YPEL3

General Information

Gene Name       : YPEL3
Gene ID             : ENSG00000090238.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: YPEL3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YPEL3ENSG00000090238.111.004.192.60ENCSR000AEF
HepG2YPEL3ENSG00000090238.1110.813.757.28ENCSR985KAT
K562YPEL3ENSG00000090238.113.161.962.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for YPEL3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • YPEL3 RNA is bound by 13 proteins.  







eCLIP assay for YPEL3 is not avaliable on ENCORE database.





13 proteins are bound to YPEL3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr163010634630106413-3'-UTR,intron-Distal,intron-Proximal4.174778.58430K562EFTUD2
chr163010383630103895-3'-UTR,intron-Distal,intron-Proximal5.006435.77022K562DDX6
chr163010367630103756-3'-UTR,intron-Distal3.458464.54145K562DDX6
chr163010674430106813-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.4818412.02813K562SF3B4
chr163010383530103896-3'-UTR,intron-Distal,intron-Proximal3.600973.46181K562DDX55
chr163010634030106426-3'-UTR,CDS,intron-Distal,intron-Proximal5.1725817.55185K562AQR
chr163010673630106759-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.475904.41130K562AQR
chr163010641830106473-3'-UTR,CDS,intron-Distal,intron-Proximal3.669334.79829K562EFTUD2
chr163010411430104171-3'-UTR,CDS,intron-Distal5.072038.23487HepG2SF3B4
chr163010383530103896-3'-UTR,intron-Distal,intron-Proximal3.446705.43987HepG2DDX55
chr163010383330103896-3'-UTR,intron-Distal,intron-Proximal4.329183.28818K562LSM11
chr163010364330103696-3'-UTR,intron-Distal,intron-Proximal6.3163117.51182K562PUM2
chr163010407430104117-3'-UTR,CDS,intron-Distal,intron-Proximal4.647523.28061K562DDX55
chr163010613930106258-3'-UTR,CDS,intron-Distal,intron-Proximal3.052447.68856K562BUD13
chr163010389230103971-3'-UTR,intron-Distal,intron-Proximal6.5167533.40586K562PUM2
chr163010384430103892-3'-UTR,intron-Distal,intron-Proximal5.5733127.44982K562PUM2
chr163010637730106456-3'-UTR,CDS,intron-Distal,intron-Proximal3.446386.98138HepG2PRPF8
chr163010668830106744-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.176956.00009K562SF3B4
chr163010409630104168-3'-UTR,CDS,intron-Distal,intron-Proximal4.654168.54916K562SF3B4
chr163010617030106241-3'-UTR,CDS,intron-Distal,intron-Proximal3.6033114.87906K562AQR
chr163010621130106272-3'-UTR,CDS,intron-Distal,intron-Proximal3.3454711.04437K562SF3B4
chr163010380630103893-3'-UTR,intron-Distal,intron-Proximal5.246728.80058HepG2RBFOX2
chr163010370030103815-3'-UTR,intron-Distal,intron-Proximal3.4151911.45482HepG2DDX55
chr163010737530107419-5'-UTR,intron-Distal,intron-Proximal4.493615.47926K562AQR
chr163010695730107060-5'-UTR,intron-Distal,intron-Proximal3.819244.84707HepG2HNRNPK
chr163010741430107529-5'-UTR,intron-Distal,intron-Proximal4.745918.90399HepG2DDX3X
chr163010677830106837-5'-UTR,CDS,intron-Distal,intron-Proximal3.572756.71512HepG2SF3B4
chr163010723730107308-5'-UTR,intron-Distal5.261536.72851K562AATF
chr163010622230106278-intron-Distal,intron-Proximal5.055596.55633HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for YPEL3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YPEL3 is not available on ENCORE database.

  • 136 RBPs can affect the levels of YPEL3.  








The Knockdown/knockout RNA-Seq assay for YPEL3 is not available on ENCORE database.





