VIM

General Information

Gene Name       : VIM
Gene ID             : ENSG00000026025.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VIM)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VIMENSG00000026025.15159.98147.55153.76ENCSR000AEF
HepG2VIMENSG00000026025.150.000.000.00ENCSR985KAT
K562VIMENSG00000026025.15347.49307.76327.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VIM is not avaliable on ENCORE database.



Proteins bound to RNA
  • VIM RNA is bound by 24 proteins.  







eCLIP assay for VIM is not avaliable on ENCORE database.





24 proteins are bound to VIM RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr101727940117279453+3'-UTR3.3573916.64751K562IGF2BP1
chr101727784417277864+3'-UTR,CDS,intron-Proximal3.5049912.27547K562YBX3
chr101727953817279550+3'-UTR3.9334313.50790K562TIA1
chr101727945317279507+3'-UTR4.1085612.33319K562IGF2BP1
chr101727933017279357+3'-UTR3.9389357.44335K562PABPC4
chr101727955017279562+3'-UTR4.2131617.63001K562TIA1
chr101727934117279401+3'-UTR3.6343418.14278K562IGF2BP1
chr101727684917276859+3'-UTR,CDS,intron-Proximal5.8197910.48996K562AQR
chr101727926217279292+3'-UTR,CDS3.056569.79830K562YBX3
chr101727684017276883+3'-UTR,CDS,intron-Proximal3.545393.20886K562PRPF8
chr101727952917279573+3'-UTR5.485549.76393HepG2SUB1
chr101727929617279448+3'-UTR3.215083.81565K562HLTF
chr101727956217279589+3'-UTR3.9937816.30235K562TIA1
chr101727930817279330+3'-UTR3.9696035.46908K562PABPC4
chr101727953417279581+3'-UTR4.5329115.91535K562IGF2BP1
chr101727932917279341+3'-UTR6.1493013.33323K562IGF2BP1
chr101727926417279309+3'-UTR,CDS4.404307.88838K562IGF2BP2
chr101727953517279572+3'-UTR3.054095.15794K562YBX3
chr101727951017279578+3'-UTR4.6153866.95059K562PABPC4
chr101727923917279262+3'-UTR,CDS3.0352810.32618K562YBX3
chr101727922817279329+3'-UTR,CDS,intron-Proximal4.2142610.63341K562IGF2BP1
chr101727198817272131+5'-UTR,intron-Distal,intron-Proximal3.9834010.43758K562AQR
chr101727127917271338+5'-UTR3.322075.84591K562IGF2BP2
chr101727127817271333+5'-UTR5.0940414.38737K562SERBP1
chr101727141617271500+5'-UTR,CDS3.1721340.63395K562YBX3
chr101727133017271478+5'-UTR,CDS3.0408116.73306K562SDAD1
chr101727208517272154+5'-UTR,intron-Distal5.109765.33214K562PRPF8
chr101727133617271414+5'-UTR3.1548825.70983K562YBX3
chr101727127717271343+5'-UTR3.250366.19719K562DDX3X
chr101727134417271409+5'-UTR5.1000214.02710K562SERBP1
chr101727243817272497+5'-UTR,intron-Distal3.796644.93376K562PRPF8
chr101727732217277331+CDS3.5817227.38470K562YBX3
chr101727167417271707+CDS3.6722513.33991K562YBX3
chr101727576617275810+CDS,intron-Proximal3.500956.37614K562GRWD1
chr101727584517275913+CDS3.9680421.42538HepG2SUB1
chr101727734617277361+CDS3.5257321.41371K562YBX3
chr101727577617275805+CDS3.423679.16552K562RBM15
chr101727266717272709+CDS3.103638.45632K562SND1
chr101727558417275594+CDS,intron-Proximal4.5111718.00121K562LIN28B
chr101727560517275684+CDS,intron-Proximal3.760733.02990K562SRSF7
chr101727669317276774+CDS3.2383310.18521K562ZNF800
chr101727170717271728+CDS3.7914312.10232K562YBX3
chr101727567317275682+CDS,intron-Proximal3.209074.86220K562GRWD1
chr101727726817277351+CDS3.5078215.84640HepG2SUB1
chr101727716717277215+CDS,intron-Proximal3.205798.04885K562RPS3
chr101727565917275681+CDS3.8895110.48861K562RBM15
chr101727558917275632+CDS3.640138.04449K562RPS3
chr101727719917277265+CDS3.3026714.99766K562YBX3
chr101727719517277349+CDS3.0637518.52689K562ZNF800
chr101727157417271677+CDS3.9577129.40093K562METAP2
chr101727736117277375+CDS4.0873122.37443K562YBX3
chr101727265417272671+CDS6.0143856.21759K562LIN28B
chr101727735417277389+CDS,intron-Proximal3.1175710.36887K562RPS3
chr101727721017277292+CDS3.8886415.19230K562PUM1
chr101727191217271982+CDS4.3874528.82420K562METAP2
chr101727576717275770+CDS,intron-Proximal3.778248.80601K562RBM15
chr101727264817272654+CDS,intron-Proximal4.9934725.42679K562LIN28B
chr101727591417275931+CDS,intron-Proximal3.047856.52812K562LIN28B
chr101727669117276819+CDS,intron-Proximal3.4261822.98072K562RPS3
chr101727566817275680+CDS3.394527.44661K562YBX3
chr101727733117277340+CDS3.1260324.18462K562YBX3
chr101727151917271566+CDS5.1148722.36903K562METAP2
chr101727267117272710+CDS,intron-Proximal5.8440259.92212K562LIN28B
chr101727559217275651+CDS3.557475.20401HepG2SUB1
chr101727670317276809+CDS3.8803121.59341K562PCBP1
chr101727737517277383+CDS4.5158220.14387K562YBX3
chr101727729217277374+CDS3.3944513.37045K562PUM1
chr101727174517271850+CDS3.3701035.98590K562METAP2
chr101727730317277322+CDS3.0641131.53411K562YBX3
chr101727558517275657+CDS,intron-Proximal3.3603117.88389K562SND1
chr101727169917271730+CDS4.0692912.43779K562METAP2
chr101727678817276808+CDS3.204005.55236K562SND1
chr101727738317277388+CDS4.243789.34382K562YBX3
chr101727151217271573+CDS3.7534719.84518K562YBX3
chr101727681017276849+CDS,intron-Proximal3.7504510.09391K562AQR
chr101727185017271912+CDS3.1646320.07465K562METAP2
chr101727592717275980+CDS,intron-Proximal3.316577.02925K562AQR
chr101727571217275760+intron-Proximal3.977593.02324K562XRN2
chr101727569517275761+intron-Proximal6.4320610.13695K562EFTUD2
chr101727571417275756+intron-Proximal4.837876.08021K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VIM is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VIM is not available on ENCORE database.

