COPA

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COPA	ENSG00000122218.15	116.25	96.82	106.53	ENCSR000AEF
HepG2	COPA	ENSG00000122218.15	74.89	90.83	82.86	ENCSR985KAT
K562	COPA	ENSG00000122218.15	86.15	103.69	94.92	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COPA is not avaliable on ENCORE database.

Proteins bound to RNA

COPA RNA is bound by 52 proteins.

eCLIP assay for COPA is not avaliable on ENCORE database.

52 proteins are bound to COPA RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	160259751	160259810	-	3'-UTR,intron-Distal	5.60134	27.34254	K562	IGF2BP1
chr1	160259694	160259743	-	3'-UTR,intron-Distal	3.91872	13.56650	HepG2	SUB1
chr1	160259822	160259885	-	3'-UTR,intron-Distal	4.33725	4.43609	HepG2	IGF2BP3
chr1	160259710	160259767	-	3'-UTR,intron-Distal	4.74616	5.24403	K562	IGF2BP2
chr1	160259159	160259194	-	3'-UTR,intron-Distal	3.92629	13.06787	K562	IGF2BP1
chr1	160259099	160259165	-	3'-UTR,intron-Distal	3.28144	4.41699	K562	ZC3H11A
chr1	160259895	160259954	-	3'-UTR,CDS,intron-Distal	3.72181	3.45995	K562	IGF2BP2
chr1	160259117	160259195	-	3'-UTR,intron-Distal	4.53641	10.93102	K562	NOLC1
chr1	160259521	160259545	-	3'-UTR,intron-Distal	3.49896	5.82813	K562	PABPC4
chr1	160259225	160259293	-	3'-UTR,intron-Distal	4.78635	4.29122	K562	IGF2BP2
chr1	160259301	160259346	-	3'-UTR,intron-Distal	3.90863	6.31999	HepG2	PCBP2
chr1	160259211	160259246	-	3'-UTR,intron-Distal	4.78478	13.06562	K562	IGF2BP1
chr1	160259656	160259692	-	3'-UTR,intron-Distal	4.05048	12.14680	K562	PABPC4
chr1	160259816	160259895	-	3'-UTR,intron-Distal	3.66120	9.94154	K562	IGF2BP2
chr1	160259104	160259170	-	3'-UTR,intron-Distal	5.19467	23.51569	HepG2	SUB1
chr1	160259810	160259890	-	3'-UTR,intron-Distal	3.61883	15.40377	K562	IGF2BP1
chr1	160259277	160259311	-	3'-UTR,intron-Distal	3.62335	15.63903	K562	YBX3
chr1	160259164	160259209	-	3'-UTR,intron-Distal	4.38886	4.77733	K562	IGF2BP2
chr1	160259300	160259376	-	3'-UTR,intron-Distal	3.12893	7.73000	K562	NOLC1
chr1	160259911	160259950	-	3'-UTR,intron-Distal	3.68899	9.63399	HepG2	SUB1
chr1	160259301	160259369	-	3'-UTR,intron-Distal	5.63597	22.54827	HepG2	SUB1
chr1	160259073	160259158	-	3'-UTR,intron-Distal	3.40477	7.99752	HepG2	ZC3H11A
chr1	160259767	160259805	-	3'-UTR,intron-Distal	3.40713	4.32261	K562	IGF2BP2
chr1	160259311	160259343	-	3'-UTR,intron-Distal	3.78973	5.73713	K562	IGF2BP1
chr1	160259701	160259811	-	3'-UTR,intron-Distal	3.60009	12.33953	K562	TIA1
chr1	160259680	160259705	-	3'-UTR,intron-Distal	3.36713	5.16808	K562	IGF2BP1
chr1	160259194	160259211	-	3'-UTR,intron-Distal	4.10661	15.80280	K562	IGF2BP1
chr1	160259705	160259751	-	3'-UTR,intron-Distal	4.87968	14.84227	K562	IGF2BP1
chr1	160312979	160313040	-	5'-UTR,intron-Distal,intron-Proximal	3.39237	7.27607	K562	FMR1
chr1	160312979	160313050	-	5'-UTR,intron-Distal,intron-Proximal	3.23896	5.11648	K562	DDX3X
chr1	160275339	160275356	-	CDS,intron-Distal	3.01979	7.61222	K562	YBX3
chr1	160268686	160268751	-	CDS,intron-Distal	3.93903	12.45189	HepG2	G3BP1
chr1	160264560	160264602	-	CDS,intron-Distal,intron-Proximal	3.15539	3.68653	K562	FMR1
chr1	160264632	160264646	-	CDS,intron-Distal	4.77002	23.66679	K562	AQR
chr1	160262309	160262332	-	CDS,intron-Distal	4.47429	8.59814	K562	DDX24
chr1	160276957	160276980	-	CDS,intron-Distal	3.12454	5.21025	HepG2	PPIG
chr1	160264215	160264296	-	CDS,intron-Distal,intron-Proximal	3.26962	8.20183	HepG2	EFTUD2
chr1	160263183	160263252	-	CDS,intron-Distal	4.78118	40.62104	K562	RPS3
chr1	160281698	160281720	-	CDS,intron-Distal	3.82008	15.36469	K562	YBX3
chr1	160265850	160265898	-	CDS,intron-Distal,intron-Proximal	4.20053	25.05302	K562	DDX24
chr1	160275512	160275552	-	CDS,intron-Distal	3.75412	13.11799	K562	DDX24
chr1	160276266	160276282	-	CDS,intron-Distal	4.30063	7.76216	HepG2	G3BP1
chr1	160267132	160267142	-	CDS,intron-Distal,intron-Proximal	3.72825	5.59922	K562	FMR1
chr1	160283914	160283959	-	CDS,intron-Distal,intron-Proximal	4.50150	8.05832	K562	SF3B4
chr1	160276143	160276165	-	CDS,intron-Distal,intron-Proximal	3.52875	5.13799	K562	SND1
chr1	160265853	160265864	-	CDS,intron-Distal	4.23440	4.97737	HepG2	G3BP1
chr1	160295331	160295347	-	CDS,intron-Distal,intron-Proximal	3.02799	17.54341	HepG2	BCLAF1
chr1	160262277	160262283	-	CDS,intron-Distal	3.51092	6.56666	K562	YBX3
chr1	160276143	160276160	-	CDS,intron-Distal,intron-Proximal	3.61208	5.34307	K562	FMR1
chr1	160276202	160276219	-	CDS,intron-Distal	3.60256	17.08445	K562	YBX3
chr1	160264609	160264646	-	CDS,intron-Distal	4.50760	19.37300	K562	DDX24
chr1	160264561	160264609	-	CDS,intron-Distal,intron-Proximal	4.21893	18.01030	K562	DDX24
chr1	160268977	160268991	-	CDS,intron-Distal	4.28195	5.73936	K562	FMR1
chr1	160260465	160260471	-	CDS,intron-Distal	3.67265	5.03105	K562	BUD13
chr1	160267132	160267200	-	CDS,intron-Distal,intron-Proximal	3.08309	11.33086	HepG2	G3BP1
chr1	160260005	160260018	-	CDS,intron-Distal	3.00653	6.26762	K562	U2AF2
chr1	160263175	160263185	-	CDS,intron-Distal,intron-Proximal	3.65078	6.27819	HepG2	PPIG
chr1	160282922	160282958	-	CDS,intron-Distal,intron-Proximal	4.30339	9.21141	K562	FXR2
chr1	160261124	160261183	-	CDS,intron-Distal,intron-Proximal	3.76226	4.57273	K562	IGF2BP2
chr1	160267501	160267535	-	CDS,intron-Distal	3.29527	8.04543	HepG2	G3BP1
chr1	160264271	160264314	-	CDS,intron-Distal,intron-Proximal	3.38726	13.12587	HepG2	PPIG
chr1	160276219	160276240	-	CDS,intron-Distal	3.14564	7.73042	K562	YBX3
chr1	160268974	160268979	-	CDS,intron-Distal	6.43074	53.00582	K562	LIN28B
chr1	160268681	160268741	-	CDS,intron-Distal	4.06865	4.62225	K562	FXR1
