GFM1

General Information

Gene Name       : GFM1
Gene ID             : ENSG00000168827.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GFM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GFM1ENSG00000168827.1446.7437.6942.22ENCSR000AEF
HepG2GFM1ENSG00000168827.1418.7627.4423.10ENCSR985KAT
K562GFM1ENSG00000168827.1449.5143.5746.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GFM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GFM1 RNA is bound by 6 proteins.  







eCLIP assay for GFM1 is not avaliable on ENCORE database.





6 proteins are bound to GFM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3158410060158410167+3'-UTR4.683647.98240K562PUM2
chr3158410032158410095+3'-UTR5.301679.25844K562KHSRP
chr3158409901158409950+3'-UTR3.406164.56724K562KHSRP
chr3158409274158409332+3'-UTR4.130113.38968HepG2BCLAF1
chr3158409259158409369+3'-UTR6.1259211.71673HepG2SUB1
chr3158409950158410032+3'-UTR3.343187.44686K562KHSRP
chr3158410095158410181+3'-UTR4.334718.86302K562KHSRP
chr3158384089158384134+5'-UTR,CDS,intron-Proximal3.145963.55800HepG2BCLAF1
chr3158383208158383266+5'-UTR,CDS,intron-Proximal3.991345.65086HepG2BCLAF1
chr3158383137158383208+5'-UTR,CDS3.017573.17233HepG2BCLAF1
chr3158376726158376844+CDS4.204194.25741HepG2G3BP1
chr3158371203158371253+CDS3.630114.09885HepG2BCLAF1
chr3158376786158376849+CDS,intron-Proximal4.567344.34038HepG2BCLAF1
chr3158369882158369990+CDS,intron-Proximal3.734403.11149HepG2G3BP1
chr3158371098158371203+CDS,intron-Proximal3.741307.23562HepG2BCLAF1
chr3158378668158378743+CDS,intron-Proximal4.130113.02457HepG2BCLAF1
chr3158371188158371256+CDS4.258595.37961K562YBX3
chr3158376458158376614+intron-Distal,intron-Proximal3.683974.35650K562KHSRP
chr3158383266158383368+intron-Distal,intron-Proximal4.270074.14103K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GFM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GFM1 is not available on ENCORE database.

  • 130 RBPs can affect the levels of GFM1.  








The Knockdown/knockout RNA-Seq assay for GFM1 is not available on ENCORE database.





130 RBPs can affect the gene expression of GFM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GFM1ENSG00000168827.10454.80130634.77340-0.481003.296602.21520HepG2ADAR
GFM1ENSG00000168827.101182.15620876.571300.431402.710602.18390HepG2AKAP1
GFM1ENSG00000168827.10976.78070777.722000.328702.734301.97150HepG2AKAP8L
GFM1ENSG00000168827.10517.99170725.30360-0.485703.191102.34710HepG2ASCC1
GFM1ENSG00000168827.10972.51840747.256700.380002.930501.48670HepG2ATP5C1
GFM1ENSG00000168827.10597.55430885.03270-0.566703.448302.40420HepG2BCCIP
GFM1ENSG00000168827.101117.16050699.187500.676009.282607.99240HepG2CALR
GFM1ENSG00000168827.10916.01360689.083700.410602.811902.03260HepG2CIRBP
GFM1ENSG00000168827.10957.96850773.898300.307703.311402.59500HepG2CKAP4
GFM1ENSG00000168827.101005.73870544.148700.886106.516405.34210HepG2CNOT7
GFM1ENSG00000168827.10435.22850681.87930-0.647705.747104.19480HepG2CPSF7
GFM1ENSG00000168827.10892.862701063.13970-0.251802.764702.02300HepG2DAZAP1
GFM1ENSG00000168827.10818.14380651.856800.327702.627801.50070HepG2DDX1
GFM1ENSG00000168827.10958.45920604.812800.664107.206706.16420HepG2DDX21
GFM1ENSG00000168827.10807.78960591.614900.449203.697702.63080HepG2DDX24
