SRRT

General Information

Gene Name       : SRRT
Gene ID             : ENSG00000087087.19
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SRRT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SRRTENSG00000087087.1943.5681.7162.63ENCSR000AEF
HepG2SRRTENSG00000087087.19140.8684.05112.46ENCSR985KAT
K562SRRTENSG00000087087.19104.8396.01100.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SRRTA304-551A1BGHcLV45-63, Experimented, ENCORE2BGKcLV44-63, Submitting, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SRRTK562CRISPRBGKcLV37-45,BGKcLV37-46BGKcLV37-1,BGKcLV37-2too many bands,NotSatisfiedENCORE2
SRRTK562CRISPRSRRT-BGKcLV44-63,SRRT-BGKcLV44-64NT-BGKcLV44-1,NT-BGKcLV44-262.8,63.9053SequencedENCORE2
SRRTK562CRISPRBGKcLV44-65,BGKcLV44-66BGKcLV44-1,BGKcLV44-2NotSatisfiedENCORE2
SRRTHepG2CRISPRBGHcLV36-43,BGHcLV36-44BGHcLV36-1,BGHcLV36-2too many bands ,NotSatisfiedENCORE2
SRRTHepG2CRISPRBGHcLV45-63,BGHcLV45-64BGHcLV45-1,BGHcLV45-293.9,91.2SequencingENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
SRRTProduct_ID: A304-551A
Lot_ID: 1
Source: Bethyl Labs
Target Name: SRRT-human		 SRRT-HEPG2-CRISPR-A304-551A.png<br>Caption: Western blot following CRISPR against SRRT in HepG2 whole cell lysate using SRRT specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against SRRT. SRRT protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 SRRT-K562-CRISPR-A304-551A.png<br>Caption: Western blot following CRISPR against SRRT in K562 whole cell lysate using SRRT specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against SRRT. SRRT protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for SRRT is not avaliable on ENCORE database.



Proteins bound to RNA
  • SRRT RNA is bound by 40 proteins.  







eCLIP assay for SRRT is not avaliable on ENCORE database.





40 proteins are bound to SRRT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7100481665100481755+3'-UTR,CDS,intron-Proximal4.0463023.36972HepG2U2AF2
chr7100486155100486264+3'-UTR,CDS4.695963.15159HepG2LARP4
chr7100483875100483890+3'-UTR,CDS3.331664.37238K562YBX3
chr7100478909100478932+3'-UTR,CDS3.098626.75486K562UCHL5
chr7100481725100481748+3'-UTR,CDS3.494287.72583K562GRWD1
chr7100479260100479316+3'-UTR,CDS,intron-Proximal3.874947.87103K562U2AF1
chr7100479218100479302+3'-UTR,CDS,intron-Proximal3.1399111.87371K562PRPF8
chr7100478908100478917+3'-UTR,CDS3.886369.72545K562ZNF622
chr7100483813100483886+3'-UTR,CDS,intron-Proximal4.5749520.42344K562SF3B4
chr7100486237100486275+3'-UTR,CDS4.218316.57313K562PABPC4
chr7100481791100481809+3'-UTR,CDS4.144369.74809K562ZNF622
chr7100479297100479325+3'-UTR,CDS3.796735.52031HepG2GRWD1
chr7100481801100481857+3'-UTR,CDS3.457365.56491HepG2BCLAF1
chr7100484417100484419+3'-UTR,CDS3.057413.39306HepG2GRWD1
chr7100479305100479351+3'-UTR,CDS3.323017.63733HepG2PPIG
chr7100481661100481758+3'-UTR,CDS,intron-Proximal3.2793611.17741K562U2AF1
chr7100481689100481747+3'-UTR,CDS,intron-Proximal4.009909.63482HepG2GRWD1
chr7100484019100484054+3'-UTR,CDS3.884236.45705K562MTPAP
chr7100481713100481725+3'-UTR,CDS3.707588.51327K562U2AF2
chr7100486169100486199+3'-UTR,CDS3.070914.68262K562RBM15
chr7100484376100484442+3'-UTR,CDS,intron-Proximal3.104654.24990K562SMNDC1
chr7100483869100483928+3'-UTR,CDS3.2965810.57726K562UCHL5
chr7100481836100481847+3'-UTR,CDS3.981178.84023K562ZNF622
chr7100479033100479041+3'-UTR,CDS,intron-Proximal4.0754418.90441K562AQR
chr7100479259100479302+3'-UTR,CDS,intron-Proximal3.932516.77200HepG2U2AF2
chr7100481711100481746+3'-UTR,CDS3.360959.42893K562UCHL5
chr7100478905100478982+3'-UTR,CDS,intron-Proximal3.5954110.12338HepG2PPIG
chr7100478885100478916+3'-UTR,CDS,intron-Proximal3.067528.01532K562AQR
chr7100478982100479022+3'-UTR,CDS3.298736.47139HepG2PPIG
chr7100478978100479027+3'-UTR,CDS3.487717.55038K562GRWD1
chr7100481832100481855+3'-UTR,CDS3.627125.86107HepG2PPIG
chr7100484035100484050+3'-UTR,CDS3.479385.10069HepG2GRWD1
