948	5.85504	K562	SF3B4
chr1	22074636	22074667	-	CDS,intron-Distal	3.96616	3.49332	HepG2	PPIG
chr1	22013690	22013741	-	CDS,intron-Distal,intron-Proximal	3.94439	5.55543	K562	GPKOW
chr1	22062937	22063005	-	CDS,intron-Distal,intron-Proximal	3.27278	30.75995	K562	ZNF622
chr1	22021576	22021619	-	CDS,intron-Distal	3.52411	11.23706	K562	UCHL5
chr1	22073559	22073606	-	CDS,intron-Distal,intron-Proximal	4.80800	20.88881	HepG2	BCLAF1
chr1	22041881	22041903	-	CDS,intron-Distal,intron-Proximal	3.90264	8.35533	K562	ZNF800
chr1	22078080	22078107	-	CDS,intron-Distal	3.25957	8.46648	K562	DDX24
chr1	22013692	22013752	-	CDS,intron-Distal,intron-Proximal	3.45269	10.89935	K562	BUD13
chr1	22074690	22074759	-	CDS,intron-Distal,intron-Proximal	3.47099	4.71371	HepG2	GRWD1
chr1	22079552	22079610	-	CDS,intron-Distal	3.04141	3.72943	K562	GRWD1
chr1	22041880	22041913	-	CDS,intron-Distal,intron-Proximal	3.35601	4.06415	K562	TRA2A
chr1	22048143	22048177	-	CDS,intron-Distal	3.76601	11.18809	K562	UCHL5
chr1	22047588	22047658	-	CDS,intron-Distal,intron-Proximal	3.09541	23.97770	K562	ZNF622
chr1	22030762	22030815	-	CDS,intron-Distal	5.13011	14.51064	HepG2	BCLAF1
chr1	22041916	22041950	-	CDS,intron-Distal	3.02353	3.10677	K562	SRSF1
chr1	22077930	22078050	-	CDS,intron-Distal,intron-Proximal	5.14412	24.43229	K562	PRPF8
chr1	22063096	22063133	-	CDS,intron-Distal,intron-Proximal	3.08520	8.35895	K562	GPKOW
chr1	22028004	22028090	-	CDS,intron-Distal	3.65123	25.42316	K562	UCHL5
chr1	22048188	22048257	-	CDS,intron-Distal	3.02686	6.04751	HepG2	GRWD1
chr1	22033003	22033077	-	CDS,intron-Distal	3.03578	11.26001	K562	UCHL5
chr1	22073559	22073602	-	CDS,intron-Distal,intron-Proximal	3.65772	4.71371	HepG2	GRWD1
chr1	22033326	22033356	-	CDS,intron-Distal	3.68713	40.89805	K562	UCHL5
chr1	22079549	22079596	-	CDS,intron-Distal	3.20135	9.18328	K562	BUD13
chr1	22029959	22030006	-	CDS,intron-Distal,intron-Proximal	4.60000	20.52365	K562	AQR
chr1	22021510	22021567	-	CDS,intron-Distal,intron-Proximal	3.19589	6.75365	K562	PRPF8
chr1	22041910	22041948	-	CDS,intron-Distal	4.83737	17.57985	K562	ZNF622
chr1	22047555	22047659	-	CDS,intron-Distal,intron-Proximal	3.54117	13.41553	HepG2	BCLAF1
chr1	22032655	22032692	-	CDS,intron-Distal,intron-Proximal	3.07796	3.71466	K562	GPKOW
chr1	22033264	22033281	-	CDS,intron-Distal	3.34962	6.97987	K562	ZNF622
chr1	22063098	22063118	-	CDS,intron-Distal	4.53970	12.34598	K562	DDX24
chr1	22041875	22041949	-	CDS,intron-Distal,intron-Proximal	4.27473	7.71112	K562	CPSF6
chr1	22078001	22078009	-	CDS,intron-Distal	4.38347	8.41475	HepG2	BCLAF1
chr1	22077925	22078014	-	CDS,intron-Distal,intron-Proximal	3.75180	10.38502	K562	AQR
chr1	22033291	22033326	-	CDS,intron-Distal	3.13270	4.38893	K562	ZNF800
chr1	22032249	22032320	-	CDS,intron-Distal	4.16525	5.75613	K562	ZNF800
chr1	22027992	22028071	-	CDS,intron-Distal	3.53376	5.28199	HepG2	GRWD1
chr1	22074694	22074761	-	CDS,intron-Distal,intron-Proximal	3.27234	14.68035	K562	ZNF622
chr1	22048189	22048243	-	CDS,intron-Distal	3.41908	22.19552	K562	ZNF622
chr1	22074678	22074764	-	CDS,intron-Distal,intron-Proximal	4.89723	24.22788	HepG2	BCLAF1
chr1	22079019	22079024	-	CDS,intron-Distal,intron-Proximal	3.43215	12.51870	K562	ZNF622
chr1	22047537	22047588	-	CDS,intron-Distal	3.26452	11.39548	K562	ZNF622
chr1	22032670	22032680	-	CDS,intron-Distal	4.16325	14.57455	K562	DDX24
chr1	22079598	22079628	-	CDS,intron-Distal,intron-Proximal	3.87753	8.13013	K562	AQR
chr1	22032649	22032679	-	CDS,intron-Distal	3.03789	5.69345	HepG2	BCLAF1
chr1	22062938	22062966	-	CDS,intron-Distal,intron-Proximal	3.43051	4.88910	K562	ZNF800
chr1	22032250	22032269	-	CDS,intron-Distal	3.06527	5.26596	K562	YBX3
chr1	22063085	22063118	-	CDS,intron-Distal	4.05650	14.75464	HepG2	BCLAF1
chr1	22062938	22062988	-	CDS,intron-Distal,intron-Proximal	6.25026	15.82171	HepG2	BCLAF1
chr1	22073560	22073613	-	CDS,intron-Distal	4.33103	4.66217	K562	GRWD1
chr1	22079018	22079113	-	CDS,intron-Distal,intron-Proximal	5.29981	32.21573	HepG2	BCLAF1
chr1	22079019	22079086	-	CDS,intron-Distal,intron-Proximal	3.25306	13.92310	K562	DDX24
chr1	22078072	22078109	-	CDS,intron-Distal,intron-Proximal	5.03664	20.55953	HepG2	BCLAF1