GFM1ENSG00000168827.101346.42560839.720100.681106.936305.98780HepG2DDX3X
GFM1ENSG00000168827.10686.136701006.43560-0.552702.617301.66870HepG2DDX59
GFM1ENSG00000168827.10380.40080721.26360-0.923008.412707.38940HepG2DDX6
GFM1ENSG00000168827.10481.93650639.17960-0.407403.418802.64260HepG2DNAJC21
GFM1ENSG00000168827.10829.96150589.619600.493202.880501.94170HepG2EEF2
GFM1ENSG00000168827.10696.46830491.575300.502503.644802.36180HepG2EFTUD2
GFM1ENSG00000168827.10446.53010693.44100-0.635004.835404.06310HepG2EIF2S1
GFM1ENSG00000168827.10772.37440570.987300.435703.546802.34310HepG2EIF3G
GFM1ENSG00000168827.101433.379801048.717900.450706.204805.04080HepG2EIF4G1
GFM1ENSG00000168827.10614.348701004.62880-0.709508.176006.80880HepG2EIF4G2
GFM1ENSG00000168827.101242.71900756.411000.716205.952804.72620HepG2EWSR1
GFM1ENSG00000168827.10530.87120761.71650-0.520902.894201.75350HepG2FUS
GFM1ENSG00000168827.10706.041301189.15120-0.7521014.6830013.20220HepG2HNRNPF
GFM1ENSG00000168827.10553.80810968.48630-0.8063017.6572016.09100HepG2HNRNPL
GFM1ENSG00000168827.10545.75330958.76020-0.812908.883907.82630HepG2HNRNPLL
GFM1ENSG00000168827.10795.601001170.98190-0.557606.642805.56440HepG2IGF2BP1
GFM1ENSG00000168827.10999.28270773.397100.369602.305001.70490HepG2MAGOH
GFM1ENSG00000168827.101653.48420777.743001.0880015.2838013.89300HepG2MATR3
GFM1ENSG00000168827.10847.58930676.686900.324802.393501.63790HepG2MSI2
GFM1ENSG00000168827.101165.42960796.077300.549804.491503.69350HepG2NCBP2
GFM1ENSG00000168827.10882.014101054.19880-0.257302.168001.49130HepG2NOL12
GFM1ENSG00000168827.10260.73040497.17290-0.931202.858701.95470HepG2PABPC1
GFM1ENSG00000168827.10869.22630705.781000.300402.618501.79140HepG2PARN
GFM1ENSG00000168827.10504.91370635.97350-0.332902.465401.76550HepG2PPIL4
GFM1ENSG00000168827.101136.83450758.068800.584503.510302.14810HepG2PRPF6
GFM1ENSG00000168827.101332.54340671.432200.9888014.2282012.60060HepG2PRPF8
GFM1ENSG00000168827.10984.10990688.971400.514306.902306.11580HepG2PTBP1
GFM1ENSG00000168827.10952.55830746.180400.352202.951202.30970HepG2QKI
GFM1ENSG00000168827.101094.69160695.931900.653403.534402.74040HepG2RAVER1
GFM1ENSG00000168827.102023.901701238.738300.7082015.9596014.92310HepG2RBM22
GFM1ENSG00000168827.10853.15120677.203900.333102.336401.71140HepG2RBM25
GFM1ENSG00000168827.101053.89550766.761800.458804.577403.91350HepG2NELFE
GFM1ENSG00000168827.10886.26480714.129200.311502.700702.09060HepG2RECQL
GFM1ENSG00000168827.10939.353101280.89480-0.447403.916203.12700HepG2RPLP0
GFM1ENSG00000168827.10627.10970465.739300.429103.060202.41810HepG2RPS19
GFM1ENSG00000168827.10981.76490790.781500.312002.174901.46020HepG2RPS2
GFM1ENSG00000168827.10860.33060664.204400.373202.318401.59190HepG2RRP9
GFM1ENSG00000168827.10297.98100514.03600-0.786602.624901.34720HepG2SART3
GFM1ENSG00000168827.10630.46870467.475600.431402.684501.76140HepG2SERBP1
GFM1ENSG00000168827.101548.85380854.872100.857308.391707.16650HepG2SF3A3
GFM1ENSG00000168827.10977.38610717.314300.446205.195504.42840HepG2SF3B4
GFM1ENSG00000168827.10808.89800964.76280-0.254202.605301.92210HepG2SLBP
GFM1ENSG00000168827.10937.12200740.501300.339603.351302.65470HepG2SMN1
GFM1ENSG00000168827.101114.012701399.11760-0.328803.951003.38340HepG2SRFBP1