chr7100479239100479298+3'-UTR,CDS,intron-Proximal5.1929826.58915K562AQR
chr7100484365100484440+3'-UTR,CDS,intron-Proximal3.8298211.83056K562SF3B4
chr7100481798100481855+3'-UTR,CDS5.4305310.83900HepG2GRWD1
chr7100481690100481713+3'-UTR,CDS,intron-Proximal4.4464916.34377K562U2AF2
chr7100486162100486251+3'-UTR,CDS3.176333.55010K562APOBEC3C
chr7100478948100479007+3'-UTR,CDS3.874216.29052K562SRSF1
chr7100483328100483396+5'-UTR,CDS,intron-Proximal3.7054412.16607K562EFTUD2
chr7100483542100483559+5'-UTR,CDS5.7427811.40157K562UCHL5
chr7100472923100472950+5'-UTR,intron-Proximal4.025647.70480K562YBX3
chr7100483489100483522+5'-UTR,CDS4.085057.92595K562SF3B4
chr7100483545100483629+5'-UTR,CDS,intron-Proximal3.075539.50048K562PRPF8
chr7100472845100472898+5'-UTR3.013275.71191HepG2GRWD1
chr7100472972100473021+5'-UTR,intron-Proximal5.1882713.23057K562AQR
chr7100479818100479865+5'-UTR,CDS,intron-Proximal3.140826.54912HepG2GRWD1
chr7100472740100472783+5'-UTR4.440497.97419K562DDX3X
chr7100483491100483525+5'-UTR,CDS3.840808.92446K562BUD13
chr7100473169100473214+5'-UTR,CDS,intron-Proximal3.561993.67894HepG2AQR
chr7100480567100480592+5'-UTR,intron-Distal3.152337.87286K562ZNF622
chr7100472735100472786+5'-UTR3.364584.02244HepG2NCBP2
chr7100473167100473217+5'-UTR,CDS,intron-Proximal3.7899213.29422K562AQR
chr7100483493100483530+5'-UTR,CDS4.4340913.40981K562UCHL5
chr7100483542100483555+5'-UTR,CDS4.177343.56019HepG2GRWD1
chr7100483555100483612+5'-UTR,CDS,intron-Proximal3.940997.47181HepG2PRPF8
chr7100472977100473043+5'-UTR,intron-Proximal3.590328.78144HepG2PRPF8
chr7100483483100483524+5'-UTR,CDS,intron-Proximal3.408918.16971K562EFTUD2
chr7100483544100483561+5'-UTR,CDS3.995614.41267HepG2PPIG
chr7100483561100483572+5'-UTR,CDS,intron-Proximal3.288439.60062K562AQR
chr7100483487100483518+5'-UTR,CDS3.539793.63681K562RBM15
chr7100483482100483530+5'-UTR,CDS,intron-Proximal3.718037.16637K562U2AF2
chr7100484895100484942+CDS,intron-Proximal4.5967212.20473K562SF3B4
chr7100484671100484722+CDS3.4474114.82681K562ZNF622
chr7100482398100482452+CDS5.629269.18880K562TRA2A
chr7100485116100485126+CDS3.158713.46619K562GRWD1
chr7100484707100484754+CDS3.5956215.62797K562UCHL5
chr7100482835100482858+CDS,intron-Proximal3.147443.77366HepG2PPIG
chr7100485074100485099+CDS3.491314.65365HepG2GRWD1
chr7100485414100485452+CDS3.267424.50748HepG2GRWD1
chr7100484725100484812+CDS4.134646.35686HepG2PABPN1
chr7100482544100482590+CDS3.072515.00014HepG2PRPF8
chr7100483321100483369+CDS,intron-Proximal4.100879.14494K562PUM1
chr7100484971100485012+CDS3.7500312.14621K562UCHL5
chr7100485052100485110+CDS4.2705116.16743K562ZNF622
chr7100479741100479795+CDS4.019965.99863K562GRWD1
chr7100479729100479797+CDS3.355419.22245HepG2GRWD1
chr7100482864100482973+CDS3.1657516.65177K562ZNF800
chr7100485642100485707+CDS,intron-Proximal5.0410134.07055K562AQR
chr7100484669100484694+CDS3.642925.74135K562DDX24
chr7100482099100482169+CDS3.643179.12906K562TRA2A
chr7100482838100482978+CDS5.4291442.74352K562UCHL5
chr7100484696100484751+CDS3.504168.67013K562DDX24
chr7100486035100486125+CDS,intron-Proximal3.730496.98063HepG2SF3A3
chr7100485666100485764+CDS,intron-Proximal3.924097.94000HepG2PABPN1
chr7100482376100482454+CDS3.1113413.16623K562GRWD1
chr7100484966100485011+CDS3.881335.28199HepG2GRWD1
chr7100482592100482645+CDS4.9090721.38144K562UCHL5
chr7100484669100484725+CDS4.748086.12579HepG2PABPN1
chr7100483332100483374+CDS3.215609.16855K562BUD13
chr7100473278100473332+CDS4.1461910.42618HepG2PPIG
chr7100485090100485115+CDS3.347416.00907HepG2PPIG
chr7100482026100482083+CDS4.3422117.94815K562UCHL5
chr7100482070100482174+CDS,intron-Proximal3.495386.30471HepG2G3BP1
chr7100473307100473331+CDS3.5683611.97898K562ZNF622
chr7100482808100482867+CDS,intron-Proximal3.079188.76543HepG2AQR
chr7100484974100485008+CDS3.001948.74985HepG2PPIG
chr7100484698100484751+CDS3.425317.04499HepG2GRWD1
chr7100482403100482457+CDS5.1107822.84851K562UCHL5
