UBB

General Information

Gene Name : UBB
Gene ID : ENSG00000170315.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBB	ENSG00000170315.13	1023.54	1111.06	1067.30	ENCSR000AEF
HepG2	UBB	ENSG00000170315.13	1738.66	1132.47	1435.57	ENCSR985KAT
K562	UBB	ENSG00000170315.13	1214.12	1292.88	1253.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBB is not avaliable on ENCORE database.

Proteins bound to RNA

UBB RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for UBB is not avaliable on ENCORE database.

25 proteins are bound to UBB RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	16284461	16284470	+	5'-UTR,intron-Distal	8.35341	400.00000	HepG2	SUB1
chr17	16284468	16284482	+	5'-UTR,intron-Distal	4.08601	400.00000	K562	DDX3X
chr17	16284495	16284499	+	5'-UTR,intron-Distal,intron-Proximal	3.70905	400.00000	K562	DDX3X
chr17	16284462	16284470	+	5'-UTR,intron-Distal	5.54549	400.00000	K562	NOLC1
chr17	16284470	16284477	+	5'-UTR,intron-Distal	8.01453	400.00000	HepG2	SUB1
chr17	16284425	16284461	+	5'-UTR,intron-Distal,intron-Proximal	7.48501	400.00000	HepG2	SUB1
chr17	16284488	16284493	+	5'-UTR,intron-Distal	9.06157	400.00000	HepG2	SUB1
chr17	16284477	16284484	+	5'-UTR,intron-Distal	8.41339	400.00000	HepG2	SUB1
chr17	16284413	16284468	+	5'-UTR,intron-Distal,intron-Proximal	4.03654	400.00000	K562	DDX3X
chr17	16284458	16284462	+	5'-UTR,intron-Distal	5.69589	400.00000	K562	NOLC1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 70 entries

eCLIP assay for UBB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBB is not available on ENCORE database.
114 RBPs can affect the levels of UBB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for UBB is not available on ENCORE database.

114 RBPs can affect the gene expression of UBB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBB	ENSG00000170315.9	7136.84410	17608.12800	-1.30290	94.01000	91.76410	HepG2	SRSF9
UBB	ENSG00000170315.9	9356.61180	22165.34290	-1.24420	57.84590	56.13050	HepG2	NELFE
UBB	ENSG00000170315.9	11294.80660	20736.34310	-0.87650	53.65630	51.70570	HepG2	SF3B4
UBB	ENSG00000170315.9	15218.80600	9310.08200	0.70890	38.80790	37.02480	HepG2	PUS1
UBB	ENSG00000170315.9	12089.31320	21570.92060	-0.83540	32.17020	30.40900	HepG2	QKI
UBB	ENSG00000170315.9	13029.73600	20643.23680	-0.66390	32.00150	30.33060	HepG2	RECQL
UBB	ENSG00000170315.9	13808.05240	21643.87990	-0.64840	30.78050	29.57810	HepG2	SRSF1
UBB	ENSG00000170315.9	12590.24650	19916.29100	-0.66160	28.41840	27.02360	HepG2	PTBP1
UBB	ENSG00000170315.9	9993.66230	17876.05660	-0.83890	25.13440	22.66180	HepG2	TIA1
UBB	ENSG00000170315.9	20338.57760	13655.05420	0.57470	24.08240	22.52270	K562	AGGF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 132 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBB is not available on ENCORE database.

7 RBPs can affect the splicing of UBB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	UBB	ENSG00000170315.9	chr17	+	16285215	16285296	16284603	16284776	16285407	16285444	-0.30900	0.00000	0.00000	excluded	K562	SMNDC1
A5SS	UBB	ENSG00000170315.9	chr17	+	16284765	16284993	16284765	16284776	16285215	16285269	0.10500	0.00000	0.00000	longer	K562	AQR
A5SS	UBB	ENSG00000170315.9	chr17	+	16284603	16284820	16284603	16284776	16285215	16286054	0.08400	0.00001	0.00116	longer	HepG2	HNRNPK
SE	UBB	ENSG00000170315.9	chr17	+	16285215	16285296	16284603	16284776	16285407	16285500	-0.13300	0.00010	0.06625	excluded	K562	HLTF
A5SS	UBB	ENSG00000170315.9	chr17	+	16284603	16284820	16284603	16284776	16285215	16286054	0.08300	0.00038	0.03847	longer	HepG2	RBM22
A3SS	UBB	ENSG00000170315.9	chr17	+	16285360	16285444	16285407	16285444	16284408	16284429	0.82700	0.00045	0.08318	longer	K562	SUPV3L1
SE	UBB	ENSG00000170315.9	chr17	+	16285215	16285296	16284603	16284776	16285407	16285500	0.13400	0.00100	0.03760	included	K562	HNRNPU

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBB

General Information

Functions

Localization

Domains (AlphaFold: UBB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBB is not avaliable on ENCORE database.

25 proteins are bound to UBB RNA:

eCLIP assay for UBB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBB is not available on ENCORE database.

114 RBPs can affect the gene expression of UBB :

The Knockdown/knockout RNA-Seq assay for UBB is not available on ENCORE database.

7 RBPs can affect the splicing of UBB :

The Knockdown/knockout RNA-Seq assay for UBB is not avaliable on ENCORE database.