  • 112 RBPs can affect the levels of VIM.  








The Knockdown/knockout RNA-Seq assay for VIM is not available on ENCORE database.





112 RBPs can affect the gene expression of VIM :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VIMENSG00000026025.90.0000015.74190-99999.999994.554003.28750HepG2CCAR1
VIMENSG00000026025.90.5114016.59530-5.020204.252003.21710HepG2LARP4
VIMENSG00000026025.916.124900.0000099999.999904.871203.94710HepG2TARDBP
VIMENSG00000026025.98.609300.0000099999.999902.618902.03450HepG2UTP3
VIMENSG00000026025.96286.556903770.833800.7373015.5603012.88840K562AARS
VIMENSG00000026025.917265.413808897.663200.9563063.0322060.40760K562AGGF1
VIMENSG00000026025.95712.320007102.72900-0.314305.146703.04450K562AKAP1
VIMENSG00000026025.912305.430509777.718500.331603.855202.65430K562AKAP8
VIMENSG00000026025.911762.182409258.552700.345204.146003.34340K562AKAP8L
VIMENSG00000026025.93901.690708454.14140-1.1156029.8744028.14990K562AQR
VIMENSG00000026025.916119.737109714.697700.7305025.7002022.70090K562ATP5C1
VIMENSG00000026025.95821.857203696.295000.6553025.1795022.45520K562BCLAF1
VIMENSG00000026025.98653.877804902.639200.8197015.4457013.35050K562BOP1
VIMENSG00000026025.94078.977203109.390400.391503.756202.48960K562CCAR1
VIMENSG00000026025.921024.2865010632.770600.9834019.5170016.57520K562CCDC124
VIMENSG00000026025.912878.174007469.935100.7857016.1986013.58650K562CIRBP
VIMENSG00000026025.911928.439508756.902000.4458010.132608.02890K562CPEB4
VIMENSG00000026025.98942.766105212.813900.7786011.179509.58660K562CPSF6
VIMENSG00000026025.93704.617802804.190200.401607.073205.27070K562CSTF2
VIMENSG00000026025.99878.7913012481.84040-0.337405.699004.30130K562CELF1
VIMENSG00000026025.911925.593806462.796900.883705.580102.90610K562DAZAP1
VIMENSG00000026025.912754.4449010439.404700.288902.786201.31860K562DDX19B
VIMENSG00000026025.96624.005603276.574801.015404.136701.85410K562DDX1
VIMENSG00000026025.95824.697503512.013900.7298011.382208.12900K562DDX28
VIMENSG00000026025.913345.799007197.103300.8908025.8830022.86230K562DDX3X
VIMENSG00000026025.919881.834609059.686801.1338045.3784043.05130K562DDX47
VIMENSG00000026025.917980.345209962.045700.8518037.6137034.21610K562DKC1
VIMENSG00000026025.97638.330503343.659101.1917032.7343028.85750K562DNAJC21
VIMENSG00000026025.92168.828103402.67320-0.649806.435404.46730K562EEF2
VIMENSG00000026025.910975.061307905.710600.4732010.379607.98320K562EIF2S1
VIMENSG00000026025.922669.162705034.099302.17080219.18490215.69310K562EIF2S2
VIMENSG00000026025.96995.918003162.799901.1452013.2028011.03880K562EIF3A
VIMENSG00000026025.94593.992707519.31350-0.7109013.3915011.52480K562EIF4A3
VIMENSG00000026025.94202.402306771.66150-0.6883015.3640012.61070K562EIF4B
VIMENSG00000026025.97243.1667010150.01740-0.4868013.8133011.81110K562EIF4G2
VIMENSG00000026025.97145.255705175.893300.465103.433401.58400K562ESF1
VIMENSG00000026025.97422.474502926.737301.3425027.4959023.60480K562FAM120A
