TRNP1

General Information

Gene Name       : TRNP1
Gene ID             : ENSG00000253368.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRNP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRNP1ENSG00000253368.30.000.010.01ENCSR000AEF
HepG2TRNP1ENSG00000253368.321.1132.5626.84ENCSR985KAT
K562TRNP1ENSG00000253368.30.980.660.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRNP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRNP1 RNA is bound by 17 proteins.  







eCLIP assay for TRNP1 is not avaliable on ENCORE database.





17 proteins are bound to TRNP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12732665227326702+3'-UTR3.829267.09239HepG2HNRNPK
chr12732689727326960+3'-UTR3.292677.89184HepG2FAM120A
chr12732681527326944+3'-UTR3.9893312.82321HepG2UPF1
chr12732665427326701+3'-UTR3.7518714.75813HepG2FAM120A
chr12732020827320325+5'-UTR,CDS3.6981311.58486HepG2NCBP2
chr12732026627320308+5'-UTR,CDS3.531684.74378HepG2GTF2F1
chr12732021227320250+5'-UTR3.9475210.68796HepG2DDX3X
chr12732026527320315+5'-UTR,CDS4.026677.63744HepG2FKBP4
chr12732109627321155+5'-UTR,intron-Proximal3.744494.57180HepG2AQR
chr12732025027320340+5'-UTR,CDS3.9117629.63837HepG2DDX3X
chr12732026027320312+5'-UTR,CDS3.436143.12788HepG2DGCR8
chr12732067627320735+CDS4.3044621.73679HepG2DDX3X
chr12732082527320896+CDS3.209136.88679HepG2XRN2
chr12732084027320873+CDS3.8612210.86334HepG2DDX3X
chr12732051827320587+CDS3.9787418.44147HepG2DDX3X
chr12732084127320901+CDS3.095504.66920HepG2RBM15
chr12732054627320640+CDS3.106326.08586HepG2FKBP4
chr12732060327320653+CDS4.0144217.62454HepG2DDX3X
chr12732054527320613+CDS3.064697.00497HepG2DHX30
chr12732067727320715+CDS3.526077.80713HepG2RBM15
chr12732042227320457+CDS4.081509.88902HepG2DDX3X
chr12732066927320715+CDS3.991848.20482HepG2NKRF
chr12732052627320597+CDS3.469557.88542HepG2XRN2
chr12732122327321255+intron-Distal3.991215.24699HepG2RBM15
chr12732622427326264+intron-Distal,intron-Proximal4.344743.50006HepG2SF3B4
chr12732615227326207+intron-Distal3.900993.17235HepG2HNRNPK
chr12732131527321336+intron-Distal3.217133.48399HepG2CSTF2T
chr12732311627323172+intron-Distal3.899286.61691HepG2RBFOX2
chr12732121127321267+intron-Distal,intron-Proximal3.959296.05097HepG2DGCR8
chr12732189927321984+intron-Distal3.190784.48153HepG2HNRNPK
chr12732626427326316+intron-Proximal3.663464.05505HepG2SF3B4
chr12732113627321192+intron-Proximal3.342914.56702HepG2SRSF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRNP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRNP1 is not available on ENCORE database.

  • 129 RBPs can affect the levels of TRNP1.  








The Knockdown/knockout RNA-Seq assay for TRNP1 is not available on ENCORE database.