GFM1ENSG00000168827.101832.33900748.718301.2911049.1313047.68020HepG2SRSF1
GFM1ENSG00000168827.101293.67640993.495600.380804.533803.76610HepG2SRSF5
GFM1ENSG00000168827.10869.120801168.27580-0.426805.413004.49350HepG2SRSF7
GFM1ENSG00000168827.10890.51670692.832900.362002.951702.43810HepG2TIAL1
GFM1ENSG00000168827.10573.62380699.04590-0.285302.282401.76030HepG2TRIM56
GFM1ENSG00000168827.10972.62850715.148100.443503.459702.76230HepG2U2AF1
GFM1ENSG00000168827.10343.20230511.76610-0.576403.619402.75340HepG2UCHL5
GFM1ENSG00000168827.10438.95100793.37860-0.853905.596404.13030HepG2UPF2
GFM1ENSG00000168827.101151.98040731.956600.6542011.5419010.45180HepG2UTP3
GFM1ENSG00000168827.101100.36080765.284900.523803.142002.00910HepG2XRCC6
GFM1ENSG00000168827.10475.30630852.73870-0.843207.887006.67400HepG2XRN2
GFM1ENSG00000168827.10334.86860616.13140-0.8796013.6264012.32340HepG2ZC3H8
GFM1ENSG00000168827.101383.25040833.810600.7302018.5634017.45860HepG2ZNF622
GFM1ENSG00000168827.102212.814301493.071900.567507.836705.80990K562AARS
GFM1ENSG00000168827.102728.804903613.41230-0.405102.848201.60360K562ABCF1
GFM1ENSG00000168827.10997.504501436.25190-0.525908.883807.94280K562AGGF1
GFM1ENSG00000168827.101961.895401494.467600.392503.725502.96470K562AKAP8L
GFM1ENSG00000168827.104531.899703470.087700.385003.925402.40810K562APOBEC3C
GFM1ENSG00000168827.101678.023303559.40990-1.0849010.114109.10020K562AQR
GFM1ENSG00000168827.101557.051501970.75360-0.339904.408502.69530K562BCCIP
GFM1ENSG00000168827.101409.578501904.50070-0.434107.820806.17660K562BCLAF1
GFM1ENSG00000168827.101049.839901662.98780-0.663607.938006.42800K562BOP1
GFM1ENSG00000168827.101835.553902516.71480-0.455302.898901.44170K562BUD13
GFM1ENSG00000168827.10631.97040850.24260-0.428002.487701.49900K562CCAR1
GFM1ENSG00000168827.101784.020702536.21490-0.507502.607401.58240K562CNOT7
GFM1ENSG00000168827.102068.389402823.12420-0.448807.928106.02850K562CPEB4
GFM1ENSG00000168827.101053.079601768.20400-0.7477013.1694011.44840K562CPSF6
GFM1ENSG00000168827.101015.542301444.84770-0.508707.114805.30510K562CSTF2
GFM1ENSG00000168827.104749.313002921.446500.7009013.6108012.27560K562DDX47
GFM1ENSG00000168827.102014.774101608.264600.325003.929502.86210K562DKC1
GFM1ENSG00000168827.10925.983201325.04410-0.517008.278206.16890K562EIF2S1
GFM1ENSG00000168827.101809.599403093.39590-0.773505.111204.17630K562EIF2S2
GFM1ENSG00000168827.102426.625001563.096800.634405.046003.98560K562EIF3G
GFM1ENSG00000168827.10831.110701260.32390-0.600707.014405.71320K562EIF4A3
GFM1ENSG00000168827.10883.985501134.98270-0.360603.633702.27770K562EIF4B
GFM1ENSG00000168827.10986.184401320.13200-0.420802.850901.56440K562EXOSC5
GFM1ENSG00000168827.101772.924702597.16430-0.550804.819203.67660K562FIP1L1
GFM1ENSG00000168827.101173.194201799.16210-0.616907.664406.19770K562FMR1
GFM1ENSG00000168827.10928.195201524.97660-0.716308.377806.69600K562FTO
GFM1ENSG00000168827.10967.560801381.91060-0.514206.355704.22270K562FUS
GFM1ENSG00000168827.102742.564401310.682501.0651038.7080036.59740K562FXR1
GFM1ENSG00000168827.101765.185702089.47600-0.243302.446501.37950K562GLRX3
GFM1ENSG00000168827.101032.593901688.17630-0.7092010.377608.82200K562GPKOW