chr1	160283779	160283792	-	CDS,intron-Distal,intron-Proximal	3.80351	7.13039	K562	FMR1
chr1	160269051	160269054	-	CDS,intron-Distal	3.08957	8.65359	K562	YBX3
chr1	160259972	160260058	-	CDS,intron-Distal	4.50461	21.45630	K562	SF3B4
chr1	160278890	160278898	-	CDS,intron-Distal,intron-Proximal	4.08063	4.49000	K562	FXR2
chr1	160263190	160263248	-	CDS,intron-Distal	3.67092	7.01336	K562	FXR2
chr1	160275222	160275248	-	CDS,intron-Distal,intron-Proximal	4.38692	17.65003	K562	YBX3
chr1	160295332	160295371	-	CDS,intron-Distal,intron-Proximal	4.58320	9.90594	HepG2	G3BP1
chr1	160269008	160269013	-	CDS,intron-Distal	3.02930	16.93141	K562	YBX3
chr1	160309705	160309747	-	CDS,intron-Distal	4.43137	13.17475	K562	LIN28B
chr1	160267440	160267495	-	CDS,intron-Distal	4.59550	12.86694	K562	FXR2
chr1	160269044	160269051	-	CDS,intron-Distal	3.10453	8.75778	K562	YBX3
chr1	160268685	160268737	-	CDS,intron-Distal	3.58364	5.05725	HepG2	PABPN1
chr1	160265525	160265546	-	CDS,intron-Distal,intron-Proximal	4.13011	7.10432	HepG2	G3BP1
chr1	160282934	160282953	-	CDS,intron-Distal	3.30567	7.33147	HepG2	G3BP1
chr1	160264564	160264611	-	CDS,intron-Distal,intron-Proximal	5.43984	7.92186	HepG2	G3BP1
chr1	160261158	160261184	-	CDS,intron-Distal	3.37886	5.08489	K562	FXR2
chr1	160275557	160275563	-	CDS,intron-Distal	4.53086	5.37099	K562	FXR2
chr1	160268647	160268756	-	CDS,intron-Distal	3.23468	10.92676	K562	SND1
chr1	160276150	160276171	-	CDS,intron-Distal	3.59084	15.28270	K562	YBX3
chr1	160281760	160281800	-	CDS,intron-Distal	5.19935	34.79112	K562	LIN28B
chr1	160261659	160261706	-	CDS,intron-Distal,intron-Proximal	3.57309	3.04890	HepG2	UCHL5
chr1	160303392	160303469	-	CDS,intron-Distal,intron-Proximal	3.13520	8.94371	K562	SND1
chr1	160263223	160263242	-	CDS,intron-Distal	4.09311	9.80976	HepG2	BCLAF1
chr1	160283826	160283861	-	CDS,intron-Distal	4.15402	8.35235	K562	RPS3
chr1	160281796	160281842	-	CDS,intron-Distal,intron-Proximal	3.51139	6.21987	K562	AQR
chr1	160275268	160275311	-	CDS,intron-Distal	3.06538	6.53346	K562	ZNF622
chr1	160268979	160268992	-	CDS,intron-Distal	6.24726	45.39865	K562	LIN28B
chr1	160276272	160276284	-	CDS,intron-Distal,intron-Proximal	4.98023	8.10698	K562	RPS3
chr1	160265526	160265547	-	CDS,intron-Distal	5.30800	12.45999	K562	DDX24
chr1	160264556	160264597	-	CDS,intron-Distal,intron-Proximal	3.32177	10.06563	K562	RPS3
chr1	160267447	160267504	-	CDS,intron-Distal	4.36067	8.76426	K562	FMR1
chr1	160275547	160275563	-	CDS,intron-Distal	3.11112	10.43105	K562	YBX3
chr1	160261139	160261160	-	CDS,intron-Distal	4.16181	24.41958	K562	YBX3
chr1	160293242	160293270	-	CDS,intron-Distal	3.03191	12.27901	HepG2	BCLAF1
chr1	160262294	160262329	-	CDS,intron-Distal	3.00942	8.13247	K562	YBX3
chr1	160268976	160269010	-	CDS,intron-Distal	5.23883	16.81475	HepG2	LIN28B
chr1	160283800	160283853	-	CDS,intron-Distal	4.24839	12.25080	HepG2	PPIG
chr1	160265879	160265940	-	CDS,intron-Distal,intron-Proximal	3.02213	5.05506	HepG2	PABPN1
chr1	160305080	160305096	-	CDS,intron-Distal	3.73718	9.89108	K562	YBX3
chr1	160265594	160265648	-	CDS,intron-Distal	3.19886	19.11678	HepG2	BCLAF1
chr1	160263175	160263245	-	CDS,intron-Distal,intron-Proximal	4.60773	28.72642	K562	DDX24
chr1	160267132	160267143	-	CDS,intron-Distal,intron-Proximal	3.04173	4.50748	HepG2	GRWD1
chr1	160263185	160263216	-	CDS,intron-Distal	3.15541	11.69999	HepG2	PPIG
chr1	160263184	160263223	-	CDS,intron-Distal	3.63460	14.75988	HepG2	BCLAF1
chr1	160310005	160310020	-	CDS,intron-Distal,intron-Proximal	3.45150	3.07497	K562	SND1
chr1	160261948	160261997	-	CDS,intron-Distal,intron-Proximal	3.14569	3.22271	K562	U2AF2
chr1	160268995	160269008	-	CDS,intron-Distal	3.21895	18.81386	K562	YBX3
chr1	160295335	160295372	-	CDS,intron-Distal	4.70146	4.86570	K562	ZNF800
chr1	160265898	160265930	-	CDS,intron-Distal	3.75394	14.41702	K562	DDX24
chr1	160263192	160263245	-	CDS,intron-Distal	3.16898	4.74565	K562	FMR1
chr1	160295334	160295380	-	CDS,intron-Distal	4.12805	19.14441	K562	DDX24
chr1	160261895	160261926	-	CDS,intron-Distal	3.93243	4.99078	K562	SND1
chr1	160261801	160261806	-	CDS,intron-Distal,intron-Proximal	3.78096	4.97737	HepG2	G3BP1
chr1	160295374	160295440	-	CDS,intron-Distal	3.25959	4.11060	HepG2	SRSF1
chr1	160262326	160262356	-	CDS,intron-Distal	4.11391	6.48534	K562	FXR2
chr1	160268969	160268979	-	CDS,intron-Distal	3.31550	16.65439	K562	YBX3
chr1	160265597	160265645	-	CDS,intron-Distal	6.07488	15.00817	HepG2	G3BP1
chr1	160268944	160268977	-	CDS,intron-Distal	3.19103	5.16259	K562	FMR1
chr1	160276243	160276307	-	CDS,intron-Distal,intron-Proximal	3.34024	5.10493	HepG2	AQR
chr1	160264278	160264363	-	CDS,intron-Distal	4.45601	3.84574	HepG2	TRA2A
chr1	160268931	160268976	-	CDS,intron-Distal	4.72056	21.72138	HepG2	LIN28B
chr1	160295376	160295426	-	CDS,intron-Distal	4.00951	9.14625	K562	RPS3
chr1	160261197	160261221	-	CDS,intron-Distal	3.39973	11.39673	K562	YBX3
chr1	160282927	160282947	-	CDS,intron-Distal	3.80227	6.69001	K562	FMR1
chr1	160265596	160265649	-	CDS,intron-Distal	4.06458	5.08489	K562	FXR2
chr1	160263219	160263252	-	CDS,intron-Distal	3.91555	9.31323	HepG2	G3BP1
chr1	160305085	160305117	-	CDS,intron-Distal,intron-Proximal	4.70134	5.47569	HepG2	U2AF2
chr1	160268920	160269049	-	CDS,intron-Distal	3.52198	16.57649	HepG2	G3BP1
chr1	160280028	160280058	-	CDS,intron-Distal,intron-Proximal	3.82589	6.17334	HepG2	U2AF2
chr1	160276271	160276282	-	CDS,intron-Distal	3.05820	3.50543	K562	SND1
chr1	160275543	160275557	-	CDS,intron-Distal	4.53086	5.37099	K562	FXR2
chr1	160261250	160261276	-	CDS,intron-Distal	3.01087	9.17505	K562	YBX3