chr7100484958100485066+CDS5.144407.18438HepG2G3BP1
chr7100482632100482661+CDS3.435949.45398K562GRWD1
chr7100485348100485392+CDS3.954333.67607K562YBX3
chr7100482847100482860+CDS3.378834.01163K562RBM15
chr7100484722100484746+CDS3.759679.75908K562ZNF622
chr7100482833100482861+CDS,intron-Proximal3.672208.57308HepG2BUD13
chr7100479425100479434+CDS,intron-Proximal4.3489618.07594K562AQR
chr7100482929100482980+CDS3.019797.01051K562PUM1
chr7100484583100484635+CDS,intron-Proximal3.924278.47339HepG2PRPF8
chr7100479643100479678+CDS,intron-Proximal3.125615.34140HepG2PRPF8
chr7100482103100482127+CDS4.7162910.96138K562ZNF622
chr7100485324100485345+CDS3.319659.72918K562UCHL5
chr7100484644100484722+CDS,intron-Proximal3.3080917.42878K562EFTUD2
chr7100485323100485350+CDS,intron-Proximal4.5480411.38882K562BUD13
chr7100484976100485006+CDS3.531839.23212K562ZNF622
chr7100483351100483373+CDS3.258526.95218K562UCHL5
chr7100485406100485473+CDS5.051576.39410HepG2PABPN1
chr7100484726100484746+CDS3.297044.51003HepG2PPIG
chr7100482544100482582+CDS3.589079.81223K562PUM1
chr7100482563100482605+CDS3.980964.57186K562TRA2A
chr7100485078100485124+CDS4.0382215.49974K562UCHL5
chr7100479733100479785+CDS3.064969.44335HepG2PPIG
chr7100482834100482885+CDS,intron-Proximal4.069236.68607K562TRA2A
chr7100482405100482448+CDS3.200083.61570K562SRSF1
chr7100484671100484707+CDS4.8033118.09756K562UCHL5
chr7100482545100482579+CDS3.139377.24864K562GRWD1
chr7100482623100482662+CDS,intron-Proximal3.615585.40162K562TRA2A
chr7100482361100482403+CDS4.1549315.89279K562UCHL5
chr7100482874100482936+CDS4.7199122.88123K562ZNF622
chr7100479646100479677+CDS,intron-Proximal4.663765.90930HepG2AQR
chr7100482422100482450+CDS3.668017.39639K562ZNF622
chr7100482083100482172+CDS4.8267530.60281K562UCHL5
chr7100482804100482850+CDS,intron-Proximal3.2973413.22788K562AQR
chr7100484965100485022+CDS3.897605.83331K562SRSF1
chr7100485124100485133+CDS3.547499.66555K562UCHL5
chr7100479624100479681+CDS,intron-Proximal3.181689.11775K562SF3B4
chr7100482360100482376+CDS,intron-Proximal3.474613.85473K562GRWD1
chr7100485075100485135+CDS,intron-Proximal3.025935.93315K562DDX24
chr7100482645100482660+CDS6.0398617.03520K562UCHL5
chr7100482407100482456+CDS4.1332712.90893K562PUM1
chr7100482580100482620+CDS3.158904.38249K562RBM15
chr7100480097100480146+intron-Distal3.637897.09919K562RBM15
chr7100478392100478429+intron-Distal,intron-Proximal4.706368.52787K562AQR
chr7100480968100481038+intron-Distal5.4021278.90724K562PTBP1
chr7100481178100481248+intron-Distal4.477873.05187HepG2QKI
chr7100481045100481111+intron-Distal4.9172138.31390K562PTBP1
chr7100479049100479157+intron-Distal,intron-Proximal4.165546.54100K562PCBP1
chr7100479897100479995+intron-Distal,intron-Proximal3.884019.21389K562HNRNPK
chr7100480023100480087+intron-Distal3.259093.47356HepG2HNRNPK
chr7100477472100477555+intron-Distal3.087083.37821K562ILF3
chr7100481037100481109+intron-Distal4.2855511.33260K562MATR3
chr7100480901100481023+intron-Distal3.7691212.62753HepG2MATR3
chr7100476606100476632+intron-Distal3.991287.16876K562PTBP1
chr7100480756100480804+intron-Distal,intron-Proximal4.122309.12099HepG2PTBP1
chr7100476590100476606+intron-Distal4.382327.33269K562PTBP1
chr7100481047100481106+intron-Distal4.470735.61842HepG2MATR3
chr7100481129100481207+intron-Distal3.489897.04350HepG2PCBP2
chr7100476538100476583+intron-Distal4.142623.78533HepG2PTBP1
chr7100479967100479987+intron-Distal3.171313.34231K562RBM15
chr7100480745100480815+intron-Distal,intron-Proximal5.9232536.43795K562PTBP1
chr7100479165100479185+intron-Distal,intron-Proximal3.771908.10864K562PRPF8
chr7100479120100479186+intron-Distal,intron-Proximal4.6214110.46790HepG2PCBP2
chr7100480766100480895+intron-Distal,intron-Proximal4.6495112.23834K562MATR3
chr7100480898100480968+intron-Distal4.9378029.93397K562PTBP1
chr7100476587100476632+intron-Distal4.618495.84045HepG2PTBP1
chr7100481175100481239+intron-Distal4.638546.01663K562MATR3