VIMENSG00000026025.97045.358304984.596400.499107.929205.10180K562FASTKD2
VIMENSG00000026025.95712.740503581.977700.673308.058605.98160K562FKBP4
VIMENSG00000026025.912457.892005304.104501.2318036.3773033.38020K562FMR1
VIMENSG00000026025.99854.931204495.789501.1322025.6989022.85870K562FTO
VIMENSG00000026025.96720.021104119.099300.7060017.9660014.56200K562FUS
VIMENSG00000026025.93907.323707819.78970-1.0009035.4808033.44460K562FXR1
VIMENSG00000026025.95513.217903295.949100.7421010.973508.15150K562GEMIN5
VIMENSG00000026025.94034.122606657.14130-0.7226021.6876019.05850K562GLRX3
VIMENSG00000026025.96563.641304976.875900.399204.965103.90410K562GPKOW
VIMENSG00000026025.910810.839107062.780500.614102.773301.55290K562HNRNPA2B1
VIMENSG00000026025.94383.914106216.92760-0.504008.173905.16800K562HNRNPH1
VIMENSG00000026025.99377.221606960.732800.429804.549702.93230K562HNRNPK
VIMENSG00000026025.97334.760004003.802800.8733014.2847011.74630K562HNRNPM
VIMENSG00000026025.96920.253005563.180400.314804.855103.65950K562HNRNPU
VIMENSG00000026025.918833.453906598.421801.5130056.0258053.30920K562HSPD1
VIMENSG00000026025.98920.358407090.089500.331203.421802.05670K562IGF2BP3
VIMENSG00000026025.92339.109503248.57040-0.473802.911501.37820K562ILF3
VIMENSG00000026025.96518.760904249.837200.617103.918002.79230K562KRR1
VIMENSG00000026025.95909.676703679.102000.6836013.7976010.34820K562LSM11
VIMENSG00000026025.916490.991009405.486800.8100020.4868016.93480K562MAK16
VIMENSG00000026025.94998.084807309.90390-0.548509.753707.91320K562MATR3
VIMENSG00000026025.910828.221304858.019401.1563039.0617035.97430K562METAP2
VIMENSG00000026025.94591.677506999.20000-0.6082010.798309.31240K562MTPAP
VIMENSG00000026025.911761.705307508.326600.6474016.2506013.54770K562NCBP2
VIMENSG00000026025.97874.6816011103.03240-0.495707.448004.99980K562NOL12
VIMENSG00000026025.94441.644703239.939300.455004.406302.66490K562NONO
VIMENSG00000026025.98624.695807776.268400.149302.082401.42460K562NSUN2
VIMENSG00000026025.912637.109906879.737500.877108.064505.95920K562PABPC1
VIMENSG00000026025.92600.769007515.25010-1.5309041.7090038.92560K562PCBP3
VIMENSG00000026025.94856.854603114.963400.640708.067205.03260K562PES1
VIMENSG00000026025.95010.613404028.476900.314703.397901.79400K562PHF6
VIMENSG00000026025.98547.796805504.865900.634708.475505.66000K562PKM
VIMENSG00000026025.91851.808905764.48130-1.6383078.8030075.55360K562POLR2G
VIMENSG00000026025.97413.221005525.896400.423804.933503.78780K562PPIG
VIMENSG00000026025.911472.182507342.499600.643702.806001.35460K562PPP1R8
VIMENSG00000026025.94551.612103199.104700.508606.189805.06750K562PRPF8
VIMENSG00000026025.97196.955703699.643800.9599027.0715023.82490K562PSIP1
VIMENSG00000026025.98387.543607116.803100.236902.349301.73020K562PTBP1
VIMENSG00000026025.915319.3621011780.692800.378805.899704.28800K562PUM1
VIMENSG00000026025.925437.6678011541.193301.1401041.2277038.10090K562PUM2
VIMENSG00000026025.925867.953809181.009201.4943036.1485034.12290K562PUS1