136 RBPs can affect the gene expression of YPEL3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YPEL3ENSG00000090238.7389.45550573.00820-0.557103.636602.56140HepG2ABCF1
YPEL3ENSG00000090238.7312.25160443.65710-0.506704.312403.58570HepG2ACO1
YPEL3ENSG00000090238.7294.29620678.92000-1.206003.908003.29210HepG2AKAP1
YPEL3ENSG00000090238.7552.48310176.926301.6427024.0390022.55210HepG2BOP1
YPEL3ENSG00000090238.7260.29420533.65770-1.035803.267202.43080HepG2CIRBP
YPEL3ENSG00000090238.7578.39680443.555600.382803.361602.64080HepG2CKAP4
YPEL3ENSG00000090238.7277.06120162.420700.770404.140703.31540HepG2CPSF6
YPEL3ENSG00000090238.7508.66470338.035900.589406.253605.20350HepG2DAZAP1
YPEL3ENSG00000090238.7280.69150410.31690-0.547804.969103.89690HepG2DDX19B
YPEL3ENSG00000090238.7117.52320271.97870-1.210507.752306.67470HepG2DDX21
YPEL3ENSG00000090238.7167.55350266.49290-0.669502.796501.87730HepG2DDX24
YPEL3ENSG00000090238.7333.48610184.443100.854403.796402.65630HepG2DDX59
YPEL3ENSG00000090238.7932.96600558.886700.739204.837304.04140HepG2DDX6
YPEL3ENSG00000090238.7346.52380208.181900.735002.764502.06190HepG2DNAJC21
YPEL3ENSG00000090238.7266.99550206.322600.371801.925801.36400HepG2DNAJC2
YPEL3ENSG00000090238.7166.22480257.06730-0.629002.841001.74670HepG2EIF3G
YPEL3ENSG00000090238.7604.13810836.80650-0.470003.307101.38780HepG2EIF3H
YPEL3ENSG00000090238.7559.63680319.470700.808704.974603.90310HepG2EIF4G2
YPEL3ENSG00000090238.790.83120248.36210-1.451204.213003.09520HepG2GEMIN5
YPEL3ENSG00000090238.7297.12910184.096700.690503.347002.64700HepG2GPKOW
YPEL3ENSG00000090238.7557.55490423.562400.396403.294702.23460HepG2HDGF
YPEL3ENSG00000090238.7120.91570210.17610-0.797603.628902.90290HepG2HNRNPA1
YPEL3ENSG00000090238.7630.84030212.062101.5727032.8169030.81160HepG2HNRNPF
YPEL3ENSG00000090238.7944.53260563.022900.746304.216403.36990HepG2HNRNPK
YPEL3ENSG00000090238.7452.34970307.922300.554805.085004.19390HepG2HNRNPL
YPEL3ENSG00000090238.7354.14340175.688701.011206.552905.62940HepG2HNRNPLL
YPEL3ENSG00000090238.7203.03400399.09490-0.975009.294307.72720HepG2HNRNPM
YPEL3ENSG00000090238.7389.55890232.230000.746207.104706.16860HepG2HNRNPU
YPEL3ENSG00000090238.7515.47160208.817201.3036018.0695016.40480HepG2IGF2BP1
YPEL3ENSG00000090238.7346.60900237.216500.547004.131203.25310HepG2ILF2
YPEL3ENSG00000090238.7535.51030405.555000.400903.507402.36020HepG2KIF1C
YPEL3ENSG00000090238.7316.09960599.23040-0.922702.649502.00770HepG2MAGOH
YPEL3ENSG00000090238.7245.27970602.50280-1.296504.342103.56880HepG2MATR3
YPEL3ENSG00000090238.7265.77110468.10880-0.816707.665606.38260HepG2MSI2
YPEL3ENSG00000090238.7273.23910179.223000.608302.204901.34630HepG2MTPAP
YPEL3ENSG00000090238.7362.22880244.504000.566902.313401.36170HepG2PCBP2
YPEL3ENSG00000090238.7446.78360207.131901.1089014.3835012.77760HepG2PPIL4
YPEL3ENSG00000090238.7101.57890256.99870-1.339205.361703.70850HepG2PRPF6
YPEL3ENSG00000090238.7282.18290576.34190-1.0303014.4901013.42970HepG2PTBP1
YPEL3ENSG00000090238.7455.88940339.671700.424403.339802.70140HepG2PUM1
YPEL3ENSG00000090238.7474.27120339.421900.482503.350502.61410HepG2PUM2
YPEL3ENSG00000090238.7277.65480451.89280-0.702706.359505.49420HepG2PUS1