chr7100481585100481655+intron-Distal,intron-Proximal3.9214713.07381K562SF3B4
chr7100480904100481035+intron-Distal5.6480952.17903HepG2PTBP1
chr7100483088100483141+intron-Distal,intron-Proximal3.834438.45500HepG2EFTUD2
chr7100480950100481031+intron-Distal3.249716.57140HepG2PCBP2
chr7100480027100480079+intron-Distal3.112445.88144K562DDX42
chr7100483104100483130+intron-Distal3.905488.24667K562BUD13
chr7100480815100480892+intron-Distal5.0424127.36062K562PTBP1
chr7100481046100481110+intron-Distal4.6079121.04861HepG2PTBP1
chr7100480767100480782+intron-Distal,intron-Proximal3.004594.95232K562PRPF8
chr7100483046100483130+intron-Distal,intron-Proximal5.4345917.49622K562EFTUD2
chr7100480804100480878+intron-Distal,intron-Proximal4.6735916.31752HepG2PTBP1
chr7100479966100480019+intron-Distal3.042163.89868HepG2RBFOX2
chr7100479885100479996+intron-Distal,intron-Proximal3.081293.98662HepG2HNRNPK
chr7100481148100481208+intron-Distal4.6650127.68842K562PTBP1
chr7100480895100481030+intron-Distal5.5512424.30675K562MATR3
chr7100481144100481212+intron-Distal4.6720716.65444HepG2PTBP1
chr7100480947100481025+intron-Distal4.115063.58835K562HNRNPK
chr7100481146100481235+intron-Distal4.461179.06568HepG2MATR3
chr7100480064100480111+intron-Distal4.392644.20763HepG2U2AF2
chr7100473406100473456+intron-Distal,intron-Proximal5.5896910.25778K562PRPF8
chr7100486023100486079+intron-Proximal4.081717.06426HepG2SF3B4
chr7100479048100479120+intron-Proximal3.586466.58258HepG2PCBP2
chr7100479036100479093+intron-Proximal3.946328.78209HepG2PRPF8
chr7100482512100482526+intron-Proximal3.723464.58287K562PRPF8
chr7100485492100485526+intron-Proximal3.868226.70109K562PRPF8
chr7100482491100482538+intron-Proximal3.6693314.06746K562EFTUD2
chr7100482811100482826+intron-Proximal4.144124.58287K562PRPF8
chr7100486042100486092+intron-Proximal5.9221911.43913K562SF3B4
chr7100481925100481983+intron-Proximal5.834119.95947K562SF3B4
chr7100482469100482537+intron-Proximal3.7473210.32093HepG2PRPF8
chr7100481935100481979+intron-Proximal3.798783.05889HepG2SF3B4
chr7100482309100482354+intron-Proximal5.9466412.80845K562SF3B4
chr7100485480100485486+intron-Proximal6.6007318.62356K562AQR
chr7100482481100482511+intron-Proximal4.671314.59919HepG2AQR
chr7100481678100481683+intron-Proximal4.5466717.39648K562U2AF2
chr7100479862100479912+intron-Proximal3.9535426.40338K562AQR
chr7100483586100483602+intron-Proximal4.6103612.08528K562AQR
chr7100479435100479508+intron-Proximal3.908207.47181HepG2PRPF8
chr7100483239100483281+intron-Proximal3.7931210.79618K562SF3B4
chr7100479647100479674+intron-Proximal3.108758.65113K562AQR
chr7100485188100485231+intron-Proximal5.229086.08021K562PRPF8
chr7100479434100479470+intron-Proximal5.5770729.24139K562AQR
chr7100479889100479948+intron-Proximal3.8157211.26755HepG2RBFOX2
chr7100473334100473376+intron-Proximal4.767368.52787K562AQR
chr7100482480100482543+intron-Proximal4.8522715.70758K562SF3B4
chr7100483224100483319+intron-Proximal4.4320616.29546K562EFTUD2
chr7100479079100479099+intron-Proximal5.1626313.40185K562AQR
chr7100485486100485553+intron-Proximal5.5042234.02354K562AQR
chr7100482480100482535+intron-Proximal5.3900410.32912HepG2SF3B4
chr7100482670100482707+intron-Proximal5.461417.23718K562AQR
chr7100479041100479079+intron-Proximal4.6571829.34311K562AQR
chr7100483577100483616+intron-Proximal3.966573.20376K562XRN2
chr7100479449100479513+intron-Proximal3.029877.83986K562SF3B4
chr7100479470100479497+intron-Proximal4.407909.78712K562AQR
chr7100479451100479512+intron-Proximal3.247415.43415K562RBFOX2
chr7100479212100479266+intron-Proximal4.532806.05374HepG2SF3B4
chr7100479884100479942+intron-Proximal3.047206.98670HepG2RBM22
chr7100484590100484644+intron-Proximal4.8658312.29009K562EFTUD2
chr7100485181100485263+intron-Proximal5.3917217.49622K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SRRT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SRRT is not available on ENCORE database.