chr1	22013698	22013776	-	CDS,intron-Distal,intron-Proximal	4.69946	8.69408	K562	SF3B4
chr1	22062938	22062985	-	CDS,intron-Distal,intron-Proximal	3.32519	14.60014	K562	DDX24
chr1	22063074	22063137	-	CDS,intron-Distal,intron-Proximal	4.32796	9.37034	K562	U2AF1
chr1	22048247	22048258	-	CDS,intron-Distal,intron-Proximal	3.60313	17.77898	K562	ZNF622
chr1	22041880	22041916	-	CDS,intron-Distal,intron-Proximal	3.59421	4.13112	K562	SRSF1
chr1	22048177	22048240	-	CDS,intron-Distal	3.39343	24.46094	K562	UCHL5
chr1	22033263	22033329	-	CDS,intron-Distal	3.21500	24.55421	K562	DDX24
chr1	22013703	22013754	-	CDS,intron-Distal,intron-Proximal	3.21081	4.38107	K562	AQR
chr1	22041880	22041911	-	CDS,intron-Distal,intron-Proximal	4.10203	46.64262	K562	UCHL5
chr1	22079018	22079053	-	CDS,intron-Distal,intron-Proximal	3.26659	3.63043	HepG2	GRWD1
chr1	22048177	22048238	-	CDS,intron-Distal	4.99618	20.55953	HepG2	BCLAF1
chr1	22033332	22033362	-	CDS,intron-Distal,intron-Proximal	4.43151	16.12884	HepG2	BCLAF1
chr1	22050615	22050649	-	CDS,intron-Distal,intron-Proximal	4.38533	4.69223	K562	SF3B4
chr1	22079566	22079669	-	CDS,intron-Distal,intron-Proximal	3.91415	22.38879	K562	SF3B4
chr1	22063084	22063119	-	CDS,intron-Distal,intron-Proximal	3.50395	4.06531	HepG2	GRWD1
chr1	22073599	22073617	-	CDS,intron-Distal	3.36881	6.93851	K562	BUD13
chr1	22032225	22032254	-	CDS,intron-Distal	4.37682	12.05816	K562	ZNF622
chr1	22047485	22047535	-	CDS,intron-Distal,intron-Proximal	3.12714	4.48980	K562	PRPF8
chr1	22032254	22032286	-	CDS,intron-Distal	3.14337	10.97972	K562	ZNF622
chr1	22063079	22063119	-	CDS,intron-Distal,intron-Proximal	3.53144	21.08230	K562	ZNF622
chr1	22041881	22041905	-	CDS,intron-Distal,intron-Proximal	5.39836	30.53015	K562	ZNF622
chr1	22079041	22079121	-	CDS,intron-Distal	4.34633	10.97769	K562	GRWD1
chr1	22016494	22016552	-	CDS,intron-Distal	3.93393	4.88658	HepG2	SUB1
chr1	22074758	22074786	-	CDS,intron-Distal,intron-Proximal	4.98501	22.15827	K562	SF3B4
chr1	22074599	22074777	-	CDS,intron-Distal,intron-Proximal	3.49258	6.68812	HepG2	BUD13
chr1	22021564	22021665	-	CDS,intron-Distal	4.46326	16.40391	HepG2	BCLAF1
chr1	22033329	22033362	-	CDS,intron-Distal,intron-Proximal	3.57671	42.76976	K562	DDX24
chr1	22063084	22063127	-	CDS,intron-Distal,intron-Proximal	3.50358	11.09224	K562	BUD13
chr1	22073558	22073604	-	CDS,intron-Distal,intron-Proximal	4.27933	19.82194	K562	DDX24
chr1	22032285	22032330	-	CDS,intron-Distal	4.51683	15.93877	K562	DDX24
chr1	22041924	22041943	-	CDS,intron-Distal	3.32519	8.46648	K562	DDX24
chr1	22048243	22048259	-	CDS,intron-Distal,intron-Proximal	3.48238	9.03865	HepG2	BCLAF1
chr1	22032258	22032286	-	CDS,intron-Distal	3.09462	6.09950	HepG2	BCLAF1
chr1	22073559	22073566	-	CDS,intron-Distal,intron-Proximal	3.24692	16.74851	K562	ZNF622
chr1	22073558	22073595	-	CDS,intron-Distal,intron-Proximal	3.36123	4.30200	K562	LIN28B
chr1	22028021	22028094	-	CDS,intron-Distal	3.06068	18.44918	K562	ZNF622
chr1	22033282	22033328	-	CDS,intron-Distal	4.08834	4.55183	K562	HLTF
chr1	22047530	22047580	-	CDS,intron-Distal	4.35957	18.97502	K562	UCHL5
chr1	22063076	22063136	-	CDS,intron-Distal,intron-Proximal	3.30768	4.97118	HepG2	U2AF2
chr1	22073566	22073580	-	CDS,intron-Distal	3.23507	17.59140	K562	ZNF622
chr1	22033290	22033332	-	CDS,intron-Distal	3.87522	10.92176	HepG2	BCLAF1
chr1	22074694	22074768	-	CDS,intron-Distal,intron-Proximal	3.30068	12.48742	K562	DDX24
chr1	22079053	22079108	-	CDS,intron-Distal	4.57749	5.64460	HepG2	GRWD1
chr1	22074706	22074758	-	CDS,intron-Distal,intron-Proximal	4.04543	15.34537	K562	SF3B4
chr1	22041881	22041914	-	CDS,intron-Distal,intron-Proximal	5.12407	20.22136	HepG2	BCLAF1
chr1	22021561	22021600	-	CDS,intron-Distal	3.68948	13.11799	K562	DDX24
chr1	22079548	22079611	-	CDS,intron-Distal	3.56546	11.74374	HepG2	BCLAF1
chr1	22048143	22048176	-	CDS,intron-Distal	5.71507	9.44272	HepG2	BCLAF1
chr1	22074630	22074678	-	CDS,intron-Distal,intron-Proximal	4.28473	14.24397	HepG2	BCLAF1
chr1	22078019	22078060	-	CDS,intron-Distal	4.78382	10.64218	HepG2	BCLAF1
chr1	22050547	22050610	-	CDS,intron-Distal,intron-Proximal	3.48052	6.73042	K562	U2AF1
chr1	22032959	22033001	-	CDS,intron-Distal,intron-Proximal	3.57577	18.94981	K562	DDX24
