PDZK1

General Information

Gene Name       : PDZK1
Gene ID             : ENSG00000174827.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDZK1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDZK1ENSG00000174827.130.100.180.14ENCSR000AEF
HepG2PDZK1ENSG00000174827.1328.5442.7335.63ENCSR985KAT
K562PDZK1ENSG00000174827.130.020.030.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDZK1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDZK1 RNA is bound by 4 proteins.  







eCLIP assay for PDZK1 is not avaliable on ENCORE database.





4 proteins are bound to PDZK1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1145747042145747104+3'-UTR,5'-UTR,CDS4.344335.11007HepG2GRWD1
chr1145747037145747093+3'-UTR,5'-UTR,CDS,intron-Proximal4.113908.51432HepG2BCLAF1
chr1145727708145727752+5'-UTR,intron-Proximal3.783793.14999HepG2GRWD1
chr1145747093145747159+CDS4.215077.49468HepG2BCLAF1
chr1145747211145747254+CDS,intron-Proximal3.242595.00751HepG2BCLAF1
chr1145747104145747166+CDS4.153734.69889HepG2GRWD1
chr1145761251145761317+CDS3.087726.07405HepG2GRWD1
chr1145748491145748588+CDS,intron-Proximal3.953965.97823HepG2BCLAF1
chr1145738304145738366+intron-Distal3.761063.04224HepG2SUGP2
chr1145745082145745129+intron-Distal3.809023.39864HepG2SUGP2
chr1145737695145737758+intron-Distal4.206189.41297HepG2PTBP1
chr1145739590145739679+intron-Distal3.944538.52957HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDZK1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDZK1 is not available on ENCORE database.

  • 140 RBPs can affect the levels of PDZK1.  








The Knockdown/knockout RNA-Seq assay for PDZK1 is not available on ENCORE database.