GFM1ENSG00000168827.102270.551104122.83770-0.860605.193104.15370K562GRSF1
GFM1ENSG00000168827.10959.757901634.47280-0.768106.058505.20860K562HNRNPC
GFM1ENSG00000168827.101025.058101459.25490-0.509503.462702.17660K562HNRNPF
GFM1ENSG00000168827.102139.468401645.958600.378202.991201.70610K562HNRNPK
GFM1ENSG00000168827.102021.243802640.13670-0.385404.313602.96370K562HNRNPL
GFM1ENSG00000168827.102339.733903521.41790-0.589805.158704.08830K562HSPD1
GFM1ENSG00000168827.101332.713801675.92030-0.330602.778401.58680K562IGF2BP3
GFM1ENSG00000168827.102018.894701586.065400.348002.285701.54440K562KIF1C
GFM1ENSG00000168827.10903.124701441.55320-0.674605.498204.12580K562KRR1
GFM1ENSG00000168827.102147.014501728.422400.312803.023902.05710K562MATR3
GFM1ENSG00000168827.101071.597101647.85830-0.620808.314106.74520K562METAP2
GFM1ENSG00000168827.101518.777104191.79520-1.4647044.5328040.99510K562MSI2
GFM1ENSG00000168827.101413.421302196.80110-0.6362016.6419014.88580K562MTPAP
GFM1ENSG00000168827.10988.187901258.51960-0.348903.220501.88740K562NCBP2
GFM1ENSG00000168827.101456.934902440.90200-0.7445031.0558029.00960K562NSUN2
GFM1ENSG00000168827.101104.212501608.78540-0.543003.875702.06900K562NUSAP1
GFM1ENSG00000168827.101290.125201679.20690-0.380302.781101.94770K562PCBP3
GFM1ENSG00000168827.101125.353901595.49810-0.503603.101301.57980K562PHF6
GFM1ENSG00000168827.101701.721302259.70820-0.409103.264101.55890K562PKM
GFM1ENSG00000168827.102042.840802948.07460-0.529204.342403.28370K562PPIG
GFM1ENSG00000168827.102685.200501596.221900.7503010.624409.14270K562PRPF8
GFM1ENSG00000168827.10783.125801465.38390-0.904005.885304.48730K562PSIP1
GFM1ENSG00000168827.102993.087001682.598600.8308018.7974017.14750K562PTBP1
GFM1ENSG00000168827.103137.613904471.75610-0.5112011.044909.11540K562PUM2
GFM1ENSG00000168827.102222.099001482.227800.584106.565605.77010K562PUS1
GFM1ENSG00000168827.101809.084801444.103300.325003.502902.84880K562RBM15
GFM1ENSG00000168827.10955.081601336.52880-0.484802.997601.96360K562RCC2
GFM1ENSG00000168827.101075.134602418.79500-1.169807.247303.73940K562SART3
GFM1ENSG00000168827.101638.536802408.46000-0.5557011.506209.93490K562SF3A3
GFM1ENSG00000168827.101195.892001605.60060-0.425003.116202.08220K562SF3B1
GFM1ENSG00000168827.10758.408101267.03950-0.740405.454903.87120K562SRFBP1
GFM1ENSG00000168827.102022.210901649.464500.293802.730602.02770K562SRSF1
GFM1ENSG00000168827.10658.93280894.74810-0.441403.632202.40320K562SRSF4
GFM1ENSG00000168827.101220.370001557.68830-0.352102.873201.80070K562SRSF5
GFM1ENSG00000168827.101293.353501638.92260-0.341604.111402.66270K562SRSF7
GFM1ENSG00000168827.101303.037801612.36150-0.307303.301301.88100K562SSB
GFM1ENSG00000168827.102303.133903117.08200-0.436603.307001.90850K562STAU1
GFM1ENSG00000168827.102529.172203743.77720-0.5658010.497607.90580K562SUCLG1
GFM1ENSG00000168827.10909.567201546.07160-0.765403.277902.16570K562SUPV3L1
GFM1ENSG00000168827.102117.652101291.890100.7129013.7105011.88400K562SYNCRIP
GFM1ENSG00000168827.101146.673901669.45860-0.541905.682304.64730K562TARDBP
GFM1ENSG00000168827.101295.349001610.35700-0.314002.832302.00310K562TIA1
GFM1ENSG00000168827.10787.538701409.50810-0.839806.067004.62700K562TIAL1
GFM1ENSG00000168827.10847.534401496.92440-0.820707.227705.54140K562TRIM56