chr1	22033358	22033361	-	CDS,intron-Distal	4.42499	20.55694	K562	ZNF622
chr1	22033326	22033362	-	CDS,intron-Distal,intron-Proximal	3.63226	8.00663	K562	ZNF800
chr1	22028047	22028091	-	CDS,intron-Distal	3.59784	8.19964	HepG2	BCLAF1
chr1	22041934	22041950	-	CDS,intron-Distal	3.67978	11.18809	K562	UCHL5
chr1	22050389	22050445	-	CDS,intron-Distal,intron-Proximal	3.13543	9.43113	HepG2	BCLAF1
chr1	22063071	22063136	-	CDS,intron-Distal,intron-Proximal	3.03232	10.30329	K562	U2AF2
chr1	22032222	22032327	-	CDS,intron-Distal	3.73487	3.55204	K562	FXR1
chr1	22032224	22032258	-	CDS,intron-Distal	4.33913	10.57092	HepG2	BCLAF1
chr1	22010146	22010220	-	intron-Distal	3.36695	4.70071	K562	SAFB2
chr1	22082896	22082970	-	intron-Distal,intron-Proximal	3.03849	14.84500	K562	PRPF8
chr1	22067389	22067472	-	intron-Distal	4.34332	3.42734	K562	PTBP1
chr1	22081975	22082047	-	intron-Distal	3.31689	5.21138	HepG2	HNRNPC
chr1	22084632	22084706	-	intron-Distal	4.97113	7.52645	K562	TARDBP
chr1	22079672	22079723	-	intron-Distal,intron-Proximal	3.66026	5.96041	K562	KHSRP
chr1	22041786	22041830	-	intron-Distal,intron-Proximal	3.05495	3.67092	K562	PRPF8
chr1	22081473	22081516	-	intron-Distal	4.64742	6.79920	K562	KHDRBS1
chr1	22079628	22079642	-	intron-Distal,intron-Proximal	3.95370	6.32052	K562	AQR
chr1	22074532	22074592	-	intron-Distal,intron-Proximal	4.07899	13.54812	K562	AQR
chr1	22064123	22064197	-	intron-Distal	5.02555	8.06346	K562	KHSRP
chr1	22077680	22077789	-	intron-Distal	4.56973	35.11815	K562	KHSRP
chr1	22011061	22011165	-	intron-Distal	4.65073	7.54438	K562	SAFB2
chr1	22096834	22096940	-	intron-Distal	4.84381	6.55010	K562	HNRNPL
chr1	22062789	22062866	-	intron-Distal,intron-Proximal	4.69276	5.33214	K562	PRPF8
chr1	22081534	22081594	-	intron-Distal	3.99336	8.73281	K562	KHDRBS1
chr1	22041803	22041848	-	intron-Distal,intron-Proximal	3.45088	4.63311	K562	AQR
chr1	22029906	22029939	-	intron-Distal,intron-Proximal	3.87488	3.43550	K562	AQR
chr1	22027920	22027974	-	intron-Distal,intron-Proximal	3.75922	6.79537	K562	AQR
chr1	22007229	22007282	-	intron-Distal,intron-Proximal	3.71057	6.62503	K562	KHSRP
chr1	22077909	22077976	-	intron-Distal,intron-Proximal	4.72774	6.97875	K562	RBM22
chr1	22029890	22029932	-	intron-Distal,intron-Proximal	4.21383	5.19823	K562	KHSRP
chr1	22033087	22033141	-	intron-Distal,intron-Proximal	4.10058	4.36481	K562	EFTUD2
chr1	22006667	22006726	-	intron-Distal	4.16363	3.73926	K562	RBM15
chr1	22102450	22102588	-	intron-Distal	4.21697	4.08332	K562	NONO
chr1	22077856	22077982	-	intron-Distal,intron-Proximal	3.42652	3.53952	HepG2	KHSRP
chr1	22075345	22075412	-	intron-Distal	4.20078	5.19287	HepG2	HNRNPC
chr1	22029959	22030001	-	intron-Distal,intron-Proximal	4.43098	4.53454	K562	PRPF8
chr1	22104681	22104763	-	intron-Distal	3.41646	4.08064	K562	KHSRP
chr1	22074551	22074598	-	intron-Distal,intron-Proximal	3.20314	4.48980	K562	PRPF8
chr1	22030927	22031032	-	intron-Distal,intron-Proximal	5.37295	22.41375	K562	KHSRP
chr1	22005986	22006011	-	intron-Distal	3.55178	4.52210	K562	KHSRP
chr1	22048409	22048478	-	intron-Distal	4.11425	15.57980	K562	KHSRP
chr1	22013210	22013303	-	intron-Distal	3.84424	7.43456	K562	SAFB2
chr1	22048332	22048462	-	intron-Distal,intron-Proximal	4.87074	7.22833	HepG2	KHSRP
chr1	22077724	22077765	-	intron-Distal	3.47736	3.54718	K562	PRPF8
chr1	22031423	22031525	-	intron-Distal	4.06663	14.74773	K562	PTBP1
chr1	22073473	22073554	-	intron-Distal,intron-Proximal	3.13539	6.21868	K562	KHSRP
chr1	22029765	22029864	-	intron-Distal	3.45816	10.41291	K562	KHSRP
chr1	22031132	22031174	-	intron-Distal,intron-Proximal	3.24665	3.90146	K562	KHSRP
chr1	22082286	22082345	-	intron-Distal	3.87098	9.96365	K562	XRCC6
chr1	22032340	22032355	-	intron-Distal,intron-Proximal	3.82564	5.24705	K562	BUD13
chr1	22109270	22109294	-	intron-Distal,intron-Proximal	4.52156	8.54286	K562	PRPF8
chr1	22077845	22077901	-	intron-Distal,intron-Proximal	3.60026	11.97388	K562	KHSRP
chr1	22062002	22062049	-	intron-Distal	4.34888	3.41592	K562	XRCC6
chr1	22032573	22032618	-	intron-Distal,intron-Proximal	4.00008	7.90583	K562	AQR
chr1	22064197	22064242	-	intron-Distal	3.49540	4.93120	K562	KHSRP