YPEL3ENSG00000090238.7833.88550624.102700.418003.162802.50210HepG2QKI
YPEL3ENSG00000090238.7109.15280215.83200-0.983604.555703.19240HepG2RCC2
YPEL3ENSG00000090238.7278.45120641.37820-1.2038019.4997018.31790HepG2NELFE
YPEL3ENSG00000090238.7427.81870597.42010-0.481704.104603.37280HepG2RECQL
YPEL3ENSG00000090238.7544.42600228.494001.2525014.8519013.50660HepG2RPLP0
YPEL3ENSG00000090238.7275.03950206.815200.411202.104401.52970HepG2SAFB2
YPEL3ENSG00000090238.7240.51810535.43950-1.154605.813004.81220HepG2SF3A3
YPEL3ENSG00000090238.7439.17040173.885601.3365014.2909012.81890HepG2SF3B1
YPEL3ENSG00000090238.7451.63870599.97070-0.409703.151202.52490HepG2SF3B4
YPEL3ENSG00000090238.7413.45860306.812900.430303.122102.38380HepG2SLBP
YPEL3ENSG00000090238.7396.21810241.072500.716703.793802.65990HepG2SMNDC1
YPEL3ENSG00000090238.7421.20130230.074300.872305.078502.86660HepG2SND1
YPEL3ENSG00000090238.7433.94540193.482301.165207.737206.42360HepG2SNRNP70
YPEL3ENSG00000090238.7836.65320572.507600.547204.996504.37910HepG2SRFBP1
YPEL3ENSG00000090238.795.23790626.27040-2.7172060.2746058.71410HepG2SRSF1
YPEL3ENSG00000090238.7345.36240187.134100.883905.063103.66900HepG2SRSF3
YPEL3ENSG00000090238.7637.30460208.355801.6128034.8705032.96250HepG2SRSF7
YPEL3ENSG00000090238.7204.66050497.07310-1.2802020.1568019.04890HepG2SSB
YPEL3ENSG00000090238.71084.04900584.346900.891402.615901.55020HepG2STIP1
YPEL3ENSG00000090238.7252.60520359.30040-0.508303.433802.75500HepG2SUCLG1
YPEL3ENSG00000090238.7606.86840390.551300.635805.301404.01990HepG2SUPT6H
YPEL3ENSG00000090238.7325.94810171.294700.928106.509905.46020HepG2TARDBP
YPEL3ENSG00000090238.7421.22820225.681100.900208.773207.97290HepG2TIAL1
YPEL3ENSG00000090238.7398.55230227.670400.807708.386107.48900HepG2TRIM56
YPEL3ENSG00000090238.7492.33240312.607700.655204.919403.72060HepG2TUFM
YPEL3ENSG00000090238.7490.60650330.893200.568103.130202.24000HepG2UBE2L3
YPEL3ENSG00000090238.7155.0008075.732901.033202.756501.99800HepG2UCHL5
YPEL3ENSG00000090238.786.88860458.44970-2.3995014.3170013.11580HepG2UTP3
YPEL3ENSG00000090238.7137.41980259.47060-0.917003.144702.01090HepG2XRCC6
YPEL3ENSG00000090238.7355.80640522.24620-0.553602.270001.75990HepG2ZNF622
YPEL3ENSG00000090238.7818.88140469.973200.801005.720204.95100K562AGGF1
YPEL3ENSG00000090238.71097.20550516.521901.0868013.1249010.57260K562AKAP8
YPEL3ENSG00000090238.71026.78910489.051201.070006.803305.74270K562AKAP8L
YPEL3ENSG00000090238.7556.65190245.302801.182106.761405.90930K562AQR
YPEL3ENSG00000090238.7769.72210513.175400.584803.398302.37620K562ATP5C1
YPEL3ENSG00000090238.7201.5041075.148601.4229010.582508.69580K562BCLAF1
YPEL3ENSG00000090238.7538.06500130.789102.0404029.8925027.21050K562BOP1
YPEL3ENSG00000090238.7159.3255085.487000.898103.753602.04590K562BUD13
YPEL3ENSG00000090238.7236.20040110.983101.089607.190605.28990K562CCAR1
YPEL3ENSG00000090238.7403.40230166.335101.278007.264204.83290K562CKAP4
YPEL3ENSG00000090238.7652.86650177.183301.8814010.885808.77750K562CNOT7
YPEL3ENSG00000090238.7385.36440139.053301.4705016.7250014.77400K562CPSF6
YPEL3ENSG00000090238.7236.31840118.631900.994104.247001.90830K562CPSF7
YPEL3ENSG00000090238.7153.6196057.011301.429904.494603.10450K562CSTF2