140 RBPs can affect the gene expression of PDZK1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDZK1ENSG00000174827.9393.68040846.77770-1.1050016.3765014.10830HepG2AATF
PDZK1ENSG00000174827.92283.357601239.296600.8815012.8597011.08070HepG2ABCF1
PDZK1ENSG00000174827.9181.856601075.77600-2.56450112.12030109.75110HepG2ACO1
PDZK1ENSG00000174827.9909.28570488.785700.895406.613105.15400HepG2ADAR
PDZK1ENSG00000174827.9168.359203434.73600-4.3506049.0322047.21720HepG2AKAP1
PDZK1ENSG00000174827.9930.325601577.18330-0.761508.082906.39410HepG2AKAP8
PDZK1ENSG00000174827.9744.247601080.71560-0.538108.118006.88960HepG2AKAP8L
PDZK1ENSG00000174827.91251.06330568.273601.138406.359403.62510HepG2APOBEC3C
PDZK1ENSG00000174827.91895.326102842.09900-0.584503.549002.66210HepG2ASCC1
PDZK1ENSG00000174827.9497.54620678.73140-0.448002.655301.73920HepG2BCCIP
PDZK1ENSG00000174827.91165.68930589.718400.9830011.412009.75220HepG2BCLAF1
PDZK1ENSG00000174827.91513.074201075.404300.492509.829808.73080HepG2CKAP4
PDZK1ENSG00000174827.9252.51310608.63890-1.269203.676302.78890HepG2CNOT7
PDZK1ENSG00000174827.91394.66640678.825001.0387016.7645015.23580HepG2CPSF6
PDZK1ENSG00000174827.9653.147701020.61680-0.644007.347705.63530HepG2CPSF7
PDZK1ENSG00000174827.9632.22780501.247500.334802.364201.42710HepG2YBX3
PDZK1ENSG00000174827.9522.955201046.00040-1.0001021.1089019.66920HepG2CELF1
PDZK1ENSG00000174827.91387.41100994.875300.479709.036207.69030HepG2DDX19B
PDZK1ENSG00000174827.92557.04920933.916101.4530041.8005039.63030HepG2DDX21
PDZK1ENSG00000174827.91564.44300914.187700.7750013.1457011.21670HepG2DDX24
PDZK1ENSG00000174827.91111.87160624.363700.832406.766904.84270HepG2DDX27
PDZK1ENSG00000174827.91733.446803290.52490-0.924706.573605.65170HepG2DDX3X
PDZK1ENSG00000174827.9476.57340667.35800-0.485803.047402.24190HepG2DDX55
PDZK1ENSG00000174827.91956.23630770.860901.343405.577604.20250HepG2DDX59
PDZK1ENSG00000174827.92451.04390962.514901.3484032.1418029.47940HepG2DDX5
PDZK1ENSG00000174827.9398.861702825.90460-2.8248030.7068028.98060HepG2DDX6
PDZK1ENSG00000174827.91186.80520474.707801.3219027.4854025.05170HepG2DHX30
PDZK1ENSG00000174827.92358.195901029.190501.1961048.8293046.90540HepG2DKC1
PDZK1ENSG00000174827.9724.17260487.846200.569808.120307.07570HepG2DNAJC2
PDZK1ENSG00000174827.91059.92510829.651900.353302.292701.45190HepG2EEF2
PDZK1ENSG00000174827.9588.41640940.13320-0.676008.015206.15090HepG2EIF2S2
PDZK1ENSG00000174827.9161.73400673.49570-2.0580033.9349031.13990HepG2EIF3D
PDZK1ENSG00000174827.91223.38250882.119100.471705.156003.73540HepG2EIF3G
PDZK1ENSG00000174827.91844.294403003.31630-0.703504.389903.58910HepG2EIF4A3
PDZK1ENSG00000174827.9904.644702923.48620-1.6923015.1221013.59280HepG2EIF4B
PDZK1ENSG00000174827.91819.925301109.582600.7138017.7369016.00570HepG2EIF4G1
PDZK1ENSG00000174827.91812.374501062.896700.7698011.305409.72600HepG2EIF4G2
PDZK1ENSG00000174827.92211.242201073.562501.0424020.3784017.87890HepG2ESF1
PDZK1ENSG00000174827.91882.434301659.114600.182101.817401.30910HepG2ETF1
PDZK1ENSG00000174827.91061.085501408.43640-0.408603.754401.41690HepG2EXOSC5
PDZK1ENSG00000174827.9459.20720601.93160-0.390502.843501.65850HepG2FAM120A
PDZK1ENSG00000174827.9313.182901251.39760-1.9985039.4274037.20180HepG2FIP1L1
PDZK1ENSG00000174827.9972.88860555.446700.808507.646705.69690HepG2FKBP4
PDZK1ENSG00000174827.91470.41230680.021401.112506.126604.61760HepG2FTO
PDZK1ENSG00000174827.91020.488901803.09860-0.8212014.3465012.61610HepG2FUBP3
PDZK1ENSG00000174827.9611.709301098.80230-0.845005.483903.94830HepG2FUS
PDZK1ENSG00000174827.9622.844703029.16810-2.2820023.2760021.48930HepG2FXR1
PDZK1ENSG00000174827.91172.255202810.55110-1.2616010.430909.18110HepG2G3BP1
PDZK1ENSG00000174827.92344.34920769.457701.6072035.2485033.27020HepG2GPKOW
PDZK1ENSG00000174827.91211.70680725.334900.740207.066404.32720HepG2GRWD1
PDZK1ENSG00000174827.9634.292801035.14870-0.706604.522302.56880HepG2GTF2F1
PDZK1ENSG00000174827.9721.261701026.97450-0.509807.418005.91410HepG2HDGF
PDZK1ENSG00000174827.9839.61210513.937300.708003.586502.01160HepG2HNRNPA0
PDZK1ENSG00000174827.91366.58360496.892201.4595028.7116027.04050HepG2HNRNPA1
PDZK1ENSG00000174827.91199.89980552.705801.1182019.1311017.47770HepG2HNRNPC
PDZK1ENSG00000174827.91516.80990568.202101.4165051.5438049.21520HepG2HNRNPF
PDZK1ENSG00000174827.9812.822602844.64530-1.8072019.0427017.36050HepG2HNRNPK
PDZK1ENSG00000174827.9623.137301024.42450-0.7172014.3267012.90350HepG2HNRNPL
PDZK1ENSG00000174827.92458.71550734.311601.7433035.1367033.29080HepG2HNRNPLL
PDZK1ENSG00000174827.9311.42080863.42570-1.4712029.2921026.87300HepG2HNRNPM
PDZK1ENSG00000174827.91230.70590549.051301.1644034.2723032.35340HepG2HNRNPU
PDZK1ENSG00000174827.91862.74660559.513101.7351060.9257058.34110HepG2IGF2BP1
PDZK1ENSG00000174827.91639.031102857.06060-0.801705.207304.30740HepG2IGF2BP2
PDZK1ENSG00000174827.9472.775702680.43500-2.5032023.8654021.29940HepG2IGF2BP3
PDZK1ENSG00000174827.91906.940002873.34660-0.591503.582002.42060HepG2KHSRP
PDZK1ENSG00000174827.9392.09350765.51190-0.9652012.3443010.11270HepG2LARP7
PDZK1ENSG00000174827.91295.915603030.22090-1.2255010.380109.13470HepG2MAGOH
PDZK1ENSG00000174827.9564.776603047.35180-2.4318024.7567023.02910HepG2MATR3
PDZK1ENSG00000174827.9354.89690704.87620-0.990007.085105.48470HepG2METAP2
PDZK1ENSG00000174827.9824.155201012.82340-0.297402.091301.38360HepG2MSI2