chr1	22081516	22081534	-	intron-Distal	4.99924	9.65189	K562	KHDRBS1
chr1	22013220	22013308	-	intron-Distal	4.15626	4.17902	K562	SAFB
chr1	22021446	22021532	-	intron-Distal,intron-Proximal	5.40456	9.13185	K562	RBM22
chr1	22077561	22077656	-	intron-Distal	3.84781	12.94500	K562	KHSRP
chr1	22040646	22040734	-	intron-Distal	3.02683	3.20331	K562	CSTF2T
chr1	22074592	22074631	-	intron-Distal,intron-Proximal	3.18137	9.13138	K562	AQR
chr1	22077833	22077930	-	intron-Distal,intron-Proximal	3.46234	13.94877	K562	PRPF8
chr1	22083218	22083283	-	intron-Distal,intron-Proximal	3.87609	6.18396	K562	KHSRP
chr1	22032933	22032960	-	intron-Distal,intron-Proximal	3.24249	9.68935	K562	AQR
chr1	22081174	22081321	-	intron-Distal	3.15951	3.14771	K562	TAF15
chr1	22109109	22109168	-	intron-Distal	3.33029	4.28282	K562	EFTUD2
chr1	22077565	22077638	-	intron-Distal	4.29162	3.35169	HepG2	U2AF2
chr1	22096781	22096941	-	intron-Distal	4.52996	10.47376	HepG2	QKI
chr1	22077928	22077992	-	intron-Distal,intron-Proximal	3.28780	7.50498	K562	KHSRP
chr1	22056390	22056469	-	intron-Distal,intron-Proximal	4.46622	10.06297	K562	KHSRP
chr1	22008256	22008334	-	intron-Distal	4.52618	6.03314	K562	SAFB2
chr1	22081003	22081079	-	intron-Distal	3.63262	3.05298	K562	GRWD1
chr1	22078925	22078977	-	intron-Distal,intron-Proximal	3.42816	4.06013	K562	PRPF8
chr1	22032918	22032933	-	intron-Distal,intron-Proximal	6.01358	11.56697	K562	AQR
chr1	22027799	22027863	-	intron-Distal	3.09970	4.10299	K562	HNRNPC
chr1	22063985	22064028	-	intron-Distal	3.72030	3.02234	K562	KHSRP
chr1	22048478	22048545	-	intron-Distal	4.80119	14.21720	K562	KHSRP
chr1	22106346	22106394	-	intron-Distal	4.65540	6.48592	K562	TIA1
chr1	22031068	22031177	-	intron-Distal,intron-Proximal	4.46639	6.10779	K562	QKI
chr1	22082126	22082178	-	intron-Distal	3.63703	3.39716	K562	U2AF2
chr1	22008643	22008762	-	intron-Distal	3.91062	3.13793	K562	SAFB
chr1	22085207	22085249	-	intron-Distal	4.85474	7.47869	K562	HNRNPL
chr1	22048308	22048397	-	intron-Distal,intron-Proximal	6.04435	39.61474	K562	KHSRP
chr1	22096815	22096958	-	intron-Distal	3.35037	8.33541	K562	QKI
chr1	22067532	22067609	-	intron-Distal	5.13883	18.13669	K562	LSM11
chr1	22067627	22067691	-	intron-Distal	4.29448	8.20636	HepG2	LSM11
chr1	22041951	22042007	-	intron-Distal,intron-Proximal	4.41664	15.24119	K562	SF3B4
chr1	22037871	22037907	-	intron-Distal	3.18238	3.18845	HepG2	HNRNPM
chr1	22077795	22077845	-	intron-Distal	3.65675	8.89894	K562	KHSRP
chr1	22010967	22011036	-	intron-Distal	4.00743	3.43228	K562	SAFB2
chr1	22083203	22083250	-	intron-Distal,intron-Proximal	6.17197	13.04469	K562	SF3B4
chr1	22021411	22021458	-	intron-Distal	3.78811	5.25185	K562	PRPF8
chr1	22062774	22062870	-	intron-Distal,intron-Proximal	3.63318	8.56571	K562	KHSRP
chr1	22037916	22037962	-	intron-Distal	3.34926	3.34940	K562	HNRNPM
chr1	22023061	22023160	-	intron-Distal	3.82263	8.56427	K562	QKI
chr1	22032459	22032587	-	intron-Distal,intron-Proximal	4.71680	14.66647	K562	KHSRP
chr1	22074786	22074814	-	intron-Distal,intron-Proximal	6.13384	14.59522	K562	SF3B4
chr1	22084040	22084098	-	intron-Distal,intron-Proximal	3.00301	4.48038	K562	PRPF8
chr1	22021475	22021510	-	intron-Distal,intron-Proximal	3.33466	4.48980	K562	PRPF8
chr1	22038198	22038228	-	intron-Distal	3.48336	5.05066	K562	HNRNPM
chr1	22008009	22008064	-	intron-Distal	4.49742	4.14527	K562	SLTM
chr1	22082913	22082973	-	intron-Distal,intron-Proximal	4.07117	4.95164	K562	HNRNPC
chr1	22048545	22048575	-	intron-Distal	3.23306	4.08064	K562	KHSRP
chr1	22067619	22067691	-	intron-Distal	6.95321	54.71699	K562	LSM11
chr1	22016423	22016466	-	intron-Distal,intron-Proximal	3.30045	5.75231	K562	AQR
chr1	22031032	22031119	-	intron-Distal,intron-Proximal	4.49930	15.54239	K562	KHSRP
chr1	22013037	22013094	-	intron-Distal	3.81460	3.54264	K562	SAFB2
chr1	22031430	22031523	-	intron-Distal	3.66136	3.89405	HepG2	PTBP1
chr1	22032517	22032567	-	intron-Distal,intron-Proximal	3.57574	6.00776	K562	PRPF8
chr1	22007623	22007669	-	intron-Distal	3.65364	3.01412	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for USP48 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for USP48 is not available on ENCORE database.