YPEL3ENSG00000090238.7586.67350365.152000.684002.216701.34450K562CELF1
YPEL3ENSG00000090238.7534.87560283.044300.918109.269207.04310K562DDX21
YPEL3ENSG00000090238.7164.4109065.924801.318309.067306.69800K562DDX27
YPEL3ENSG00000090238.7447.82790280.100400.676904.053902.76190K562DDX3X
YPEL3ENSG00000090238.7153.08140238.51810-0.639803.720702.98030K562DDX47
YPEL3ENSG00000090238.7202.27160124.252600.702903.227001.77970K562DHX30
YPEL3ENSG00000090238.7269.8281088.510201.6080012.8205010.68080K562EFTUD2
YPEL3ENSG00000090238.7152.7394096.257800.666002.651501.94470K562EIF2S2
YPEL3ENSG00000090238.758.91040112.88620-0.938302.329201.41390K562EIF3A
YPEL3ENSG00000090238.7385.51260249.629900.626904.473002.81360K562EXOSC5
YPEL3ENSG00000090238.7289.1754088.231301.7125017.4498015.13390K562FIP1L1
YPEL3ENSG00000090238.7277.40770141.476100.971403.032301.84030K562FKBP4
YPEL3ENSG00000090238.7272.26010141.508600.944005.932504.67040K562FMR1
YPEL3ENSG00000090238.7386.28100119.952201.6871015.3253013.02030K562FTO
YPEL3ENSG00000090238.7131.79590304.35840-1.207504.555803.80620K562FXR1
YPEL3ENSG00000090238.7350.90470184.982600.923608.590006.67600K562GLRX3
YPEL3ENSG00000090238.7452.33820132.751401.7686023.4224020.94370K562GPKOW
YPEL3ENSG00000090238.7324.57900128.263201.3394011.177609.63360K562GRSF1
YPEL3ENSG00000090238.7383.41200157.970801.279106.738003.80720K562HLTF
YPEL3ENSG00000090238.7354.85670159.092601.157306.434203.76950K562HNRNPA0
YPEL3ENSG00000090238.7313.26380192.292900.704004.904303.48970K562HNRNPA1
YPEL3ENSG00000090238.7777.16490299.873001.373808.991606.37390K562HNRNPA2B1
YPEL3ENSG00000090238.7294.52220162.396800.858802.759802.16370K562HNRNPC
YPEL3ENSG00000090238.729.9203072.58780-1.278602.478401.59980K562HNRNPM
YPEL3ENSG00000090238.7207.52920115.958300.839604.084402.26760K562ILF3
YPEL3ENSG00000090238.7212.49610112.043500.923305.253203.21280K562KHDRBS1
YPEL3ENSG00000090238.7877.46030518.925900.757704.960103.79270K562KIF1C
YPEL3ENSG00000090238.7212.16350113.380300.903902.763201.83070K562KRR1
YPEL3ENSG00000090238.7839.11470496.804400.756103.165501.99370K562MAK16
YPEL3ENSG00000090238.7275.45790129.584501.087807.701706.20640K562METAP2
YPEL3ENSG00000090238.7365.14630194.484800.908705.076504.00560K562MTPAP
YPEL3ENSG00000090238.7599.02520407.483700.555802.954802.03860K562NAA15
YPEL3ENSG00000090238.7689.81150216.091601.6745042.2117039.90410K562NSUN2
YPEL3ENSG00000090238.7365.73360170.223301.103304.512202.90310K562PABPC1
YPEL3ENSG00000090238.7951.86420262.202601.8600015.9748012.95240K562PABPN1
YPEL3ENSG00000090238.7544.65260317.526800.778402.823601.98340K562PCBP3
YPEL3ENSG00000090238.7239.23520100.183401.255709.402807.64420K562PPIG
YPEL3ENSG00000090238.7714.79620311.630101.197606.345103.84560K562PPP1R8
YPEL3ENSG00000090238.7164.1339086.132700.930102.860302.09960K562PRPF8
YPEL3ENSG00000090238.756.10890167.45720-1.577504.127903.33240K562PTBP1
YPEL3ENSG00000090238.7501.23800337.439100.570802.294101.41860K562PUM2
YPEL3ENSG00000090238.71164.07780484.842101.2635011.3014010.25240K562PUS1
YPEL3ENSG00000090238.71102.67590472.540201.2224011.3242010.14360K562RBM15
YPEL3ENSG00000090238.7767.42120322.567201.250306.693604.01160K562RBM39