129 RBPs can affect the gene expression of TRNP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRNP1ENSG00000253368.31251.150302124.46130-0.763809.828108.22150HepG2ABCF1
TRNP1ENSG00000253368.3527.849401169.94890-1.1482018.7694016.58130HepG2ADAR
TRNP1ENSG00000253368.35054.801502080.335501.2807024.4077023.00140HepG2AKAP1
TRNP1ENSG00000253368.33781.760602402.469000.654407.403405.75790HepG2AKAP8
TRNP1ENSG00000253368.31666.829801269.397900.392905.837504.76110HepG2AKAP8L
TRNP1ENSG00000253368.33162.927901916.854400.7224012.292509.65860HepG2ATP5C1
TRNP1ENSG00000253368.31814.874901551.208900.226402.499201.84090HepG2AUH
TRNP1ENSG00000253368.31471.88520902.016900.706306.217004.78510HepG2BCCIP
TRNP1ENSG00000253368.31517.61040783.734700.9533011.342109.68600HepG2BCLAF1
TRNP1ENSG00000253368.36455.576401777.242201.8608019.9580018.57290HepG2BOP1
TRNP1ENSG00000253368.33013.444301615.461100.8994023.1058021.29430HepG2CALR
TRNP1ENSG00000253368.31415.864102120.03880-0.582403.191902.14000HepG2CCAR1
TRNP1ENSG00000253368.3759.342001635.34180-1.1068018.5311016.74110HepG2CIRBP
TRNP1ENSG00000253368.3956.856501263.17430-0.400706.193405.27040HepG2CKAP4
TRNP1ENSG00000253368.32407.320001171.144501.039405.358204.29140HepG2CNOT7
TRNP1ENSG00000253368.34611.437001631.678701.4988035.1560033.09780HepG2CPSF6
TRNP1ENSG00000253368.33282.412201749.354000.9078011.964509.86310HepG2CPSF7
TRNP1ENSG00000253368.31731.328701374.189100.333204.157603.40000HepG2CELF1
TRNP1ENSG00000253368.32973.826401477.617601.0089052.1367049.77240HepG2DAZAP1
TRNP1ENSG00000253368.3883.054601168.54420-0.404106.055304.88930HepG2DDX19B
TRNP1ENSG00000253368.32014.718001201.437700.745703.704602.37320HepG2DDX1
TRNP1ENSG00000253368.3468.48920804.74720-0.780509.040907.88830HepG2DDX21
TRNP1ENSG00000253368.33359.115901992.754200.7532010.223009.08710HepG2DDX3X
TRNP1ENSG00000253368.31321.63450886.894600.575404.250903.31370HepG2DDX55
TRNP1ENSG00000253368.31199.920901852.86670-0.626802.946601.93890HepG2DDX59
TRNP1ENSG00000253368.32451.129201868.538400.391403.540702.40240HepG2DDX5
TRNP1ENSG00000253368.33248.612201711.934500.9241012.9660011.74930HepG2DDX6
TRNP1ENSG00000253368.31882.188901136.255900.7280011.280209.47740HepG2DHX30
TRNP1ENSG00000253368.3515.102601208.83070-1.2307034.7144033.01360HepG2DKC1
TRNP1ENSG00000253368.32292.676901178.074500.9605029.4982027.48180HepG2DNAJC21
TRNP1ENSG00000253368.31412.582901167.688600.274603.521402.80090HepG2DNAJC2
TRNP1ENSG00000253368.31069.99310812.118400.397702.939201.79800HepG2EFTUD2
TRNP1ENSG00000253368.31270.37220740.941600.777707.156605.41100HepG2AGO1
TRNP1ENSG00000253368.34828.655801645.607601.5529034.0371032.11310HepG2EIF2S1
TRNP1ENSG00000253368.31888.18010790.787301.2555024.1598021.80520HepG2EIF3D
TRNP1ENSG00000253368.3572.64000759.86470-0.408103.269102.10420HepG2EIF3G
TRNP1ENSG00000253368.31200.228101840.20140-0.616607.813006.10860HepG2ESF1
TRNP1ENSG00000253368.34223.361201780.954001.2456067.0868064.87950HepG2ETF1
TRNP1ENSG00000253368.32247.946001234.622000.8644017.6185015.64960HepG2EWSR1
TRNP1ENSG00000253368.31393.22520766.825400.8614014.1546011.93190HepG2FASTKD2
TRNP1ENSG00000253368.33289.696902145.156600.616806.437505.31010HepG2FIP1L1
TRNP1ENSG00000253368.31035.92710738.177400.488803.202701.83980HepG2FKBP4
TRNP1ENSG00000253368.31870.601801382.377400.436303.364101.53680HepG2FMR1
TRNP1ENSG00000253368.3776.576401379.38510-0.8288010.938509.42370HepG2FUBP3