93 RBPs can affect the levels of USP48.

The Knockdown/knockout RNA-Seq assay for USP48 is not available on ENCORE database.

93 RBPs can affect the gene expression of USP48 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
USP48	ENSG00000090686.11	1107.18130	1898.27450	-0.77780	9.88590	8.27570	HepG2	ABCF1
USP48	ENSG00000090686.11	1293.05900	1694.49140	-0.39010	6.53550	5.68170	HepG2	ACO1
USP48	ENSG00000090686.11	1314.21590	1702.54420	-0.37350	5.42630	4.38580	HepG2	AKAP8L
USP48	ENSG00000090686.11	2542.21680	2152.60540	0.23990	3.14590	2.42020	HepG2	AUH
USP48	ENSG00000090686.11	1135.29460	1694.23330	-0.57760	14.05440	12.79660	HepG2	CKAP4
USP48	ENSG00000090686.11	1363.77330	1868.24150	-0.45410	2.33990	1.63970	HepG2	CNOT7
USP48	ENSG00000090686.11	1387.86680	1880.59300	-0.43830	4.06940	3.25050	HepG2	CPSF6
USP48	ENSG00000090686.11	1675.31990	2078.22150	-0.31090	3.85060	3.11440	HepG2	CELF1
USP48	ENSG00000090686.11	1199.47380	1567.21240	-0.38580	6.50830	5.31070	HepG2	DDX19B
USP48	ENSG00000090686.11	990.52990	1621.19760	-0.71080	16.09610	14.75410	HepG2	DKC1
USP48	ENSG00000090686.11	1003.60940	1307.35280	-0.38150	2.45210	1.78550	HepG2	DNAJC21
USP48	ENSG00000090686.11	1106.20140	1394.04910	-0.33370	2.15170	1.33830	HepG2	EEF2
USP48	ENSG00000090686.11	2107.20840	1352.39090	0.63970	7.07000	6.15380	HepG2	EIF2S1
USP48	ENSG00000090686.11	1138.36580	1655.91870	-0.54070	6.90230	5.58800	HepG2	EWSR1
USP48	ENSG00000090686.11	1307.11170	870.20470	0.58690	7.07770	5.85590	HepG2	FUBP3
USP48	ENSG00000090686.11	711.71420	1007.68390	-0.50170	4.16910	3.05760	HepG2	GEMIN5
USP48	ENSG00000090686.11	1687.67730	2131.80050	-0.33700	2.23900	1.65940	HepG2	GPKOW
USP48	ENSG00000090686.11	769.81930	1319.87510	-0.77780	6.87830	5.92810	HepG2	HNRNPA1
USP48	ENSG00000090686.11	1452.80380	1758.98410	-0.27590	3.00130	2.25710	HepG2	HNRNPF
USP48	ENSG00000090686.11	1521.86330	2034.41630	-0.41880	3.61760	2.90790	HepG2	HNRNPLL
USP48	ENSG00000090686.11	833.45890	1458.34280	-0.80710	8.44670	7.42880	HepG2	HNRNPU
USP48	ENSG00000090686.11	1273.14500	1732.10920	-0.44410	5.06650	4.11500	HepG2	IGF2BP1
USP48	ENSG00000090686.11	1138.78760	1421.87720	-0.32030	2.12260	1.52170	HepG2	IGF2BP2
USP48	ENSG00000090686.11	1283.21140	1549.04620	-0.27160	3.66790	2.49520	HepG2	KIF1C
USP48	ENSG00000090686.11	1213.68570	1508.52150	-0.31370	2.00670	1.44420	HepG2	MAGOH
USP48	ENSG00000090686.11	999.57000	1551.36980	-0.63420	8.62920	7.27390	HepG2	MSI2
USP48	ENSG00000090686.11	1717.62370	2215.73430	-0.36740	4.02000	3.10120	HepG2	NOL12
USP48	ENSG00000090686.11	1138.28200	1364.92580	-0.26200	2.46650	1.88590	HepG2	PCBP1
USP48	ENSG00000090686.11	1127.61520	1350.96620	-0.26070	2.49350	1.75490	HepG2	PRPF4
USP48	ENSG00000090686.11	919.29350	2115.13850	-1.20220	29.73790	28.05960	HepG2	PUF60
USP48	ENSG00000090686.11	1592.33750	2245.34350	-0.49580	12.78890	11.71180	HepG2	PUM1
USP48	ENSG00000090686.11	1682.72000	2243.68440	-0.41510	5.29770	4.38390	HepG2	PUM2
USP48	ENSG00000090686.11	1341.19930	1725.96550	-0.36390	5.84720	5.01130	HepG2	PUS1
USP48	ENSG00000090686.11	1782.61030	1365.12050	0.38490	4.12670	3.31690	HepG2	RBM25
USP48	ENSG00000090686.11	1137.52920	1607.49300	-0.49890	2.95180	1.92530	HepG2	RBM27
USP48	ENSG00000090686.11	1320.25040	1545.69660	-0.22740	1.99360	1.51810	HepG2	NELFE
USP48	ENSG00000090686.11	1402.43770	1876.15770	-0.41980	2.52190	1.75720	HepG2	RPS3A
USP48	ENSG00000090686.11	1177.51710	1951.35810	-0.72870	6.48400	5.42720	HepG2	SF3A3
USP48	ENSG00000090686.11	1652.01690	2013.67120	-0.28560	2.19590	1.56240	HepG2	SF3B1
USP48	ENSG00000090686.11	1204.57970	1514.64970	-0.33050	2.17800	1.59650	HepG2	SMN1
USP48	ENSG00000090686.11	2056.79940	1509.29120	0.44640	8.68550	7.95350	HepG2	SRSF1
USP48	ENSG00000090686.11	1689.97320	2088.42790	-0.30540	4.09940	3.36560	HepG2	SRSF5
USP48	ENSG00000090686.11	1288.34100	2025.75540	-0.65290	13.75460	12.78620	HepG2	SSB
USP48	ENSG00000090686.11	1717.94460	2375.08640	-0.46730	10.78050	9.68840	HepG2	SUCLG1
USP48	ENSG00000090686.11	1959.07510	1356.79280	0.52990	9.41440	8.47930	HepG2	TAF15
USP48	ENSG00000090686.11	1609.71510	1982.92140	-0.30080	2.27380	1.60730	HepG2	TARDBP
USP48	ENSG00000090686.11	1268.38650	2018.02430	-0.66990	2.52010	1.49740	HepG2	TBRG4