chr1	160281778	160281832	-	CDS,intron-Distal,intron-Proximal	3.80391	12.56587	K562	U2AF2
chr1	160269028	160269042	-	CDS,intron-Distal	3.08579	4.52045	K562	FMR1
chr1	160275245	160275263	-	CDS,intron-Distal	3.54334	7.93794	HepG2	BCLAF1
chr1	160275223	160275243	-	CDS,intron-Distal	3.25847	3.50543	K562	SND1
chr1	160267420	160267458	-	CDS,intron-Distal	3.34290	3.72388	HepG2	FXR2
chr1	160303395	160303464	-	CDS,intron-Distal	3.47734	12.84799	HepG2	PPIG
chr1	160264363	160264379	-	CDS,intron-Distal	4.55796	9.64961	K562	DDX24
chr1	160293295	160293319	-	CDS,intron-Distal	3.09924	6.66557	HepG2	G3BP1
chr1	160281754	160281785	-	CDS,intron-Distal	3.68022	6.76273	HepG2	G3BP1
chr1	160302189	160302263	-	CDS,intron-Distal,intron-Proximal	4.37329	21.65989	HepG2	PRPF8
chr1	160281613	160281668	-	CDS,intron-Distal,intron-Proximal	4.40399	5.05356	HepG2	PRPF8
chr1	160276983	160277035	-	CDS,intron-Distal	4.48786	10.02532	K562	FXR2
chr1	160263175	160263184	-	CDS,intron-Distal,intron-Proximal	3.21953	9.52893	HepG2	BCLAF1
chr1	160276143	160276160	-	CDS,intron-Distal,intron-Proximal	4.66113	6.26041	K562	FXR2
chr1	160276952	160277031	-	CDS,intron-Distal,intron-Proximal	5.43980	14.27506	K562	FMR1
chr1	160275222	160275237	-	CDS,intron-Distal,intron-Proximal	3.30061	4.08610	K562	FMR1
chr1	160283779	160283789	-	CDS,intron-Distal,intron-Proximal	3.64617	5.35067	K562	FXR2
chr1	160309656	160309751	-	CDS,intron-Distal,intron-Proximal	4.51167	21.53046	HepG2	PRPF8
chr1	160267439	160267501	-	CDS,intron-Distal	3.69794	10.63716	HepG2	G3BP1
chr1	160305104	160305113	-	CDS,intron-Distal,intron-Proximal	5.09520	19.43315	K562	LIN28B
chr1	160293300	160293320	-	CDS,intron-Distal	4.26290	13.21742	K562	DDX24
chr1	160264298	160264360	-	CDS,intron-Distal	4.34964	14.12387	HepG2	G3BP1
chr1	160267517	160267533	-	CDS,intron-Distal	3.33913	7.70439	HepG2	BCLAF1
chr1	160281759	160281786	-	CDS,intron-Distal	4.13691	7.56132	K562	RPS3
chr1	160282947	160282958	-	CDS,intron-Distal,intron-Proximal	4.05439	7.95984	K562	FMR1
chr1	160263178	160263254	-	CDS,intron-Distal,intron-Proximal	4.08478	16.42105	HepG2	RPS3
chr1	160268993	160269023	-	CDS,intron-Distal	4.11774	12.82638	K562	LIN28B
chr1	160264274	160264298	-	CDS,intron-Distal	3.53547	6.76273	HepG2	G3BP1
chr1	160267132	160267170	-	CDS,intron-Distal,intron-Proximal	3.21657	4.88837	HepG2	PABPN1
chr1	160261124	160261165	-	CDS,intron-Distal,intron-Proximal	3.00474	5.35995	HepG2	YBX3
chr1	160267496	160267526	-	CDS,intron-Distal	3.37106	7.51172	HepG2	PPIG
chr1	160268748	160268761	-	CDS,intron-Distal	3.97740	3.89797	K562	FXR2
chr1	160267132	160267191	-	CDS,intron-Distal,intron-Proximal	3.71051	7.60457	K562	FXR2
chr1	160263238	160263252	-	CDS,intron-Distal	3.30514	8.60746	HepG2	PPIG
chr1	160295402	160295431	-	CDS,intron-Distal	3.53547	6.50797	HepG2	G3BP1
chr1	160267477	160267536	-	CDS,intron-Distal,intron-Proximal	3.74649	13.39796	K562	LIN28B
chr1	160303421	160303454	-	CDS,intron-Distal	3.46709	9.24221	K562	DDX24
chr1	160276143	160276150	-	CDS,intron-Distal,intron-Proximal	3.18703	10.02415	K562	YBX3
chr1	160261101	160261126	-	CDS,intron-Distal,intron-Proximal	4.22183	9.59600	K562	AQR
chr1	160267142	160267191	-	CDS,intron-Distal	4.12420	8.22717	K562	FMR1
chr1	160269028	160269054	-	CDS,intron-Distal	4.06442	5.20715	K562	FXR2
chr1	160261702	160261717	-	CDS,intron-Distal,intron-Proximal	3.34295	5.27398	HepG2	G3BP1
chr1	160280027	160280057	-	CDS,intron-Distal,intron-Proximal	3.58223	3.06676	K562	U2AF2
chr1	160275278	160275313	-	CDS,intron-Distal	3.56975	10.67070	HepG2	BCLAF1
chr1	160278833	160278925	-	CDS,intron-Distal,intron-Proximal	3.80676	11.14388	HepG2	PRPF8
chr1	160278941	160279018	-	CDS,intron-Distal,intron-Proximal	4.57419	21.45630	K562	SF3B4
chr1	160264607	160264632	-	CDS,intron-Distal	3.11860	9.13138	K562	AQR
chr1	160302324	160302357	-	CDS,intron-Distal,intron-Proximal	3.21352	8.39164	K562	U2AF2
chr1	160265438	160265527	-	CDS,intron-Distal,intron-Proximal	4.39634	16.97445	K562	AQR
chr1	160278893	160278916	-	CDS,intron-Distal	5.11413	7.95701	HepG2	PPIG
chr1	160261160	160261197	-	CDS,intron-Distal	3.70809	21.87638	K562	YBX3
chr1	160309709	160309751	-	CDS,intron-Distal	4.55398	9.76012	HepG2	PPIG
chr1	160293196	160293247	-	CDS,intron-Distal,intron-Proximal	4.84467	6.26248	HepG2	PRPF8
chr1	160264275	160264298	-	CDS,intron-Distal	4.62358	9.64961	K562	DDX24
chr1	160264573	160264606	-	CDS,intron-Distal,intron-Proximal	4.51235	3.71264	HepG2	FXR2
chr1	160268694	160268729	-	CDS,intron-Distal	3.02319	3.37862	K562	FXR2
chr1	160283779	160283799	-	CDS,intron-Distal,intron-Proximal	3.13808	5.63248	HepG2	G3BP1
chr1	160309697	160309705	-	CDS,intron-Distal,intron-Proximal	5.15422	19.91476	K562	LIN28B
chr1	160275222	160275236	-	CDS,intron-Distal,intron-Proximal	3.59255	5.10436	K562	FXR2
chr1	160261902	160261924	-	CDS,intron-Distal	3.93993	6.36347	HepG2	PPIG
chr1	160267515	160267534	-	CDS,intron-Distal	3.74692	4.60670	K562	FXR2
chr1	160260361	160260366	-	CDS,intron-Distal	3.03118	3.41665	HepG2	GRWD1
chr1	160281727	160281747	-	CDS,intron-Distal	3.95247	12.91945	K562	LIN28B
chr1	160261695	160261760	-	CDS,intron-Distal,intron-Proximal	3.73811	6.22597	HepG2	EFTUD2
chr1	160276952	160276972	-	CDS,intron-Distal,intron-Proximal	3.22872	3.77213	K562	SND1
chr1	160264305	160264346	-	CDS,intron-Distal	4.82953	16.94729	K562	DDX24
chr1	160281786	160281827	-	CDS,intron-Distal,intron-Proximal	3.46865	9.30274	HepG2	U2AF2
chr1	160261250	160261283	-	CDS,intron-Distal	4.46914	13.52497	HepG2	BCLAF1
chr1	160302284	160302322	-	CDS,intron-Distal	3.61091	4.99842	HepG2	PPIG