  • 115 RBPs can affect the levels of SRRT.  








The Knockdown/knockout RNA-Seq assay for SRRT is not available on ENCORE database.





115 RBPs can affect the gene expression of SRRT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SRRTENSG00000087087.14719.830701135.19470-0.657207.661405.98470HepG2AATF
SRRTENSG00000087087.141416.972101760.05440-0.312804.550503.80740HepG2ACO1
SRRTENSG00000087087.141512.001901122.704800.429403.216702.14480HepG2ADAR
SRRTENSG00000087087.14903.963001247.38890-0.464603.230502.10960HepG2AKAP8
SRRTENSG00000087087.141515.939102251.95480-0.5710013.2720011.96610HepG2AUH
SRRTENSG00000087087.14906.209001453.26210-0.681405.459804.23740HepG2BCLAF1
SRRTENSG00000087087.141141.848001857.00060-0.7016012.2035010.77460HepG2CALR
SRRTENSG00000087087.141822.033502858.41620-0.649705.873604.42770HepG2CCAR1
SRRTENSG00000087087.141523.987501025.603800.571305.624604.54660HepG2CIRBP
SRRTENSG00000087087.141510.368201759.51240-0.220302.708102.04820HepG2CKAP4
SRRTENSG00000087087.141490.144902486.97780-0.7389011.191809.91250HepG2CPSF6
SRRTENSG00000087087.141449.057201151.359400.331703.686202.51070HepG2YBX3
SRRTENSG00000087087.14682.389701162.29150-0.768306.530504.16670HepG2CSTF2T
SRRTENSG00000087087.14896.660001225.63790-0.450904.660603.46450HepG2DDX24
SRRTENSG00000087087.14953.456901204.19670-0.336802.921501.52910HepG2DDX52
SRRTENSG00000087087.14980.799601644.75560-0.745806.136605.03950HepG2DDX55
SRRTENSG00000087087.141679.850902824.17000-0.749504.874603.59130HepG2DDX59
SRRTENSG00000087087.14680.284501073.83790-0.658605.461204.61880HepG2DDX6
SRRTENSG00000087087.14846.133101130.44090-0.417904.177003.32830HepG2DNAJC21
SRRTENSG00000087087.14731.356701153.34410-0.657205.352103.81780HepG2AGO1
SRRTENSG00000087087.141609.916601140.293600.497503.833603.08560HepG2EIF4A3
SRRTENSG00000087087.141700.972901110.541700.615004.504503.63750HepG2EIF4B
SRRTENSG00000087087.141633.749002061.93470-0.335802.577501.79010HepG2EIF4G2
SRRTENSG00000087087.142012.316702703.34380-0.425903.051602.24700HepG2FIP1L1
SRRTENSG00000087087.14885.664401368.87890-0.628204.754003.12510HepG2FKBP4
SRRTENSG00000087087.142063.728401150.993400.8423011.6594010.33640HepG2FXR1
SRRTENSG00000087087.141403.662301067.460000.394902.676002.02120HepG2G3BP1
SRRTENSG00000087087.141608.622501133.579000.504804.578203.42230HepG2G3BP2
SRRTENSG00000087087.141380.553101038.171100.411103.325602.33370HepG2GEMIN5
SRRTENSG00000087087.141718.990802818.98380-0.713608.651607.56190HepG2GPKOW
SRRTENSG00000087087.141259.260401680.25140-0.416106.821805.37250HepG2HDGF
SRRTENSG00000087087.141603.972701141.272500.490905.418904.55680HepG2HNRNPA1
SRRTENSG00000087087.141418.564102005.10180-0.499205.481904.24310HepG2HNRNPA2B1
SRRTENSG00000087087.142004.522202599.61820-0.375006.066805.05970HepG2HNRNPF
SRRTENSG00000087087.141642.104101081.495600.602406.806605.74800HepG2HNRNPK
SRRTENSG00000087087.141429.673102690.22620-0.9120015.5651014.23940HepG2HNRNPLL
SRRTENSG00000087087.142029.352002559.90110-0.335103.364402.57270HepG2IGF2BP1
SRRTENSG00000087087.141576.683901084.959000.539205.053004.16520HepG2IGF2BP2
SRRTENSG00000087087.141223.346601608.81120-0.395207.114205.53190HepG2KIF1C
SRRTENSG00000087087.141899.447101151.397400.722108.416907.28660HepG2MAGOH
SRRTENSG00000087087.142060.942401157.762700.831909.938708.80070HepG2MATR3
SRRTENSG00000087087.141749.872902188.19410-0.322502.862702.04050HepG2MSI2
SRRTENSG00000087087.141682.268502744.11650-0.705905.439704.05240HepG2MTPAP
SRRTENSG00000087087.141326.300801837.36680-0.470205.148903.50610HepG2NAA15