USP48	ENSG00000090686.11	1586.67060	1246.51350	0.34800	3.64530	2.69150	HepG2	TIA1
USP48	ENSG00000090686.11	1651.91090	2066.45070	-0.32300	3.04030	2.12010	HepG2	TUFM
USP48	ENSG00000090686.11	1099.25740	1639.72240	-0.57690	6.29750	5.36640	HepG2	U2AF1
USP48	ENSG00000090686.11	1422.87810	3169.20680	-1.15530	4.23550	3.00230	HepG2	U2AF2
USP48	ENSG00000090686.11	1759.32680	2187.33850	-0.31420	2.06620	1.34910	HepG2	UBE2L3
USP48	ENSG00000090686.11	1463.57930	1730.55540	-0.24170	2.84670	2.13920	HepG2	UPF1
USP48	ENSG00000090686.11	1476.90930	1778.77590	-0.26830	3.01850	1.92890	HepG2	UTP18
USP48	ENSG00000090686.11	1075.73770	1670.78470	-0.63520	13.80930	12.62470	HepG2	UTP3
USP48	ENSG00000090686.11	867.28090	1217.67640	-0.48960	3.37720	2.58090	HepG2	XRN2
USP48	ENSG00000090686.11	1549.07500	1333.21540	0.21640	2.42710	1.79160	HepG2	ZC3H8
USP48	ENSG00000090686.11	1254.97820	1903.28100	-0.60080	16.95790	15.89030	HepG2	ZNF622
USP48	ENSG00000090686.11	5550.84240	8961.25170	-0.69100	11.87510	10.78360	K562	AQR
USP48	ENSG00000090686.11	1822.07810	2342.03460	-0.36220	3.08920	1.96300	K562	CCAR1
USP48	ENSG00000090686.11	6728.11960	9414.62070	-0.48470	12.71370	10.38810	K562	CPEB4
USP48	ENSG00000090686.11	3788.54810	4503.33150	-0.24930	3.49830	1.99490	K562	DDX27
USP48	ENSG00000090686.11	8475.13220	9741.19210	-0.20090	2.93410	2.26430	K562	DDX47
USP48	ENSG00000090686.11	2918.50730	4427.26840	-0.60120	7.89680	6.28470	K562	EFTUD2
USP48	ENSG00000090686.11	4685.35750	6144.30060	-0.39110	7.66410	6.55510	K562	EIF2S2
USP48	ENSG00000090686.11	3208.98720	4740.76880	-0.56300	5.36580	3.86370	K562	EIF3D
USP48	ENSG00000090686.11	2963.95520	5372.25860	-0.85800	18.40760	16.11890	K562	EIF4A3
USP48	ENSG00000090686.11	5649.38000	6786.68610	-0.26460	2.33800	1.55880	K562	FIP1L1
USP48	ENSG00000090686.11	5118.08090	4259.22370	0.26490	2.93590	1.54890	K562	FUS
USP48	ENSG00000090686.11	4151.13210	5586.93080	-0.42860	9.07110	8.04900	K562	FXR1
USP48	ENSG00000090686.11	8733.98750	6091.47740	0.51970	4.26380	3.34300	K562	G3BP2
USP48	ENSG00000090686.11	5260.61500	8188.12510	-0.63830	12.88370	11.23050	K562	GRSF1
USP48	ENSG00000090686.11	2306.08770	4547.77950	-0.97970	23.61820	21.95200	K562	HNRNPC
USP48	ENSG00000090686.11	7228.72760	8803.55890	-0.28430	3.01560	1.90750	K562	HNRNPL
USP48	ENSG00000090686.11	4283.67040	6485.04780	-0.59830	9.50590	7.86780	K562	HNRNPU
USP48	ENSG00000090686.11	7282.06610	9201.64160	-0.33750	3.52350	2.62870	K562	HSPD1
USP48	ENSG00000090686.11	3355.00170	2446.83810	0.45530	4.32740	2.45050	K562	ILF3
USP48	ENSG00000090686.11	4427.81130	6961.60210	-0.65280	10.93250	9.18820	K562	MAGOH
USP48	ENSG00000090686.11	5787.27890	6934.12470	-0.26080	5.15300	4.07260	K562	MTPAP
USP48	ENSG00000090686.11	4509.29810	6194.54710	-0.45810	6.01260	4.55440	K562	PCBP2
USP48	ENSG00000090686.11	6440.77440	7703.88560	-0.25840	2.17130	1.44860	K562	PPIG
USP48	ENSG00000090686.11	2676.99950	4308.22900	-0.68650	10.34580	8.88950	K562	PRPF8
USP48	ENSG00000090686.11	4949.62040	6763.45030	-0.45040	6.00070	5.05470	K562	PTBP1
USP48	ENSG00000090686.11	6812.62270	12755.34710	-0.90480	21.92880	19.53720	K562	PUF60
USP48	ENSG00000090686.11	11064.01330	13293.25110	-0.26480	4.41340	3.19640	K562	PUM2
USP48	ENSG00000090686.11	10124.95860	8174.20490	0.30870	2.81260	2.26590	K562	PUS1
USP48	ENSG00000090686.11	5532.32520	6817.86910	-0.30140	3.96070	1.79500	K562	QKI
USP48	ENSG00000090686.11	4723.29470	6486.67290	-0.45770	5.52270	4.28760	K562	RBM22
USP48	ENSG00000090686.11	5021.48130	6322.24920	-0.33230	2.84790	1.44850	K562	RBM34
USP48	ENSG00000090686.11	3272.60330	4388.78280	-0.42340	3.29660	2.40280	K562	RPS19
USP48	ENSG00000090686.11	4381.64070	5986.36650	-0.45020	2.34550	1.43240	K562	RPS3
USP48	ENSG00000090686.11	3284.17480	4008.53170	-0.28750	2.80570	1.71500	K562	SAFB
USP48	ENSG00000090686.11	6360.63790	7602.31770	-0.25730	3.06840	2.21040	K562	SF3A3
USP48	ENSG00000090686.11	4377.85150	6335.61810	-0.53330	10.28930	8.59260	K562	SF3B4
USP48	ENSG00000090686.11	2712.45770	3526.10470	-0.37850	3.97760	2.67580	K562	SRFBP1
USP48	ENSG00000090686.11	4787.90840	6630.16260	-0.46960	6.49480	5.42170	K562	SRSF1