GFM1ENSG00000168827.102044.699003038.99300-0.571704.618502.69840K562TRIP6
GFM1ENSG00000168827.101804.424802603.14550-0.528706.851904.81590K562TROVE2
GFM1ENSG00000168827.10938.366701636.03430-0.802004.397203.08310K562UCHL5
GFM1ENSG00000168827.101581.103702588.13550-0.7110022.3569020.55990K562UPF1
GFM1ENSG00000168827.101459.480302214.59340-0.601609.392607.73770K562WDR3
GFM1ENSG00000168827.102768.993702302.868100.265804.239103.20710K562WDR43
GFM1ENSG00000168827.102050.382401289.686800.668803.562901.70440K562XRCC6
GFM1ENSG00000168827.101064.308201665.47950-0.646003.527202.10140K562XRN2
GFM1ENSG00000168827.102469.008104010.34960-0.699804.542003.39400K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GFM1 is not available on ENCORE database.





10 RBPs can affect the splicing of GFM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGFM1ENSG00000168827.10chr3+1583677931583678501583668291583669461583698841583700350.092000.000470.01743includedK562AKAP8L
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.188000.000900.02891excludedK562AKAP8L
SEGFM1ENSG00000168827.10chr3+1583677931583678501583667871583669461583698841583700350.075000.003280.03290includedK562AQR
SEGFM1ENSG00000168827.10chr3+158402312158402457158384033158384175158407951158408112-0.109000.000000.00002excludedK562AQR
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.206000.000120.00291excludedK562PUS1
SEGFM1ENSG00000168827.10chr3+1583677931583678501583668291583669461583698841583700350.075000.000180.05404includedK562PPIL4
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.243000.000010.00087excludedK562UTP18
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.155000.000000.00030excludedK562HNRNPU
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.165000.001850.04352excludedK562RBM15
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.272000.000010.00073excludedK562AGGF1
SEGFM1ENSG00000168827.10chr3+1583677931583678501583668291583669461583698841583700350.098000.000490.06930includedK562ZC3H8
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.077000.000050.01264excludedK562ZC3H8
SEGFM1ENSG00000168827.10chr3+158366829158366946158364531158364736158369884158370039-0.159000.000050.07631excludedK562DDX3X
A3SSGFM1ENSG00000168827.10chr3+1583698611583700391583698841583700391583668291583669460.066000.000140.00119longerK562AQR
A3SSGFM1ENSG00000168827.10chr3+1583644921583647361583645311583647361583639531583640860.067000.000010.00013longerK562AQR
MXEGFM1ENSG00000168827.10chr3+1583723121583724201583766161583768481583711021583712561583786621583787640.080000.000000.000071includedK562AQR
MXEGFM1ENSG00000168827.10chr3+1583723121583724201583767451583768481583711021583712561583786621583787640.080000.000000.000071includedK562AQR
MXEGFM1ENSG00000168827.10chr3+1583722871583724201583766161583768481583711021583712561583786621583787640.052000.001910.016021includedK562AQR
MXEGFM1ENSG00000168827.10chr3+1583722871583724201583767451583768481583711021583712561583786621583787640.052000.001910.016021includedK562AQR
MXEGFM1ENSG00000168827.10chr3+1583840921583841751583997831583999461583804161583804731584023121584024570.055000.000960.008811includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GFM1 is not avaliable on ENCORE database.