chr1	160276953	160276979	-	CDS,intron-Distal	4.44076	8.89973	K562	RPS3
chr1	160302325	160302357	-	CDS,intron-Distal,intron-Proximal	4.38791	9.71879	K562	SF3B4
chr1	160276952	160276980	-	CDS,intron-Distal,intron-Proximal	3.88851	7.78330	HepG2	G3BP1
chr1	160302252	160302283	-	CDS,intron-Distal	5.42493	8.02646	K562	FMR1
chr1	160281720	160281738	-	CDS,intron-Distal	4.00743	16.15076	K562	YBX3
chr1	160268931	160268974	-	CDS,intron-Distal	7.38288	92.78989	K562	LIN28B
chr1	160293224	160293270	-	CDS,intron-Distal	4.78528	12.02487	HepG2	G3BP1
chr1	160283831	160283842	-	CDS,intron-Distal	5.07459	4.08330	K562	FXR2
chr1	160293222	160293273	-	CDS,intron-Distal	3.51098	12.63270	K562	LIN28B
chr1	160268939	160268986	-	CDS,intron-Distal	3.08685	12.64681	K562	RPS3
chr1	160305070	160305102	-	CDS,intron-Distal	4.64737	19.91217	K562	LIN28B
chr1	160275224	160275237	-	CDS,intron-Distal	3.97248	6.24124	HepG2	G3BP1
chr1	160263185	160263217	-	CDS,intron-Distal	3.89906	10.54900	HepG2	G3BP1
chr1	160261124	160261139	-	CDS,intron-Distal,intron-Proximal	3.94714	15.68460	K562	YBX3
chr1	160303410	160303462	-	CDS,intron-Distal	3.44769	13.09340	HepG2	BCLAF1
chr1	160268976	160268993	-	CDS,intron-Distal	3.49996	5.20714	HepG2	YBX3
chr1	160302298	160302359	-	CDS,intron-Distal,intron-Proximal	3.47997	23.46473	HepG2	U2AF2
chr1	160264626	160264677	-	CDS,intron-Distal,intron-Proximal	3.32658	7.26494	HepG2	PRPF8
chr1	160265604	160265649	-	CDS,intron-Distal	4.49653	23.22821	K562	DDX24
chr1	160281747	160281753	-	CDS,intron-Distal	4.70045	22.05531	K562	LIN28B
chr1	160281619	160281667	-	CDS,intron-Distal,intron-Proximal	3.74533	4.75435	K562	EFTUD2
chr1	160283905	160283909	-	CDS,intron-Distal	3.21431	5.34378	K562	YBX3
chr1	160264646	160264669	-	CDS,intron-Distal,intron-Proximal	4.53103	27.12110	K562	AQR
chr1	160264624	160264646	-	CDS,intron-Distal	4.28657	9.10444	HepG2	G3BP1
chr1	160265610	160265667	-	CDS,intron-Distal,intron-Proximal	4.17319	6.24305	HepG2	AQR
chr1	160276176	160276202	-	CDS,intron-Distal	3.62883	19.48200	K562	YBX3
chr1	160267132	160267140	-	CDS,intron-Distal,intron-Proximal	3.79529	10.10467	HepG2	BCLAF1
chr1	160261955	160261991	-	CDS,intron-Distal,intron-Proximal	4.37818	9.79392	K562	BUD13
chr1	160265910	160265924	-	CDS,intron-Distal	3.18002	3.11960	K562	FMR1
chr1	160309734	160309771	-	CDS,intron-Distal	4.01134	6.54545	K562	FMR1
chr1	160265917	160265939	-	CDS,intron-Distal	3.54422	12.28203	HepG2	BCLAF1
chr1	160276996	160277044	-	CDS,intron-Distal,intron-Proximal	3.70666	7.74495	HepG2	U2AF2
chr1	160282861	160282876	-	CDS,intron-Distal,intron-Proximal	4.59293	7.53589	K562	AQR
chr1	160261979	160261985	-	CDS,intron-Distal	4.10543	5.73361	K562	YBX3
chr1	160267448	160267496	-	CDS,intron-Distal	4.20312	11.91397	HepG2	PPIG
chr1	160264310	160264341	-	CDS,intron-Distal	3.70379	5.79076	K562	RPS3
chr1	160263175	160263185	-	CDS,intron-Distal,intron-Proximal	4.29470	6.49445	HepG2	G3BP1
chr1	160263017	160263024	-	CDS,intron-Distal	4.36630	6.81381	K562	DDX24
chr1	160261901	160261938	-	CDS,intron-Distal	5.34160	5.38689	K562	FMR1
chr1	160261124	160261158	-	CDS,intron-Distal,intron-Proximal	3.65863	7.54878	K562	FXR2
chr1	160293226	160293242	-	CDS,intron-Distal	3.27700	10.35084	HepG2	BCLAF1
chr1	160282882	160282922	-	CDS,intron-Distal	3.80706	5.93591	K562	FXR2
chr1	160264480	160264574	-	CDS,intron-Distal,intron-Proximal	3.63598	12.48179	HepG2	PRPF8
chr1	160264341	160264383	-	CDS,intron-Distal	5.35354	13.75688	K562	RPS3
chr1	160265924	160265939	-	CDS,intron-Distal	3.54079	4.33460	K562	FMR1
chr1	160267170	160267219	-	CDS,intron-Distal	3.51802	4.02339	HepG2	PABPN1
chr1	160261943	160262006	-	CDS,intron-Distal,intron-Proximal	5.31979	6.44303	K562	AQR
chr1	160268638	160268666	-	CDS,intron-Distal	3.50051	8.55244	HepG2	G3BP1
chr1	160267133	160267156	-	CDS,intron-Distal	3.70405	13.49775	K562	DDX24
chr1	160261221	160261250	-	CDS,intron-Distal	3.08071	11.57227	K562	YBX3
chr1	160265930	160265938	-	CDS,intron-Distal	4.17648	8.98140	K562	DDX24
chr1	160262299	160262326	-	CDS,intron-Distal	4.39360	6.11658	K562	FXR2
chr1	160293247	160293303	-	CDS,intron-Distal	3.05873	5.21012	K562	FXR2
chr1	160281792	160281853	-	CDS,intron-Distal,intron-Proximal	3.57253	11.01899	K562	SF3B4
chr1	160281753	160281760	-	CDS,intron-Distal	5.43587	33.68772	K562	LIN28B
chr1	160309709	160309734	-	CDS,intron-Distal	3.15026	3.59846	K562	FMR1
chr1	160268763	160268816	-	CDS,intron-Distal,intron-Proximal	3.78531	13.62547	HepG2	U2AF2
chr1	160260448	160260505	-	CDS,intron-Distal,intron-Proximal	3.70636	6.21987	K562	AQR
chr1	160283837	160283854	-	CDS,intron-Distal	3.47270	6.76273	HepG2	G3BP1
chr1	160264270	160264376	-	CDS,intron-Distal,intron-Proximal	3.42085	14.37764	K562	UCHL5
chr1	160275223	160275245	-	CDS,intron-Distal	3.18506	11.03162	HepG2	BCLAF1
chr1	160261046	160261101	-	intron-Distal,intron-Proximal	5.57003	14.81877	K562	AQR
chr1	160262220	160262274	-	intron-Distal,intron-Proximal	5.63850	10.44569	K562	AQR
chr1	160298333	160298377	-	intron-Distal	4.63077	17.41591	HepG2	QKI
chr1	160279903	160279965	-	intron-Distal,intron-Proximal	4.33754	6.95984	K562	EFTUD2
chr1	160263138	160263175	-	intron-Distal,intron-Proximal	4.41405	4.94356	HepG2	PRPF8
chr1	160264421	160264512	-	intron-Distal,intron-Proximal	4.19156	8.19973	HepG2	EFTUD2
chr1	160281166	160281198	-	intron-Distal	3.12809	4.69920	HepG2	HNRNPC
chr1	160279253	160279323	-	intron-Distal	4.59643	5.33616	HepG2	U2AF1
chr1	160289208	160289264	-	intron-Distal	3.33468	3.90822	HepG2	HNRNPM
chr1	160289903	160289941	-	intron-Distal	4.45725	4.48623	K562	EXOSC5