USP48	ENSG00000090686.11	4298.60440	5780.20390	-0.42730	2.47410	1.48560	K562	SRSF4
USP48	ENSG00000090686.11	3186.45670	4171.95230	-0.38880	3.03590	1.96870	K562	SUPV3L1
USP48	ENSG00000090686.11	3880.84420	4512.53450	-0.21760	2.07600	1.36430	K562	SYNCRIP
USP48	ENSG00000090686.11	4807.53960	6710.74670	-0.48120	5.14530	4.16570	K562	TARDBP
USP48	ENSG00000090686.11	5040.21490	6473.11810	-0.36100	4.36650	3.30130	K562	TIA1
USP48	ENSG00000090686.11	3345.12100	4165.85530	-0.31660	3.06810	2.06150	K562	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for USP48 is not available on ENCORE database.

29 RBPs can affect the splicing of USP48 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	USP48	ENSG00000090686.11	chr1	-	22050390	22050588			22048142	22048257	22055062	22055212	-0.17100	0.00000	0.00000	excluded	K562	SRSF1
SE	USP48	ENSG00000090686.11	chr1	-	22052990	22053129			22050464	22050588	22055062	22055212	0.07100	0.00000	0.00001	included	K562	SF3B4
SE	USP48	ENSG00000090686.11	chr1	-	22032959	22033082			22032618	22032680	22041881	22041950	-0.09000	0.00000	0.00006	excluded	K562	SF3B4
SE	USP48	ENSG00000090686.11	chr1	-	22050390	22050588			22048142	22048257	22055062	22055212	-0.05900	0.00049	0.01177	excluded	K562	SF3B4
SE	USP48	ENSG00000090686.11	chr1	-	22021614	22021714			22016466	22016592	22027990	22028095	-0.06500	0.00058	0.02460	excluded	K562	PRPF8
SE	USP48	ENSG00000090686.11	chr1	-	22033236	22033361			22032618	22032680	22041881	22041950	-0.17600	0.00025	0.00642	excluded	HepG2	U2AF1
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.06800	0.00000	0.00030	included	K562	XRCC6
SE	USP48	ENSG00000090686.11	chr1	-	22021614	22021744			22016466	22016592	22027990	22028095	0.47100	0.00000	0.00004	included	K562	AQR
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.06100	0.00015	0.01723	included	K562	SUPV3L1
SE	USP48	ENSG00000090686.11	chr1	-	22062938	22063118			22056196	22056325	22073559	22073642	-0.07100	0.00001	0.00130	excluded	K562	SUPV3L1
SE	USP48	ENSG00000090686.11	chr1	-	22021558	22021744			22016466	22016592	22027990	22028095	-0.07400	0.00461	0.05852	excluded	K562	PUS1
SE	USP48	ENSG00000090686.11	chr1	-	22050390	22050588			22048142	22048257	22055062	22055212	-0.09000	0.00194	0.08261	excluded	K562	EFTUD2
SE	USP48	ENSG00000090686.11	chr1	-	22032959	22033082			22032618	22032680	22041881	22041950	-0.06000	0.00026	0.00756	excluded	K562	U2AF1
SE	USP48	ENSG00000090686.11	chr1	-	22033236	22033361			22032959	22033082	22041881	22041950	-0.05200	0.00023	0.00940	excluded	HepG2	SF3A3
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.05200	0.00000	0.00000	included	K562	HNRNPUL1
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.05900	0.00001	0.00368	included	K562	SRSF7
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.13100	0.00029	0.03758	included	HepG2	TAF15
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.05500	0.00004	0.00120	included	K562	U2AF2
SE	USP48	ENSG00000090686.11	chr1	-	22021558	22021744			22016466	22016592	22027990	22028095	-0.15100	0.00000	0.00021	excluded	K562	U2AF2
SE	USP48	ENSG00000090686.11	chr1	-	22033236	22033400			22032959	22033082	22041881	22041950	-0.05200	0.00000	0.00008	excluded	K562	U2AF2
SE	USP48	ENSG00000090686.11	chr1	-	22021614	22021714			22016466	22016592	22027990	22028095	-0.05500	0.00147	0.05044	excluded	K562	TARDBP
SE	USP48	ENSG00000090686.11	chr1	-	22021558	22021744			22016466	22016592	22027990	22028095	-0.09300	0.00245	0.05500	excluded	K562	AGGF1
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.05200	0.00016	0.00953	included	K562	SF3B1
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.09000	0.00211	0.07517	included	HepG2	HNRNPU
SE	USP48	ENSG00000090686.11	chr1	-	22083321	22083456			22083038	22083195	22084155	22084276	0.16200	0.00001	0.00415	included	HepG2	FUS
SE	USP48	ENSG00000090686.11	chr1	-	22052990	22053129			22050390	22050588	22055062	22055212	0.07200	0.00000	0.00007	included	K562	HNRNPC
A3SS	USP48	ENSG00000090686.11	chr1	-	22030754	22030978			22030754	22030885	22032219	22032369	0.05300	0.00000	0.00000	longer	K562	AQR
A3SS	USP48	ENSG00000090686.11	chr1	-	22056196	22056441			22056196	22056325	22062922	22063118	0.20700	0.00114	0.00785	longer	K562	AQR