TRNP1ENSG00000253368.3782.255501126.70060-0.526403.209902.00550HepG2FUS
TRNP1ENSG00000253368.31100.755301834.99470-0.737309.044207.85860HepG2FXR1
TRNP1ENSG00000253368.32327.151901702.136900.451103.717202.94940HepG2G3BP1
TRNP1ENSG00000253368.3872.757201807.15380-1.0501017.3557015.18630HepG2G3BP2
TRNP1ENSG00000253368.31841.909701061.641000.794806.385604.18610HepG2GTF2F1
TRNP1ENSG00000253368.32022.793201079.544800.905806.877804.60990HepG2HLTF
TRNP1ENSG00000253368.3751.209001189.36100-0.662908.252607.22260HepG2HNRNPA1
TRNP1ENSG00000253368.31688.128201357.959900.313902.254401.40170HepG2HNRNPA2B1
TRNP1ENSG00000253368.31713.253101322.949800.372903.293002.54220HepG2HNRNPC
TRNP1ENSG00000253368.3601.256201723.77740-1.5195035.6401033.42750HepG2HNRNPK
TRNP1ENSG00000253368.31019.864201346.00470-0.400306.579105.58380HepG2HNRNPL
TRNP1ENSG00000253368.32379.397501765.314700.430602.806402.17270HepG2HNRNPLL
TRNP1ENSG00000253368.32014.394201479.956800.444704.503303.32230HepG2HNRNPM
TRNP1ENSG00000253368.31056.113001314.20280-0.315403.835203.13180HepG2HNRNPU
TRNP1ENSG00000253368.32585.930901095.883001.238504.336001.44480HepG2HNRNPUL1
TRNP1ENSG00000253368.32366.862301342.413700.8180034.5644032.36750HepG2ILF2
TRNP1ENSG00000253368.31689.738401141.637900.565603.762702.19550HepG2ILF3
TRNP1ENSG00000253368.3750.476901115.38080-0.571704.211302.68570HepG2KHDRBS1
TRNP1ENSG00000253368.31164.97460645.311900.8521011.709608.69120HepG2CCAR2
TRNP1ENSG00000253368.33955.896702239.978800.820409.524907.98350HepG2LARP4
TRNP1ENSG00000253368.31221.36150714.239800.7739010.550508.46410HepG2LARP7
TRNP1ENSG00000253368.31099.24540749.978800.551505.432703.73420HepG2LIN28B
TRNP1ENSG00000253368.31014.24050716.565700.501103.682101.71330HepG2LSM11
TRNP1ENSG00000253368.31288.74390827.657600.638803.879602.63750HepG2METAP2
TRNP1ENSG00000253368.32761.765801799.951200.617504.549303.28320HepG2MTPAP
TRNP1ENSG00000253368.33466.703902478.934700.483703.279101.71260HepG2NKRF
TRNP1ENSG00000253368.31737.372801465.201100.245702.159401.48410HepG2NOL12
TRNP1ENSG00000253368.31033.360101565.14280-0.599002.438501.73570HepG2NSUN2
TRNP1ENSG00000253368.33588.880602519.444700.510306.352104.02890HepG2NUP35
TRNP1ENSG00000253368.32325.175001682.477200.466704.129303.25840HepG2PABPC4
TRNP1ENSG00000253368.31560.933001300.828800.262902.858001.99770HepG2PARN
TRNP1ENSG00000253368.31137.23770685.353000.730506.340103.91550HepG2PHF6
TRNP1ENSG00000253368.3975.684601172.16290-0.264702.309701.62920HepG2PPIL4
TRNP1ENSG00000253368.31136.258101574.39730-0.470507.105605.93500HepG2PRPF4
TRNP1ENSG00000253368.3802.226901121.30110-0.483102.588101.40390HepG2PRPF6
TRNP1ENSG00000253368.32291.250301736.909100.399505.056904.36350HepG2PTBP1
TRNP1ENSG00000253368.31045.394601398.65520-0.420004.083403.37490HepG2PUF60
TRNP1ENSG00000253368.32427.619301484.725400.7092026.0201024.57600HepG2PUM1
TRNP1ENSG00000253368.31096.997701483.64640-0.435603.768302.99090HepG2PUM2
TRNP1ENSG00000253368.32675.194401029.386901.3778014.8884013.37760HepG2RAVER1
TRNP1ENSG00000253368.32105.203601488.556700.499908.807008.00310HepG2RBM22
TRNP1ENSG00000253368.3728.195201130.94680-0.635103.897702.08340HepG2RBM47
TRNP1ENSG00000253368.31030.359501933.08560-0.9078019.0455017.87410HepG2NELFE
TRNP1ENSG00000253368.3683.998401800.27500-1.3962041.0601039.24670HepG2RECQL
TRNP1ENSG00000253368.33429.700002058.309300.7365011.9163010.67210HepG2RPLP0
TRNP1ENSG00000253368.31358.769801011.026200.426402.153201.31860HepG2RPS10