chr1	160312874	160312918	-	intron-Distal	3.99211	4.98250	K562	AQR
chr1	160312805	160312876	-	intron-Distal	3.95285	4.21913	K562	EFTUD2
chr1	160300061	160300114	-	intron-Distal	3.64879	5.26902	HepG2	XPO5
chr1	160264465	160264542	-	intron-Distal,intron-Proximal	5.02156	11.65116	K562	AQR
chr1	160278841	160278884	-	intron-Distal,intron-Proximal	3.98134	5.35619	K562	AQR
chr1	160290348	160290402	-	intron-Distal	3.27048	3.25288	HepG2	HNRNPC
chr1	160289131	160289182	-	intron-Distal	4.61477	5.44433	K562	EXOSC5
chr1	160260159	160260194	-	intron-Distal,intron-Proximal	3.93857	7.25401	K562	TIA1
chr1	160298416	160298473	-	intron-Distal	4.72102	12.19689	HepG2	QKI
chr1	160307543	160307599	-	intron-Distal	4.89808	4.71107	K562	CSTF2T
chr1	160308256	160308326	-	intron-Distal	3.87816	5.18845	HepG2	U2AF2
chr1	160276847	160276923	-	intron-Distal,intron-Proximal	5.60006	10.06151	K562	RBM22
chr1	160280608	160280642	-	intron-Distal	3.00384	8.42939	HepG2	U2AF2
chr1	160305127	160305173	-	intron-Distal,intron-Proximal	5.77672	7.41223	K562	SF3B4
chr1	160290356	160290398	-	intron-Distal	4.16477	3.59917	K562	EXOSC5
chr1	160304570	160304634	-	intron-Distal	4.36355	4.55788	HepG2	QKI
chr1	160282833	160282861	-	intron-Distal,intron-Proximal	5.76427	10.44569	K562	AQR
chr1	160280612	160280677	-	intron-Distal	3.04508	3.28108	K562	U2AF2
chr1	160276887	160276923	-	intron-Distal,intron-Proximal	4.13941	6.72755	HepG2	RBM22
chr1	160312259	160312308	-	intron-Distal	3.95334	3.57189	K562	ILF3
chr1	160281198	160281220	-	intron-Distal	3.12003	4.69920	HepG2	HNRNPC
chr1	160298377	160298412	-	intron-Distal	4.74396	12.96424	HepG2	QKI
chr1	160278968	160278994	-	intron-Distal,intron-Proximal	3.97144	5.86055	K562	SMNDC1
chr1	160285195	160285264	-	intron-Distal	4.50377	5.84463	HepG2	SUGP2
chr1	160279248	160279331	-	intron-Distal	3.31552	5.93697	K562	U2AF1
chr1	160261286	160261336	-	intron-Distal,intron-Proximal	3.63795	7.67169	K562	SF3B4
chr1	160281615	160281633	-	intron-Distal,intron-Proximal	4.50698	5.97994	K562	AQR
chr1	160266986	160267019	-	intron-Distal	4.05081	3.64144	K562	EFTUD2
chr1	160295472	160295531	-	intron-Distal,intron-Proximal	3.86540	6.24904	HepG2	PTBP1
chr1	160303282	160303334	-	intron-Distal,intron-Proximal	4.18512	8.65685	K562	TIA1
chr1	160278825	160278878	-	intron-Distal,intron-Proximal	4.42707	4.15622	HepG2	TIAL1
chr1	160263392	160263406	-	intron-Distal	4.64699	8.70712	HepG2	XPO5
chr1	160282680	160282735	-	intron-Distal	3.92642	6.80869	K562	AQR
chr1	160279246	160279322	-	intron-Distal	3.71105	10.18578	K562	U2AF2
chr1	160279816	160279883	-	intron-Distal,intron-Proximal	3.39165	4.06432	HepG2	KHSRP
chr1	160262871	160262951	-	intron-Distal,intron-Proximal	4.23863	7.79506	K562	AQR
chr1	160298974	160299104	-	intron-Distal	3.97942	18.52555	HepG2	QKI
chr1	160266987	160267021	-	intron-Distal	3.28811	3.47285	K562	PRPF8
chr1	160309605	160309653	-	intron-Distal,intron-Proximal	4.13863	9.41299	K562	EFTUD2
chr1	160292948	160293004	-	intron-Distal	4.06319	4.70109	K562	U2AF2
chr1	160279891	160279937	-	intron-Distal,intron-Proximal	3.37000	7.76412	HepG2	U2AF2
chr1	160274813	160274840	-	intron-Distal	3.64095	5.35459	K562	KHSRP
chr1	160312282	160312306	-	intron-Distal	4.33510	3.18711	HepG2	ILF3
chr1	160264669	160264678	-	intron-Distal,intron-Proximal	4.85152	17.69855	K562	AQR
chr1	160264466	160264503	-	intron-Distal,intron-Proximal	4.10191	6.08151	K562	BUD13
chr1	160264474	160264555	-	intron-Distal,intron-Proximal	3.33062	7.07647	K562	PRPF8
chr1	160312261	160312282	-	intron-Distal	4.35663	3.38675	HepG2	ILF3
chr1	160279016	160279120	-	intron-Distal,intron-Proximal	3.17888	4.44627	K562	KHSRP
chr1	160292729	160292785	-	intron-Distal	3.39449	3.14999	K562	EXOSC5
chr1	160309562	160309605	-	intron-Distal,intron-Proximal	3.70833	8.82495	K562	EFTUD2
chr1	160264443	160264531	-	intron-Distal,intron-Proximal	4.11839	14.22334	K562	EFTUD2
chr1	160289212	160289258	-	intron-Distal	3.37229	5.29774	K562	EXOSC5
chr1	160301379	160301443	-	intron-Distal	3.66495	9.29703	HepG2	HNRNPC
chr1	160281646	160281658	-	intron-Distal,intron-Proximal	4.20859	4.98250	K562	AQR
chr1	160279256	160279328	-	intron-Distal	3.66480	19.69967	HepG2	U2AF2
chr1	160264131	160264213	-	intron-Distal,intron-Proximal	4.43120	5.33971	K562	HNRNPK
chr1	160273196	160273294	-	intron-Distal	3.19829	5.35016	HepG2	SUGP2
chr1	160263356	160263392	-	intron-Distal	4.97072	10.84450	HepG2	XPO5
chr1	160279344	160279363	-	intron-Distal	3.06661	4.05586	HepG2	U2AF2
chr1	160299962	160300054	-	intron-Distal	4.22875	13.70448	HepG2	QKI
chr1	160277059	160277111	-	intron-Distal,intron-Proximal	3.29037	3.39513	HepG2	RBM5
chr1	160269067	160269114	-	intron-Distal,intron-Proximal	4.26401	5.29744	K562	U2AF2
chr1	160288913	160288948	-	intron-Distal	3.96153	3.30687	K562	EXOSC5
chr1	160277048	160277087	-	intron-Distal,intron-Proximal	5.05093	5.90023	K562	SF3B4
chr1	160307548	160307599	-	intron-Distal	3.86098	3.88068	HepG2	CSTF2
chr1	160303289	160303350	-	intron-Distal,intron-Proximal	4.63885	6.57621	HepG2	TIAL1
chr1	160292716	160292801	-	intron-Distal	5.46361	12.11491	K562	TARDBP
chr1	160306225	160306349	-	intron-Distal	4.26424	8.78208	HepG2	KHSRP
chr1	160285361	160285469	-	intron-Distal	3.33480	4.63410	HepG2	SUGP2
chr1	160300124	160300248	-	intron-Distal	3.54022	11.13897	K562	EFTUD2
chr1	160261562	160261598	-	intron-Distal,intron-Proximal	5.18827	7.28294	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for COPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for COPA is not available on ENCORE database.
119 RBPs can affect the levels of COPA.