SRRTENSG00000087087.141944.967302385.54470-0.294602.380201.68440HepG2NSUN2
SRRTENSG00000087087.141546.196701077.616600.520809.492208.47690HepG2PCBP1
SRRTENSG00000087087.141251.430701673.70420-0.419503.618601.62490HepG2PES1
SRRTENSG00000087087.14797.129101268.20160-0.669906.838905.63290HepG2PRPF8
SRRTENSG00000087087.142611.303502192.311200.252204.547703.82760HepG2PUM1
SRRTENSG00000087087.141441.740301792.70630-0.314304.587003.83190HepG2PUS1
SRRTENSG00000087087.14742.759201187.51360-0.6770010.043508.95770HepG2QKI
SRRTENSG00000087087.14680.739601194.45690-0.811203.004002.27180HepG2RAVER1
SRRTENSG00000087087.141557.630902724.46580-0.8066015.1188013.37610HepG2RBM15
SRRTENSG00000087087.141958.855501220.326700.6826016.0555014.95710HepG2NELFE
SRRTENSG00000087087.141536.429201136.625100.434703.333602.66500HepG2RECQL
SRRTENSG00000087087.141269.816202800.13640-1.1409026.3254024.67660HepG2RPLP0
SRRTENSG00000087087.14878.30780626.222500.488002.788601.98610HepG2RPS3A
SRRTENSG00000087087.14849.600501254.45550-0.562204.241203.28980HepG2RRP9
SRRTENSG00000087087.145023.144502843.036600.821108.784807.52850HepG2SF3A3
SRRTENSG00000087087.141786.587701141.585600.646108.113807.18340HepG2SF3B4
SRRTENSG00000087087.141662.935501980.28410-0.252003.287402.53350HepG2SLBP
SRRTENSG00000087087.141790.802401309.606500.451408.444407.41730HepG2SMN1
SRRTENSG00000087087.141826.629802962.73690-0.697705.563004.44370HepG2SNRNP70
SRRTENSG00000087087.141803.853502440.86780-0.436309.074108.31060HepG2SRFBP1
SRRTENSG00000087087.142590.305601191.595701.1201048.6933047.24630HepG2SRSF1
SRRTENSG00000087087.141762.570102553.97210-0.5351011.5667010.31090HepG2SRSF7
SRRTENSG00000087087.14741.14770969.45020-0.387404.501303.82930HepG2SRSF9
SRRTENSG00000087087.141425.371601825.67120-0.357103.189702.18540HepG2SUPT6H
SRRTENSG00000087087.141042.094201637.15640-0.651705.864904.93740HepG2SUPV3L1
SRRTENSG00000087087.14772.006101071.12890-0.472405.457104.71500HepG2TAF15
SRRTENSG00000087087.141389.814402622.66590-0.9161014.7564013.29910HepG2TARDBP
SRRTENSG00000087087.142459.676601329.198300.887804.949203.55420HepG2TBRG4
SRRTENSG00000087087.14751.960801097.22350-0.545104.539503.30910HepG2TFIP11
SRRTENSG00000087087.14695.65970984.14060-0.500505.254204.11540HepG2TIA1
SRRTENSG00000087087.142861.034202312.696900.306902.619902.00790HepG2U2AF1
SRRTENSG00000087087.142176.218602521.33300-0.212402.699202.00790HepG2UPF1
SRRTENSG00000087087.142128.788501611.606200.401402.581201.87970HepG2XRN2
SRRTENSG00000087087.141910.483102772.99190-0.5375017.1884016.11600HepG2ZNF622
SRRTENSG00000087087.142504.680602070.201200.274802.424501.32570K562AARS
SRRTENSG00000087087.145301.473303665.096400.532408.835107.89600K562AGGF1
SRRTENSG00000087087.145448.383503813.730300.514507.580906.45180K562AKAP8L
SRRTENSG00000087087.146374.147304598.787300.470907.385105.25520K562APOBEC3C
SRRTENSG00000087087.146910.299304570.190500.596409.653108.66130K562AQR
SRRTENSG00000087087.147578.090504945.700900.6156021.3818019.73350K562DDX47
SRRTENSG00000087087.145118.147204103.650700.318602.638901.78720K562DKC1
SRRTENSG00000087087.142809.238501933.785600.538704.008302.43500K562EEF2
SRRTENSG00000087087.143368.603801868.113200.8505014.3486012.10930K562EFTUD2
SRRTENSG00000087087.143784.799601999.671200.920403.999602.72820K562EIF3D
SRRTENSG00000087087.142600.625501424.725900.8681023.9653021.60710K562EIF3G
SRRTENSG00000087087.142568.424802161.923500.248502.640801.52290K562EIF4B
SRRTENSG00000087087.142575.273102095.519800.297303.479802.00110K562EWSR1