PDZK1ENSG00000174827.91543.27840748.997001.042903.284902.22240HepG2MTPAP
PDZK1ENSG00000174827.91327.374703119.27320-1.2326010.267909.08840HepG2NCBP2
PDZK1ENSG00000174827.9593.985401115.18190-0.9088016.8176015.03080HepG2NOL12
PDZK1ENSG00000174827.91120.80790651.139100.783409.362708.04690HepG2NSUN2
PDZK1ENSG00000174827.9168.82300556.06670-1.719705.536804.25040HepG2PABPC1
PDZK1ENSG00000174827.91824.634102778.55540-0.606703.484902.68050HepG2PABPC4
PDZK1ENSG00000174827.9224.32170543.46030-1.2766021.2489019.33980HepG2PARN
PDZK1ENSG00000174827.91436.648602810.97000-0.9684038.1025036.30770HepG2PCBP1
PDZK1ENSG00000174827.9654.752401040.24260-0.667903.882902.65860HepG2PCBP2
PDZK1ENSG00000174827.91040.80770734.505400.502803.237201.41960HepG2PHF6
PDZK1ENSG00000174827.9721.39310489.709000.558806.287805.21040HepG2PPIL4
PDZK1ENSG00000174827.91859.49980870.380901.0951037.3360035.18340HepG2PRPF4
PDZK1ENSG00000174827.9981.66990514.684400.9314010.293608.86300HepG2PRPF8
PDZK1ENSG00000174827.91167.116702860.21710-1.2932061.6936059.89300HepG2PTBP1
PDZK1ENSG00000174827.93018.782001064.561001.5036050.0323047.89860HepG2PUF60
PDZK1ENSG00000174827.9404.591901130.10460-1.4819053.9902052.06500HepG2PUM1
PDZK1ENSG00000174827.9607.458701129.26290-0.8945015.3085013.81060HepG2PUM2
PDZK1ENSG00000174827.91855.750301095.727500.7600022.1050020.66980HepG2PUS1
PDZK1ENSG00000174827.92702.758403097.79220-0.196801.894101.36200HepG2QKI
PDZK1ENSG00000174827.9156.458301004.05200-2.6820021.9068020.09730HepG2RAVER1
PDZK1ENSG00000174827.91011.566201392.55010-0.461105.315804.17370HepG2RBM15
PDZK1ENSG00000174827.9464.358101386.73190-1.5784032.8811031.48370HepG2RBM22
PDZK1ENSG00000174827.9354.74000923.08310-1.3797022.6353019.88460HepG2RBM27
PDZK1ENSG00000174827.91900.701803183.18850-0.7439014.6989013.63760HepG2NELFE
PDZK1ENSG00000174827.91593.377502964.63220-0.8958033.6665031.96800HepG2RECQL
PDZK1ENSG00000174827.91740.10290612.149301.5071037.0297035.19770HepG2RPLP0
PDZK1ENSG00000174827.91505.91700985.931300.611003.987302.85490HepG2RPS10
PDZK1ENSG00000174827.9315.18020655.34040-1.0561014.1545012.90480HepG2RPS19
PDZK1ENSG00000174827.91957.06710610.462401.6806028.5451026.11040HepG2RPS3A
PDZK1ENSG00000174827.9450.95210869.02040-0.9464011.569209.38760HepG2RPS5
PDZK1ENSG00000174827.9310.05630488.95140-0.657206.937205.98460HepG2SAFB2
PDZK1ENSG00000174827.91075.71760580.317900.890305.313403.24330HepG2SBDS
PDZK1ENSG00000174827.9938.43570657.737000.512604.278003.11750HepG2SERBP1
PDZK1ENSG00000174827.91011.587801943.23220-0.9418010.016608.67360HepG2SF3A3
PDZK1ENSG00000174827.91497.79140726.798401.0431017.9632016.33330HepG2SF3B1
PDZK1ENSG00000174827.91186.260802977.94480-1.3279067.1009064.93950HepG2SF3B4
PDZK1ENSG00000174827.9438.314801840.34910-2.0699010.129607.15540HepG2SFPQ
PDZK1ENSG00000174827.91641.308701020.801500.685009.552508.37340HepG2SLBP
PDZK1ENSG00000174827.9316.41970570.19480-0.8496012.7590011.53470HepG2SMN1
PDZK1ENSG00000174827.91271.908401566.29640-0.300401.816701.38500HepG2SRFBP1
PDZK1ENSG00000174827.91620.317303108.29310-0.9398040.2881038.94600HepG2SRSF1
PDZK1ENSG00000174827.9327.118501051.13010-1.6841052.5199050.28330HepG2SRSF5
PDZK1ENSG00000174827.91771.58140558.252801.6659074.9219072.51610HepG2SRSF7
PDZK1ENSG00000174827.9522.242202528.73050-2.27560162.34030159.50200HepG2SRSF9
PDZK1ENSG00000174827.94648.999801359.975101.7732052.2179050.67710HepG2SSB
PDZK1ENSG00000174827.9998.503901711.00090-0.777008.625306.53970HepG2SSRP1
PDZK1ENSG00000174827.91699.48500835.872501.0236011.559409.25620HepG2STAU1
PDZK1ENSG00000174827.9611.03490938.25790-0.618703.121001.83710HepG2SUB1
PDZK1ENSG00000174827.9466.008001195.39780-1.3591044.7929042.82650HepG2SUCLG1
PDZK1ENSG00000174827.91057.65400845.024200.323702.607401.69410HepG2SUPT6H
PDZK1ENSG00000174827.91044.08410664.307400.652205.043404.17340HepG2SUPV3L1
PDZK1ENSG00000174827.91779.839202793.75350-0.6505015.4367014.27310HepG2TAF15
PDZK1ENSG00000174827.91685.13300715.841301.2351016.3493014.84060HepG2TARDBP
PDZK1ENSG00000174827.91308.863102567.18660-0.9719024.3454021.92520HepG2TIA1
PDZK1ENSG00000174827.91006.90020533.486600.9163016.0360015.01110HepG2TIAL1
PDZK1ENSG00000174827.9324.94780535.17310-0.719805.019202.93450HepG2TROVE2
PDZK1ENSG00000174827.9796.436201040.07360-0.385103.161302.22230HepG2TUFM
PDZK1ENSG00000174827.91082.068901973.51680-0.867002.594501.64020HepG2U2AF2
PDZK1ENSG00000174827.9808.477701100.92950-0.445402.915102.05730HepG2UBE2L3
PDZK1ENSG00000174827.9160.45990392.40140-1.2901013.1939011.55980HepG2UCHL5
PDZK1ENSG00000174827.92139.922101723.350400.312204.849103.96550HepG2UPF1
PDZK1ENSG00000174827.91324.712601771.35930-0.419206.329104.80590HepG2UTP18
PDZK1ENSG00000174827.9833.731101663.82630-0.9969030.9516029.27910HepG2UTP3
PDZK1ENSG00000174827.91226.13300546.753501.165106.775805.06380HepG2XPO5
PDZK1ENSG00000174827.9557.08950986.99920-0.825104.933203.22960HepG2XRCC5
PDZK1ENSG00000174827.9617.543401104.00330-0.838105.267403.82890HepG2XRCC6
PDZK1ENSG00000174827.91570.54650653.938901.2639020.9053019.00050HepG2XRN2
PDZK1ENSG00000174827.91307.08540858.947000.6056012.5658011.30610HepG2ZC3H8
PDZK1ENSG00000174827.9777.088101895.35480-1.2863064.0016062.28470HepG2ZNF622
PDZK1ENSG00000174827.9104.970001.852105.8245024.9815023.40700K562AQR
PDZK1ENSG00000174827.913.550401.582003.098402.208701.66660K562HNRNPC
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDZK1 is not available on ENCORE database.