YPEL3ENSG00000090238.795.09280217.04430-1.190607.518605.76910K562SAFB
YPEL3ENSG00000090238.7380.77600161.436901.237903.624601.81880K562SBDS
YPEL3ENSG00000090238.7496.94780213.225001.220609.749108.28720K562SF3A3
YPEL3ENSG00000090238.7278.87710122.224201.190009.419607.19880K562SLBP
YPEL3ENSG00000090238.7380.39630172.696301.139206.729803.64280K562SMNDC1
YPEL3ENSG00000090238.7574.91920275.409001.061704.848003.07940K562SNRNP200
YPEL3ENSG00000090238.7345.29470218.453500.660405.084903.86260K562SRPK2
YPEL3ENSG00000090238.7276.88760155.129300.835703.844102.56880K562SRSF5
YPEL3ENSG00000090238.7468.53300252.505500.891709.148307.01210K562SRSF7
YPEL3ENSG00000090238.7214.83160105.844901.021203.034101.71550K562STAU1
YPEL3ENSG00000090238.7387.68540158.014001.294703.840701.90530K562STIP1
YPEL3ENSG00000090238.7971.02590329.369801.559708.489205.59020K562SUPT6H
YPEL3ENSG00000090238.7296.6054083.289101.8322013.5150011.24050K562SUPV3L1
YPEL3ENSG00000090238.740.81450244.29620-2.5815027.8864025.54280K562SYNCRIP
YPEL3ENSG00000090238.7355.86550166.114901.099105.866304.80950K562TARDBP
YPEL3ENSG00000090238.7263.12130160.251300.715303.593002.64180K562TIA1
YPEL3ENSG00000090238.7282.91930140.062901.014203.370002.33230K562TIAL1
YPEL3ENSG00000090238.7333.60670149.005801.162705.533004.08490K562TRIM56
YPEL3ENSG00000090238.7250.53620103.123501.280509.514706.85930K562TRIP6
YPEL3ENSG00000090238.7481.51920239.777401.005806.023704.11500K562TROVE2
YPEL3ENSG00000090238.7227.1403088.204301.364608.187306.36890K562UCHL5
YPEL3ENSG00000090238.7590.97500229.126401.366907.752606.62460K562UPF1
YPEL3ENSG00000090238.7987.02870491.743701.005104.536902.73270K562UTP18
YPEL3ENSG00000090238.7572.32290196.056401.5455010.999009.19760K562WDR3
YPEL3ENSG00000090238.7292.93710203.874600.522803.269602.35680K562WDR43
YPEL3ENSG00000090238.7560.33220290.928900.945503.870202.33410K562WRN
YPEL3ENSG00000090238.772.91870167.06390-1.196004.859902.60730K562XRCC6
YPEL3ENSG00000090238.7174.0697089.900200.953203.096901.79550K562XRN2
YPEL3ENSG00000090238.7928.15740276.199001.7486020.7886018.27870K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YPEL3 is not available on ENCORE database.





6 RBPs can affect the splicing of YPEL3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEYPEL3ENSG00000090238.7chr16-301064233010646730106109301062183010657230106755-0.089000.000180.00487excludedHepG2U2AF1
SEYPEL3ENSG00000090238.7chr16-3010570530105796301036343010412030106109301062010.085000.000020.00040includedK562AQR
SEYPEL3ENSG00000090238.7chr16-301064233010646730106109301062183010657230106656-0.268000.000480.02213excludedK562FXR1
SEYPEL3ENSG00000090238.7chr16-301064233010646730106109301062183010657230106656-0.097000.000100.00489excludedHepG2SF3A3
SEYPEL3ENSG00000090238.7chr16-301064233010646730106109301062183010657230106656-0.076000.000130.00887excludedHepG2PCBP1
A3SSYPEL3ENSG00000090238.7chr16-3010408130104174301040813010412030106109301062810.057000.001350.00911longerK562AQR
A3SSYPEL3ENSG00000090238.7chr16-3010610930106251301061093010621830106423301064670.187000.000030.00257longerK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for YPEL3 is not avaliable on ENCORE database.