The Knockdown/knockout RNA-Seq assay for COPA is not available on ENCORE database.

119 RBPs can affect the gene expression of COPA :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COPA	ENSG00000122218.10	4582.72380	6472.58680	-0.49810	17.00580	15.77000	HepG2	ACO1
COPA	ENSG00000122218.10	3649.27600	5305.75020	-0.53990	6.77480	5.30120	HepG2	ADAR
COPA	ENSG00000122218.10	5134.35840	8905.58450	-0.79450	10.72560	9.74520	HepG2	AKAP1
COPA	ENSG00000122218.10	4835.05260	6139.90350	-0.34470	2.57310	1.56900	HepG2	AKAP8
COPA	ENSG00000122218.10	5370.42860	7368.48460	-0.45630	4.73610	3.72060	HepG2	ASCC1
COPA	ENSG00000122218.10	3643.46310	4943.24880	-0.44010	3.95220	2.83110	HepG2	BCCIP
COPA	ENSG00000122218.10	3288.78280	4037.48430	-0.29590	2.67690	2.08750	HepG2	BOP1
COPA	ENSG00000122218.10	5976.91210	7610.41460	-0.34860	2.19920	1.33870	HepG2	CCAR1
COPA	ENSG00000122218.10	5429.47490	6471.00170	-0.25320	5.69970	4.80770	HepG2	CKAP4
COPA	ENSG00000122218.10	3589.06610	5138.76280	-0.51780	3.16100	2.34010	HepG2	CNOT7
COPA	ENSG00000122218.10	4530.96530	3706.57840	0.28960	2.40240	1.75520	HepG2	CPSF6
COPA	ENSG00000122218.10	2235.93580	3053.04690	-0.44940	5.24580	3.82920	HepG2	CSTF2
COPA	ENSG00000122218.10	5939.67950	7411.26020	-0.31930	5.58510	4.73220	HepG2	CELF1
COPA	ENSG00000122218.10	4131.15620	5986.13350	-0.53510	17.21100	15.54210	HepG2	DDX19B
COPA	ENSG00000122218.10	4367.53050	5448.57800	-0.31910	4.89550	3.38320	HepG2	DDX1
COPA	ENSG00000122218.10	5852.33670	8530.57820	-0.54360	6.28920	5.38400	HepG2	DDX3X
COPA	ENSG00000122218.10	4722.77250	7328.64510	-0.63390	7.07760	6.12790	HepG2	DDX6
COPA	ENSG00000122218.10	5407.97510	6192.46540	-0.19540	2.37810	1.74300	HepG2	DKC1
COPA	ENSG00000122218.10	3744.63860	5342.64780	-0.51270	11.96660	10.58610	HepG2	DNAJC21
COPA	ENSG00000122218.10	4659.06570	5295.43770	-0.18470	3.17430	2.48400	HepG2	DNAJC2
COPA	ENSG00000122218.10	4075.89290	4985.19460	-0.29050	2.31990	1.47390	HepG2	EEF2
COPA	ENSG00000122218.10	4231.84440	5244.85270	-0.30960	3.68280	2.33500	HepG2	EIF2S2
COPA	ENSG00000122218.10	4520.21320	5350.49990	-0.24330	2.40440	1.39720	HepG2	EIF3G
COPA	ENSG00000122218.10	3843.97350	7784.67190	-1.01800	16.83070	15.26370	HepG2	EIF4A3
COPA	ENSG00000122218.10	6210.68750	7530.99800	-0.27810	2.27230	1.52840	HepG2	EIF4G2
COPA	ENSG00000122218.10	4777.82660	5989.49380	-0.32610	3.33970	2.14520	HepG2	ESF1
COPA	ENSG00000122218.10	6189.47930	10097.44410	-0.70610	30.03770	28.42350	HepG2	ETF1
COPA	ENSG00000122218.10	5282.83600	6324.71540	-0.25970	2.56400	1.76050	HepG2	EWSR1
COPA	ENSG00000122218.10	4779.41440	6982.30290	-0.54690	5.83280	4.75610	HepG2	FIP1L1
COPA	ENSG00000122218.10	5060.25320	6753.79060	-0.41650	2.59440	1.51220	HepG2	FUS
COPA	ENSG00000122218.10	5277.65290	7286.52450	-0.46530	4.41280	3.58080	HepG2	G3BP1
COPA	ENSG00000122218.10	2935.85660	3603.06470	-0.29540	2.41180	1.58080	HepG2	GEMIN5
COPA	ENSG00000122218.10	5526.75130	4201.55240	0.39540	3.32020	2.62380	HepG2	GPKOW
COPA	ENSG00000122218.10	5378.67350	6179.35930	-0.20020	2.82950	1.84160	HepG2	HDGF
COPA	ENSG00000122218.10	3648.42170	5393.83150	-0.56400	9.38720	8.30070	HepG2	HNRNPA1
COPA	ENSG00000122218.10	3281.50300	5999.62940	-0.87050	19.98070	18.28810	HepG2	HNRNPC
COPA	ENSG00000122218.10	3917.24220	5959.96430	-0.60550	21.37020	19.79660	HepG2	HNRNPU
COPA	ENSG00000122218.10	5368.53720	6087.90810	-0.18140	3.17860	2.39830	HepG2	ILF2
COPA	ENSG00000122218.10	3790.41950	4896.82640	-0.36950	2.43780	1.33580	HepG2	KHDRBS1
COPA	ENSG00000122218.10	5225.36660	7449.93180	-0.51170	4.18460	2.92940	HepG2	KHSRP
COPA	ENSG00000122218.10	5528.52070	7858.17460	-0.50730	5.52470	4.60710	HepG2	MAGOH
COPA	ENSG00000122218.10	5051.86540	7901.99000	-0.64540	7.64130	6.63230	HepG2	MATR3
COPA	ENSG00000122218.10	4812.78410	8087.99130	-0.74890	10.72660	9.52090	HepG2	NCBP2
COPA	ENSG00000122218.10	5277.55790	7901.50820	-0.58230	13.66190	12.02740	HepG2	NOL12
COPA	ENSG00000122218.10	6477.95760	4696.92710	0.46370	2.36700	1.55730	HepG2	PABPC1
COPA	ENSG00000122218.10	5491.56410	7202.26410	-0.39120	3.47060	2.66740	HepG2	PABPC4
COPA	ENSG00000122218.10	4812.81420	5899.35780	-0.29370	5.35330	4.22760	HepG2	PARN
COPA	ENSG00000122218.10	5297.83840	7576.87910	-0.51620	16.19470	14.92670	HepG2	PCBP1
COPA	ENSG00000122218.10	2781.95420	3346.57800	-0.26660	2.90710	1.64480	HepG2	PKM
COPA	ENSG00000122218.10	4510.63260	5315.81380	-0.23700	2.96960	2.20950	HepG2	PPIL4
COPA	ENSG00000122218.10	4643.60520	5777.82760	-0.31530	6.05050	4.95400	HepG2	PRPF4
COPA	ENSG00000122218.10	4946.49200	6720.99630	-0.44230	2.62440	1.43390	HepG2	PRPF6
COPA	ENSG00000122218.10	5478.48610	7709.91040	-0.49290	14.48770	13.42750	HepG2	PTBP1
COPA	ENSG00000122218.10	5482.33510	7542.81700	-0.46030	6.59390	5.72780	HepG2	PUF60
COPA	ENSG00000122218.10	6378.58750	8007.19240	-0.32810	9.88380	8.90840	HepG2	PUM1
COPA	ENSG00000122218.10	6905.71500	8001.24470	-0.21240	2.11440	1.52400	HepG2	PUM2
COPA	ENSG00000122218.10	5100.88680	6592.72340	-0.37010	9.92730	8.88270	HepG2	PUS1
COPA	ENSG00000122218.10	6380.07150	8349.69820	-0.38820	6.87710	5.95770	HepG2	QKI
COPA	ENSG00000122218.10	3006.91330	6169.61560	-1.03690	9.40500	8.15950	HepG2	RAVER1
COPA	ENSG00000122218.10	6743.15680	7831.61690	-0.21590	2.13340	1.36750	HepG2	RBM15
COPA	ENSG00000122218.10	4835.47420	8439.58830	-0.80350	30.11400	28.76840	HepG2	RBM22
COPA	ENSG00000122218.10	4156.94540	6205.41760	-0.57800	7.78970	6.11470	HepG2	RBM27
COPA	ENSG00000122218.10	3991.24780	5039.07180	-0.33630	2.54330	1.52760	HepG2	RCC2
COPA	ENSG00000122218.10	5461.38290	8580.26330	-0.65180	25.58020	24.26920	HepG2	NELFE
COPA	ENSG00000122218.10	5389.52790	7991.57920	-0.56830	20.00730	18.60570	HepG2	RECQL
COPA	ENSG00000122218.10	4009.85450	6276.82880	-0.64650	11.02320	9.81550	HepG2	RPLP0
COPA	ENSG00000122218.10	4505.56110	6060.73760	-0.42780	2.47010	1.57680	HepG2	RPS10
COPA	ENSG00000122218.10	2533.51560	3937.79590	-0.63620	11.72190	10.56340	HepG2	RPS19
COPA	ENSG00000122218.10	3854.90150	5723.06170	-0.57010	7.78290	6.48510	HepG2	RPS2
COPA	ENSG00000122218.10	3770.00090	5160.39450	-0.45290	3.14070	2.29010	HepG2	RPS3A
COPA	ENSG00000122218.10	3756.17150	5841.98000	-0.63720	9.43080	7.46710	HepG2	RPS5