A3SS	USP48	ENSG00000090686.11	chr1	-	22050464	22050679			22050464	22050588	22055062	22055212	0.12000	0.00001	0.00013	longer	K562	AQR
A5SS	USP48	ENSG00000090686.11	chr1	-	22062922	22063118			22062938	22063118	22056196	22056325	0.05700	0.00011	0.00280	longer	K562	AQR
MXE	USP48	ENSG00000090686.11	chr1	-	22062938	22063118	22073559	22073642	22056196	22056325	22074630	22074764	-0.07100	0.00126	0.08538	2included	K562	HNRNPL
MXE	USP48	ENSG00000090686.11	chr1	-	22033236	22033361	22041881	22041950	22032959	22033082	22047528	22047659	0.10500	0.00140	0.02848	1included	HepG2	FTO
MXE	USP48	ENSG00000090686.11	chr1	-	22062938	22063118	22073559	22073642	22056196	22056325	22074630	22074764	0.14400	0.00002	0.00190	1included	K562	UCHL5
MXE	USP48	ENSG00000090686.11	chr1	-	22062938	22063118	22073559	22073642	22056196	22056322	22074630	22074764	0.07700	0.00044	0.01756	1included	K562	UCHL5
MXE	USP48	ENSG00000090686.11	chr1	-	22013683	22013732	22016466	22016592	22007300	22007327	22027990	22028095	0.07900	0.00134	0.02570	1included	K562	PUS1
MXE	USP48	ENSG00000090686.11	chr1	-	22073559	22073642	22077999	22078108	22062938	22063118	22079019	22079144	0.09200	0.00272	0.09299	1included	K562	SF3B1
MXE	USP48	ENSG00000090686.11	chr1	-	22073559	22073642	22074630	22074764	22062938	22063118	22077999	22078108	0.12900	0.00267	0.07457	1included	K562	LIN28B
MXE	USP48	ENSG00000090686.11	chr1	-	22074630	22074764	22077999	22078108	22073559	22073642	22079019	22079144	-0.10300	0.00026	0.01446	2included	K562	LIN28B
MXE	USP48	ENSG00000090686.11	chr1	-	22062938	22063118	22073559	22073658	22056196	22056322	22074630	22074764	0.15900	0.00002	0.00025	1included	K562	AQR
MXE	USP48	ENSG00000090686.11	chr1	-	22062938	22063174	22073559	22073658	22056196	22056322	22074630	22074764	0.16700	0.00001	0.00017	1included	K562	AQR
MXE	USP48	ENSG00000090686.11	chr1	-	22062922	22063118	22073559	22073642	22056196	22056325	22074630	22074684	-0.07100	0.00001	0.00012	2included	K562	AQR
MXE	USP48	ENSG00000090686.11	chr1	-	22021558	22021714	22027990	22028095	22016466	22016592	22030004	22030111	-0.07900	0.01550	0.08989	2included	K562	AQR
MXE	USP48	ENSG00000090686.11	chr1	-	22016466	22016592	22021558	22021714	22013683	22013732	22027990	22028095	-0.07100	0.00420	0.07796	2included	K562	TARDBP
MXE	USP48	ENSG00000090686.11	chr1	-	22073559	22073642	22074630	22074764	22062938	22063118	22077999	22078108	0.15600	0.00001	0.00145	1included	K562	LARP7
MXE	USP48	ENSG00000090686.11	chr1	-	22032959	22033082	22033236	22033361	22032618	22032680	22041881	22041950	-0.09700	0.00064	0.00555	2included	HepG2	U2AF2
MXE	USP48	ENSG00000090686.11	chr1	-	22032959	22033082	22033236	22033361	22032618	22032680	22041881	22041950	-0.07100	0.00716	0.07961	2included	HepG2	HNRNPUL1
MXE	USP48	ENSG00000090686.11	chr1	-	22073559	22073642	22074630	22074764	22062938	22063118	22077999	22078108	0.12600	0.00016	0.04492	1included	K562	METAP2
MXE	USP48	ENSG00000090686.11	chr1	-	22056196	22056322	22062938	22063118	22055062	22055212	22073559	22073642	0.12400	0.00082	0.07184	1included	K562	ZNF800
MXE	USP48	ENSG00000090686.11	chr1	-	22048142	22048257	22050390	22050588	22047528	22047659	22055062	22055212	-0.13500	0.00071	0.04840	2included	K562	RBM22
MXE	USP48	ENSG00000090686.11	chr1	-	22073559	22073642	22074630	22074764	22062938	22063118	22077999	22078108	0.10200	0.00062	0.05095	1included	K562	CPSF6
MXE	USP48	ENSG00000090686.11	chr1	-	22021558	22021714	22027990	22028095	22016466	22016592	22030004	22030111	-0.09800	0.00491	0.07366	2included	K562	PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

USP48

General Information

Functions

Localization

Domains (AlphaFold: USP48)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for USP48 is not avaliable on ENCORE database.

48 proteins are bound to USP48 RNA:

eCLIP assay for USP48 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for USP48 is not available on ENCORE database.

93 RBPs can affect the gene expression of USP48 :

The Knockdown/knockout RNA-Seq assay for USP48 is not available on ENCORE database.

29 RBPs can affect the splicing of USP48 :

The Knockdown/knockout RNA-Seq assay for USP48 is not avaliable on ENCORE database.