SRRTENSG00000087087.143840.139002496.550300.6211016.5856015.21330K562FXR1
SRRTENSG00000087087.14468.739301223.97160-1.3847019.0737016.77410K562G3BP2
SRRTENSG00000087087.142724.959303278.55330-0.266802.241401.52580K562GPKOW
SRRTENSG00000087087.143466.043202594.384800.417805.607304.10030K562HNRNPA1
SRRTENSG00000087087.144739.405403197.102100.567805.987404.55200K562HNRNPM
SRRTENSG00000087087.143550.891302873.211400.305404.053002.96320K562HNRNPU
SRRTENSG00000087087.142547.843001868.910000.447003.435302.24730K562IGF2BP2
SRRTENSG00000087087.145604.495104047.211300.469607.712606.16570K562KIF1C
SRRTENSG00000087087.142728.822402193.431800.315002.927301.49380K562LARP7
SRRTENSG00000087087.142965.624002297.475800.368203.090101.53270K562LIN28B
SRRTENSG00000087087.142891.076001963.059500.558408.369006.87120K562MAGOH
SRRTENSG00000087087.142585.437201958.911100.400304.729503.48940K562MATR3
SRRTENSG00000087087.146458.726604533.914200.510408.700006.89830K562MBNL1
SRRTENSG00000087087.145057.102503177.955200.670106.793805.18520K562NAA15
SRRTENSG00000087087.142865.687402230.445300.361402.933601.45200K562NUSAP1
SRRTENSG00000087087.142872.382301746.437600.7177011.977009.86300K562PCBP2
SRRTENSG00000087087.142774.955202211.810500.327103.282601.70930K562PHF6
SRRTENSG00000087087.143421.810002883.448900.246902.400201.65610K562POLR2G
SRRTENSG00000087087.144098.573801817.902201.1727027.2040024.86090K562PRPF8
SRRTENSG00000087087.142829.908801907.316800.569106.887805.87580K562PTBP1
SRRTENSG00000087087.147236.615505686.429100.347703.996603.02030K562PUF60
SRRTENSG00000087087.148771.233203781.950501.2135034.1907032.24050K562PUS1
SRRTENSG00000087087.146175.344503685.126200.744708.812507.78120K562RBM15
SRRTENSG00000087087.143324.439601828.292900.8625011.846909.93450K562RBM22
SRRTENSG00000087087.142315.492501853.074000.321303.269102.19030K562RCC2
SRRTENSG00000087087.142832.235801851.366500.613306.086904.87000K562RPS19
SRRTENSG00000087087.143958.738502569.212200.6236010.967108.90820K562SAFB
SRRTENSG00000087087.142226.584901555.281500.517603.186601.49820K562SERBP1
SRRTENSG00000087087.145097.515404212.634800.275003.989503.01890K562SF3A3
SRRTENSG00000087087.142727.971501272.071501.1005016.7009014.45200K562SF3B4
SRRTENSG00000087087.14953.232501308.24100-0.456703.418201.61710K562SND1
SRRTENSG00000087087.146739.125904135.165000.704503.384101.97030K562SNRNP200
SRRTENSG00000087087.144965.226104315.934700.202103.455702.42430K562SRPK2
SRRTENSG00000087087.143410.165001869.928900.8668020.7885018.86490K562SRSF1
SRRTENSG00000087087.144005.211503282.065700.287203.225601.58490K562SRSF9
SRRTENSG00000087087.142260.654501759.458100.361502.444201.49400K562SUPV3L1
SRRTENSG00000087087.144801.588402892.169800.7313017.7229015.68240K562SYNCRIP
SRRTENSG00000087087.14743.750901201.41870-0.691803.718301.92980K562TAF15
SRRTENSG00000087087.143203.449301892.226100.7594011.8969010.25100K562TARDBP
SRRTENSG00000087087.142555.677501825.335100.485406.889005.50700K562TIA1
SRRTENSG00000087087.142516.088201791.821600.489702.418101.41090K562TRA2A
SRRTENSG00000087087.14968.643001224.80930-0.338503.201002.33870K562U2AF2
SRRTENSG00000087087.144025.490304526.75670-0.169302.286701.62990K562UPF1
SRRTENSG00000087087.143224.841703873.40340-0.264402.546501.70360K562WDR3
SRRTENSG00000087087.145553.224704027.885600.4632014.6516012.90460K562WDR43
SRRTENSG00000087087.143911.458505148.82300-0.396504.706203.53670K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SRRT is not available on ENCORE database.