COPA	ENSG00000122218.10	1975.10750	3708.15150	-0.90880	14.06170	12.52580	HepG2	RRP9
COPA	ENSG00000122218.10	4364.09750	5307.61810	-0.28240	6.07010	5.17190	HepG2	SAFB2
COPA	ENSG00000122218.10	3667.75950	4859.40180	-0.40590	2.83540	1.51010	HepG2	SART3
COPA	ENSG00000122218.10	4136.34480	7742.53420	-0.90440	11.07520	9.66510	HepG2	SF3A3
COPA	ENSG00000122218.10	5124.54220	8026.73830	-0.64740	25.27090	23.79050	HepG2	SF3B4
COPA	ENSG00000122218.10	3952.03230	6189.59040	-0.64720	35.51580	33.65980	HepG2	SMN1
COPA	ENSG00000122218.10	3102.58020	4415.86070	-0.50920	3.25320	2.40380	HepG2	SNRNP70
COPA	ENSG00000122218.10	6335.35140	9532.19300	-0.58940	26.15560	25.02330	HepG2	SRFBP1
COPA	ENSG00000122218.10	6881.81250	8378.28870	-0.28390	6.27710	5.63600	HepG2	SRSF1
COPA	ENSG00000122218.10	5173.17130	7447.62370	-0.52570	16.30870	14.96710	HepG2	SRSF5
COPA	ENSG00000122218.10	4952.79320	6816.28030	-0.46070	13.94240	12.87330	HepG2	SRSF9
COPA	ENSG00000122218.10	5930.86660	8276.18030	-0.48070	15.48650	14.47440	HepG2	SSB
COPA	ENSG00000122218.10	4596.22420	6660.98110	-0.53530	5.18540	3.49110	HepG2	SSRP1
COPA	ENSG00000122218.10	2826.08280	4489.07780	-0.66760	6.36460	4.63800	HepG2	STIP1
COPA	ENSG00000122218.10	4101.75510	5765.69750	-0.49130	3.26960	1.95670	HepG2	SUB1
COPA	ENSG00000122218.10	5283.56820	8469.83680	-0.68080	35.47510	33.67770	HepG2	SUCLG1
COPA	ENSG00000122218.10	5599.25780	7531.04250	-0.42760	8.91610	8.00240	HepG2	TAF15
COPA	ENSG00000122218.10	5803.24190	6919.67320	-0.25380	2.59110	1.77970	HepG2	TIA1
COPA	ENSG00000122218.10	3075.64470	5791.25950	-0.91300	28.73810	27.44230	HepG2	TIAL1
COPA	ENSG00000122218.10	3932.44310	6195.18780	-0.65570	5.59510	3.54630	HepG2	TRA2A
COPA	ENSG00000122218.10	4898.28690	5842.98560	-0.25440	4.24000	3.57100	HepG2	TRIM56
COPA	ENSG00000122218.10	3504.74750	5972.35410	-0.76900	14.00570	12.55880	HepG2	U2AF1
COPA	ENSG00000122218.10	2395.48130	4352.20430	-0.86140	2.54790	1.60200	HepG2	U2AF2
COPA	ENSG00000122218.10	1864.59710	2857.94680	-0.61610	7.62430	6.36250	HepG2	UCHL5
COPA	ENSG00000122218.10	5503.44470	6866.45490	-0.31920	7.42010	6.36850	HepG2	UPF1
COPA	ENSG00000122218.10	3306.32170	4429.79110	-0.42200	2.85460	1.83420	HepG2	UPF2
COPA	ENSG00000122218.10	3405.32390	6629.27590	-0.96110	54.31010	52.17950	HepG2	UTP3
COPA	ENSG00000122218.10	3137.21720	4622.19460	-0.55910	4.25510	2.89340	HepG2	XPO5
COPA	ENSG00000122218.10	4588.30320	6785.10320	-0.56440	4.32640	3.01380	HepG2	XRCC6
COPA	ENSG00000122218.10	3580.86040	4762.70480	-0.41150	4.28650	3.38960	HepG2	XRN2
COPA	ENSG00000122218.10	4791.77140	5702.15870	-0.25090	4.09600	3.30330	HepG2	ZC3H8
COPA	ENSG00000122218.10	5706.59990	7551.77070	-0.40420	12.27720	11.33090	HepG2	ZNF622
COPA	ENSG00000122218.10	3999.27230	6164.25920	-0.62420	5.53040	3.61940	HepG2	ZRANB2
COPA	ENSG00000122218.10	8956.13420	11000.25770	-0.29660	3.41900	2.03300	K562	APOBEC3C
COPA	ENSG00000122218.10	5728.77590	4363.33610	0.39270	3.92610	2.88550	K562	BOP1
COPA	ENSG00000122218.10	17517.84020	20819.39490	-0.24910	2.64350	1.50240	K562	CCDC124
COPA	ENSG00000122218.10	5804.45990	4639.33550	0.32310	4.09500	3.14180	K562	CPSF6
COPA	ENSG00000122218.10	15677.76480	20440.63640	-0.38270	3.43610	1.80130	K562	DDX19B
COPA	ENSG00000122218.10	8015.95670	9416.57040	-0.23230	3.50810	2.78650	K562	DDX47
COPA	ENSG00000122218.10	3528.43440	4612.90490	-0.38660	3.57120	2.03010	K562	DHX30
COPA	ENSG00000122218.10	3536.98310	4431.15550	-0.32520	3.02880	1.62080	K562	DNAJC21
COPA	ENSG00000122218.10	4560.62620	6005.59980	-0.39710	2.83230	1.53670	K562	EEF2
COPA	ENSG00000122218.10	5656.84870	6773.97220	-0.26000	3.65850	2.75210	K562	EIF3G
COPA	ENSG00000122218.10	6239.00380	9139.65130	-0.55080	5.39510	4.25120	K562	EIF4A3
COPA	ENSG00000122218.10	9831.06640	12466.98870	-0.34270	7.54490	6.00790	K562	EIF4G2
COPA	ENSG00000122218.10	8923.96520	7247.00810	0.30020	3.12340	1.41670	K562	FASTKD2
COPA	ENSG00000122218.10	5318.96380	9504.90400	-0.83750	14.54410	13.26900	K562	FXR1
COPA	ENSG00000122218.10	6598.76380	4429.30950	0.57500	9.51080	8.02670	K562	GPKOW
COPA	ENSG00000122218.10	6919.22510	8356.23000	-0.27220	2.41000	1.70230	K562	GRSF1
COPA	ENSG00000122218.10	7242.11100	5434.06130	0.41430	4.24470	2.47270	K562	LARP7
COPA	ENSG00000122218.10	6616.38680	11125.81940	-0.74980	16.87930	14.67150	K562	MAGOH
COPA	ENSG00000122218.10	8299.89580	11103.16620	-0.41980	6.24720	4.77930	K562	MATR3
COPA	ENSG00000122218.10	5362.96440	4323.54850	0.31070	3.15520	2.21670	K562	METAP2
COPA	ENSG00000122218.10	6794.85720	9899.12540	-0.54290	9.00820	7.21140	K562	PCBP2
COPA	ENSG00000122218.10	4288.16390	5646.39730	-0.39700	4.18100	3.25950	K562	PRPF8
COPA	ENSG00000122218.10	6123.48100	10809.47080	-0.81990	22.03900	20.23890	K562	PTBP1
COPA	ENSG00000122218.10	10968.00260	13602.09090	-0.31050	3.25500	2.37140	K562	PUF60
COPA	ENSG00000122218.10	12101.72030	14470.33110	-0.25790	3.64840	2.41280	K562	PUM1
COPA	ENSG00000122218.10	11697.54700	14175.63710	-0.27720	5.25150	3.90930	K562	PUM2
COPA	ENSG00000122218.10	14910.15360	17517.07350	-0.23250	2.45780	1.89300	K562	RBM15
COPA	ENSG00000122218.10	6007.24910	10364.69620	-0.78690	15.96090	13.74740	K562	RBM22
COPA	ENSG00000122218.10	5436.10960	4590.13980	0.24390	2.51140	1.57080	K562	RCC2
COPA	ENSG00000122218.10	7595.39150	10907.25390	-0.52210	6.62830	4.85470	K562	NELFE
COPA	ENSG00000122218.10	3876.63850	5772.93520	-0.57450	4.94380	3.16510	K562	RRP9
COPA	ENSG00000122218.10	4608.24220	5556.22080	-0.26990	2.64210	1.58580	K562	SAFB
COPA	ENSG00000122218.10	7036.63560	9439.96730	-0.42390	4.69350	3.56870	K562	SF3B4
COPA	ENSG00000122218.10	7034.41650	10596.94600	-0.59110	12.14500	10.65750	K562	SRSF1
COPA	ENSG00000122218.10	8523.65240	6987.35980	0.28660	4.37420	2.71250	K562	SSB
COPA	ENSG00000122218.10	4632.44460	6254.93270	-0.43320	7.03310	5.70660	K562	SYNCRIP
COPA	ENSG00000122218.10	7643.63980	10724.66980	-0.48860	6.06610	4.98890	K562	TARDBP
COPA	ENSG00000122218.10	10085.23050	8402.61250	0.26320	4.20930	2.64400	K562	TROVE2
COPA	ENSG00000122218.10	7126.81850	5785.82630	0.30060	2.47680	1.51890	K562	UCHL5
COPA	ENSG00000122218.10	13024.92360	8717.06340	0.57930	24.30590	22.43480	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for COPA is not available on ENCORE database.