TRNP1ENSG00000253368.31576.13910769.436101.0344021.3872019.93150HepG2RPS19
TRNP1ENSG00000253368.31166.92830794.311000.554805.224304.14520HepG2RPS2
TRNP1ENSG00000253368.31839.717201175.473900.646105.192104.09500HepG2RPS3A
TRNP1ENSG00000253368.31117.94250810.811200.463303.810802.53660HepG2RPS5
TRNP1ENSG00000253368.31555.14260676.640401.2005017.4160015.75880HepG2RRP9
TRNP1ENSG00000253368.31304.60920772.303900.756309.430707.72500HepG2SERBP1
TRNP1ENSG00000253368.3924.120201713.55220-0.890808.294807.07790HepG2SF3A3
TRNP1ENSG00000253368.31493.829201808.50310-0.275803.270302.63370HepG2SF3B4
TRNP1ENSG00000253368.31983.383001364.823100.539109.621508.53710HepG2SMN1
TRNP1ENSG00000253368.32848.626001036.899701.457904.146902.46660HepG2SNRNP200
TRNP1ENSG00000253368.32741.480701944.279600.495603.103802.27620HepG2SNRNP70
TRNP1ENSG00000253368.32099.710301681.285200.320505.118104.49560HepG2SRFBP1
TRNP1ENSG00000253368.3667.311701887.62180-1.5001040.5444039.19880HepG2SRSF1
TRNP1ENSG00000253368.31167.645101879.90910-0.687102.651401.67440HepG2SRSF3
TRNP1ENSG00000253368.31935.008201535.625900.333402.419001.89570HepG2SRSF9
TRNP1ENSG00000253368.3425.568201459.78030-1.7783076.2693074.52800HepG2SSB
TRNP1ENSG00000253368.32977.388401432.663401.055205.868304.14190HepG2STAU1
TRNP1ENSG00000253368.31798.74470961.965000.902807.951905.98580HepG2SUB1
TRNP1ENSG00000253368.32004.971201570.538400.352206.014705.16140HepG2SUCLG1
TRNP1ENSG00000253368.34057.813201448.363801.4862032.4802029.76260HepG2SUPT6H
TRNP1ENSG00000253368.32131.80700882.851801.2717021.1584019.60180HepG2SUPV3L1
TRNP1ENSG00000253368.3647.651801696.49080-1.3893041.7672039.93210HepG2TAF15
TRNP1ENSG00000253368.32764.044701720.101100.684205.001604.06900HepG2TARDBP
TRNP1ENSG00000253368.31558.50120591.721401.3971024.0874021.81840HepG2TFIP11
TRNP1ENSG00000253368.31261.097501559.03200-0.306002.859202.01010HepG2TIA1
TRNP1ENSG00000253368.3925.549501276.97250-0.464303.502102.95320HepG2TIAL1
TRNP1ENSG00000253368.32290.985001288.410400.8303026.6711025.14370HepG2TRIM56
TRNP1ENSG00000253368.31252.794901834.94330-0.550606.087105.17220HepG2U2AF1
TRNP1ENSG00000253368.31947.592501446.316600.429203.093602.20830HepG2UBE2L3
TRNP1ENSG00000253368.3745.28560521.501700.515003.633902.76590HepG2UCHL5
TRNP1ENSG00000253368.32827.378901519.660200.8956036.2197034.29750HepG2UPF1
TRNP1ENSG00000253368.32410.727801561.987800.626004.757503.42130HepG2UTP18
TRNP1ENSG00000253368.32139.748801467.170100.544303.600102.93190HepG2UTP3
TRNP1ENSG00000253368.31541.728501052.845300.550203.691102.41960HepG2XPO5
TRNP1ENSG00000253368.3414.98450869.07190-1.0664013.5913012.00080HepG2XRN2
TRNP1ENSG00000253368.33107.345201671.333400.8946030.1841028.87430HepG2ZNF622
TRNP1ENSG00000253368.316.2030062.09480-1.938205.464603.73770K562ABCF1
TRNP1ENSG00000253368.35.7616039.45840-2.775805.379904.15180K562BOP1
TRNP1ENSG00000253368.32.3598017.30700-2.874602.759001.48190K562EEF2
TRNP1ENSG00000253368.316.7763040.04850-1.255302.123001.42430K562GPKOW
TRNP1ENSG00000253368.363.8465029.177901.129602.405501.69850K562GRSF1
TRNP1ENSG00000253368.357.7796017.528601.720804.654603.48870K562HNRNPU
TRNP1ENSG00000253368.337.6946013.802001.449402.261101.42130K562TIAL1
TRNP1ENSG00000253368.317.5434038.15310-1.120901.905201.30130K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRNP1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRNP1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRNP1 is not avaliable on ENCORE database.