23 RBPs can affect the splicing of SRRT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESRRTENSG00000087087.14chr7+100485898100486004100485662100485764100486094100486277-0.092000.007040.09899excludedK562SRSF1
SESRRTENSG00000087087.14chr7+1004803851004807111004797701004798621004816901004818600.331000.000660.01443includedHepG2U2AF1
SESRRTENSG00000087087.14chr7+100479279100479426100478905100479034100479673100479862-0.131000.001180.02369excludedHepG2U2AF1
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.174000.000760.06689includedHepG2PRPF8
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.175000.002200.05710includedK562AKAP8L
SESRRTENSG00000087087.14chr7+100485877100486004100485674100485764100486094100486285-0.085000.000110.01522excludedK562XRCC6
SESRRTENSG00000087087.14chr7+1004783161004783901004731931004733331004789051004790340.167000.000280.02948includedHepG2QKI
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.646000.000000.00000includedHepG2U2AF2
SESRRTENSG00000087087.14chr7+100479279100479426100478905100479034100479673100479862-0.332000.000000.00000excludedHepG2U2AF2
SESRRTENSG00000087087.14chr7+100480385100480711100479673100479862100481690100481860-0.166000.000010.00111excludedHepG2AKAP1
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.171000.000000.00000includedK562AQR
SESRRTENSG00000087087.14chr7+1004783161004783901004731931004733331004789051004790340.107000.000000.00001includedK562AQR
SESRRTENSG00000087087.14chr7+100485877100486004100485568100485764100486094100486285-0.070000.000020.00035excludedK562AQR
SESRRTENSG00000087087.14chr7+100480385100480711100479673100479862100481690100481860-0.187000.000000.00206excludedK562HNRNPA1
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.372000.000110.01209includedHepG2FTO
SESRRTENSG00000087087.14chr7+100485877100486004100485674100485764100486094100486285-0.096000.002100.04110excludedK562U2AF1
SESRRTENSG00000087087.14chr7+100480385100480711100479673100479862100481690100481860-0.091000.000030.00147excludedHepG2SRSF1
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.311000.000010.00049includedHepG2SF3A3
SESRRTENSG00000087087.14chr7+1004783161004783901004731931004733331004789051004790340.102000.000100.08009includedK562ZRANB2
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.111000.000090.03295includedHepG2NOL12
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.237000.001400.06013includedHepG2SF3B4
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.272000.000180.00477includedK562U2AF2
SESRRTENSG00000087087.14chr7+100478316100478390100473193100473333100478905100479034-0.054000.001680.05591excludedK562HNRNPU
SESRRTENSG00000087087.14chr7+100479279100479426100478905100479034100479673100479862-0.054000.002150.06735excludedK562HNRNPU
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.172000.001500.03717includedK562RBM15
SESRRTENSG00000087087.14chr7+100480385100480711100479673100479862100481690100481860-0.199000.000110.06640excludedK562AARS
SESRRTENSG00000087087.14chr7+1004803851004807111004796731004798621004816901004818600.207000.000520.09380includedHepG2FUS
SESRRTENSG00000087087.14chr7+1004783161004783901004731931004733331004789051004790340.054000.000050.07652includedK562CPEB4
A3SSSRRTENSG00000087087.14chr7+100485662100485764100485674100485764100485323100485480-0.304000.000000.00029shorterK562RBM22
A3SSSRRTENSG00000087087.14chr7+1004856621004857641004856741004857641004853231004854800.158000.000760.07740longerK562FXR1
A3SSSRRTENSG00000087087.14chr7+100485662100485764100485674100485764100485323100485480-0.238000.000170.02032shorterHepG2RBM22
A3SSSRRTENSG00000087087.14chr7+1004856381004857641004856741004857641004853231004854800.195000.000000.00000longerK562AQR
A3SSSRRTENSG00000087087.14chr7+1004827891004829911004828361004829911004825431004826610.075000.000000.00000longerK562AQR
A3SSSRRTENSG00000087087.14chr7+100485662100485764100485674100485764100485323100485480-0.200000.000000.00000shorterK562AQR
A3SSSRRTENSG00000087087.14chr7+100485662100485764100485674100485764100485323100485480-0.126000.000040.00268shorterK562PUS1
A5SSSRRTENSG00000087087.14chr7+1004783161004784841004783161004783901004789051004790340.301000.001900.03234longerK562AQR
A5SSSRRTENSG00000087087.14chr7+1004825431004827121004825431004826611004828361004829910.083000.000000.00000longerK562AQR
RISRRTENSG00000087087.14chr7+1004833211004835601004833211004833831004834831004835600.175000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SRRT is not avaliable on ENCORE database.