VIMENSG00000026025.910415.933508946.284800.219302.349701.79600K562RBM15
VIMENSG00000026025.98461.926103375.286701.3259046.5838043.22950K562RCC2
VIMENSG00000026025.910005.729707180.666000.478505.554203.92870K562NELFE
VIMENSG00000026025.97911.358306074.537700.381104.600902.29550K562RECQL
VIMENSG00000026025.93978.002604588.81420-0.206103.149501.45330K562RPS10
VIMENSG00000026025.95927.665803258.440600.8632012.8890011.10550K562RPS19
VIMENSG00000026025.94562.549706389.60180-0.485903.009601.35330K562RPS3A
VIMENSG00000026025.92256.778403270.72590-0.535304.197502.55500K562RRP9
VIMENSG00000026025.94899.072807602.00180-0.633907.363004.50110K562SAFB2
VIMENSG00000026025.92668.758605136.20350-0.9445024.3306021.75240K562SAFB
VIMENSG00000026025.93680.101605310.27800-0.529007.057304.76110K562SDAD1
VIMENSG00000026025.911456.288505648.246501.020205.378903.52620K562SF1
VIMENSG00000026025.913060.904307673.893400.7671023.1284020.98860K562SF3A3
VIMENSG00000026025.97940.347004733.471700.7462010.484608.51060K562SF3B1
VIMENSG00000026025.98579.929204773.135800.8459014.9722011.55940K562SLTM
VIMENSG00000026025.93927.381703199.698000.295502.788101.75920K562SRFBP1
VIMENSG00000026025.94057.585103194.799400.344803.156201.39660K562SRP68
VIMENSG00000026025.95174.112807862.13270-0.6036016.0448014.05480K562SRPK2
VIMENSG00000026025.95800.335006888.13180-0.248002.522201.52460K562SRSF4
VIMENSG00000026025.98674.836406589.679400.396504.423603.04310K562SRSF5
VIMENSG00000026025.94238.421306561.40630-0.6305011.221808.28310K562SRSF9
VIMENSG00000026025.93742.669205781.88600-0.6275013.8100011.97730K562SYNCRIP
VIMENSG00000026025.95118.861307060.82320-0.464005.396704.39160K562TARDBP
VIMENSG00000026025.94134.180502823.388000.550105.870403.47660K562TFIP11
VIMENSG00000026025.98128.673706811.057400.255002.807201.98290K562TIA1
VIMENSG00000026025.98880.832306603.654000.427307.672005.50660K562TROVE2
VIMENSG00000026025.99099.933105799.502200.649807.888905.88500K562U2AF1
VIMENSG00000026025.97895.395705990.480700.398206.214705.02050K562U2AF2
VIMENSG00000026025.916361.2588012487.206500.389704.118102.40040K562UBE2L3
VIMENSG00000026025.930113.312608245.379601.86860201.61190197.90310K562UPF1
VIMENSG00000026025.916841.214109309.531900.855106.260304.12800K562UTP18
VIMENSG00000026025.915877.417007180.894101.1446023.8480020.99380K562UTP3
VIMENSG00000026025.95613.036807337.05980-0.386403.538302.58910K562WDR43
VIMENSG00000026025.97654.9103010018.04310-0.388105.169303.40570K562WRN
VIMENSG00000026025.911537.801106601.902800.805304.128001.97230K562XPO5
VIMENSG00000026025.95127.769403338.249600.619108.313505.92230K562XRN2
VIMENSG00000026025.912142.038107634.221000.669402.992401.32980K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VIM is not available on ENCORE database.






No RBPs affect the alternative splcing events of VIM on ENCORE database.





The Knockdown/knockout RNA-Seq assay for VIM is not avaliable on ENCORE database.