8 RBPs can affect the splicing of PDZK1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPDZK1ENSG00000174827.9chr1+145752427145752564145748337145748587145753954145754150-0.081000.000200.02408excludedHepG2G3BP1
SEPDZK1ENSG00000174827.9chr1+1457588451457589011457564161457566131457611771457614020.486000.000000.00000includedHepG2HNRNPK
SEPDZK1ENSG00000174827.9chr1+145752427145752564145748337145748587145753954145754150-0.133000.000000.00007excludedHepG2HNRNPK
SEPDZK1ENSG00000174827.9chr1+1457634191457634671457620381457623291457635691457636320.073000.000450.06961includedHepG2TIA1
SEPDZK1ENSG00000174827.9chr1+145752427145752564145748337145748587145753954145754150-0.086000.001230.04978excludedHepG2MATR3
SEPDZK1ENSG00000174827.9chr1+1457634191457634671457620381457623291457635691457636320.059000.000880.02302includedHepG2SRSF1
SEPDZK1ENSG00000174827.9chr1+1457524271457525641457483371457485871457539541457541500.079000.004120.09139includedHepG2SF3A3
SEPDZK1ENSG00000174827.9chr1+145752427145752564145748337145748587145753954145754150-0.081000.001690.07166excludedHepG2PCBP1
SEPDZK1ENSG00000174827.9chr1+1457588451457589011457564161457566131457611771457614020.267000.000140.00973includedHepG2SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PDZK1 is not avaliable on ENCORE database.