12 RBPs can affect the splicing of COPA :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	COPA	ENSG00000122218.10	chr1	-	160279831	160280048			160278890	160278966	160281657	160281808	-0.05600	0.00006	0.00196	excluded	K562	SF3B4
SE	COPA	ENSG00000122218.10	chr1	-	160276952	160277035			160276131	160276283	160278890	160278966	-0.06000	0.00237	0.04187	excluded	HepG2	U2AF1
SE	COPA	ENSG00000122218.10	chr1	-	160295332	160295358			160293220	160293320	160302237	160302347	-0.06900	0.00103	0.03232	excluded	K562	AKAP8L
SE	COPA	ENSG00000122218.10	chr1	-	160295398	160295442			160293220	160293320	160302237	160302347	-0.08400	0.00001	0.00015	excluded	K562	AQR
SE	COPA	ENSG00000122218.10	chr1	-	160276952	160277035			160276062	160276283	160278890	160278966	-0.07900	0.00000	0.00000	excluded	K562	AQR
SE	COPA	ENSG00000122218.10	chr1	-	160279831	160280048			160278890	160278966	160281657	160281842	-0.06100	0.00000	0.00008	excluded	K562	AQR
SE	COPA	ENSG00000122218.10	chr1	-	160305031	160305112			160302237	160302347	160309698	160309772	-0.05300	0.00000	0.00000	excluded	K562	PUS1
SE	COPA	ENSG00000122218.10	chr1	-	160268891	160269054			160267345	160267535	160275222	160275388	-0.09900	0.00053	0.01870	excluded	HepG2	SF3A3
SE	COPA	ENSG00000122218.10	chr1	-	160276952	160277035			160276131	160276283	160278890	160278966	-0.17400	0.00000	0.00000	excluded	HepG2	SF3A3
SE	COPA	ENSG00000122218.10	chr1	-	160279981	160280048			160278890	160278966	160281657	160281808	-0.10100	0.00001	0.00051	excluded	HepG2	SF3A3
SE	COPA	ENSG00000122218.10	chr1	-	160268891	160269054			160267345	160267535	160275222	160275388	-0.07700	0.00007	0.00567	excluded	HepG2	PCBP1
SE	COPA	ENSG00000122218.10	chr1	-	160276952	160277026			160276062	160276283	160278890	160278966	-0.07500	0.00085	0.01731	excluded	K562	U2AF2
SE	COPA	ENSG00000122218.10	chr1	-	160268634	160268781			160267345	160267535	160275222	160275361	-0.05200	0.00073	0.03336	excluded	HepG2	HNRNPU
A3SS	COPA	ENSG00000122218.10	chr1	-	160268891	160269102			160268891	160269054	160275222	160275388	0.06700	0.00001	0.00072	longer	HepG2	U2AF2
A3SS	COPA	ENSG00000122218.10	chr1	-	160305031	160305130			160305031	160305112	160309698	160309808	0.05700	0.00000	0.00000	longer	K562	AQR
A3SS	COPA	ENSG00000122218.10	chr1	-	160260281	160260525			160260281	160260476	160261124	160261353	0.06600	0.00000	0.00000	longer	K562	AQR
A3SS	COPA	ENSG00000122218.10	chr1	-	160265525	160265750			160265525	160265649	160265850	160265955	0.08000	0.00000	0.00000	longer	K562	AQR
A3SS	COPA	ENSG00000122218.10	chr1	-	160264273	160264430			160264273	160264383	160264557	160264647	0.08800	0.00000	0.00000	longer	K562	AQR
A3SS	COPA	ENSG00000122218.10	chr1	-	160261124	160261353			160261124	160261286	160261608	160261719	0.06500	0.00000	0.00000	longer	K562	AQR
A3SS	COPA	ENSG00000122218.10	chr1	-	160293167	160293388			160293167	160293320	160295332	160295442	0.13000	0.00000	0.00000	longer	K562	AQR
A3SS	COPA	ENSG00000122218.10	chr1	-	160275222	160275388			160275222	160275361	160275477	160275563	0.05700	0.00023	0.01171	longer	HepG2	U2AF1
MXE	COPA	ENSG00000122218.10	chr1	-	160295332	160295442	160302237	160302347	160293220	160293320	160303392	160303469	-0.13700	0.00010	0.00752	2included	K562	LIN28B
MXE	COPA	ENSG00000122218.10	chr1	-	160264273	160264383	160264557	160264647	160263175	160263253	160265525	160265649	0.08900	0.00694	0.07136	1included	K562	U2AF2
MXE	COPA	ENSG00000122218.10	chr1	-	160295332	160295442	160302237	160302347	160293220	160293320	160303392	160303469	-0.16100	0.00001	0.00064	2included	K562	HNRNPC
MXE	COPA	ENSG00000122218.10	chr1	-	160302237	160302347	160303392	160303469	160295332	160295442	160305031	160305112	0.08900	0.00000	0.00000	1included	K562	HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

COPA

General Information

Functions

Localization

Domains (AlphaFold: COPA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COPA is not avaliable on ENCORE database.

52 proteins are bound to COPA RNA:

eCLIP assay for COPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COPA is not available on ENCORE database.

119 RBPs can affect the gene expression of COPA :

The Knockdown/knockout RNA-Seq assay for COPA is not available on ENCORE database.

12 RBPs can affect the splicing of COPA :

The Knockdown/knockout RNA-Seq assay for COPA is not avaliable on ENCORE database.