CAPN12

General Information

Gene Name       : CAPN12
Gene ID             : ENSG00000182472.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CAPN12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CAPN12ENSG00000182472.81.961.841.90ENCSR000AEF
HepG2CAPN12ENSG00000182472.83.012.012.51ENCSR985KAT
K562CAPN12ENSG00000182472.83.372.262.81ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CAPN12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CAPN12 RNA is bound by 10 proteins.  







eCLIP assay for CAPN12 is not avaliable on ENCORE database.





10 proteins are bound to CAPN12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193922141539221518-3'-UTR,CDS,intron-Distal,intron-Proximal5.0684613.26805HepG2LSM11
chr193922144939221489-3'-UTR,intron-Distal5.554908.22692HepG2PABPN1
chr193922164439221663-3'-UTR,CDS,intron-Distal,intron-Proximal3.516107.88741HepG2PABPN1
chr193922148939221515-3'-UTR,CDS,intron-Distal,intron-Proximal5.219796.47877HepG2PABPN1
chr193922122439221262-3'-UTR,intron-Distal,intron-Proximal3.788057.55803HepG2PABPN1
chr193922163439221663-3'-UTR,CDS,intron-Distal,intron-Proximal3.046263.17639HepG2LSM11
chr193922097339221076-3'-UTR,intron-Distal,intron-Proximal4.1202514.79588HepG2PABPN1
chr193922120339221281-3'-UTR,intron-Distal,intron-Proximal5.273027.20398HepG2LSM11
chr193922128139221334-3'-UTR,intron-Distal,intron-Proximal4.684085.29820HepG2LSM11
chr193922160539221634-3'-UTR,CDS,intron-Distal3.133034.14144HepG2LSM11
chr193922182939221864-3'-UTR,CDS,intron-Distal,intron-Proximal3.797644.13746HepG2PPIG
chr193922160739221642-3'-UTR,CDS,intron-Distal5.482829.69440HepG2PABPN1
chr193922174639221837-3'-UTR,CDS,intron-Distal,intron-Proximal3.8944213.61101HepG2PABPN1
chr193922135639221380-3'-UTR,intron-Distal5.352109.10644HepG2PABPN1
chr193922138039221411-3'-UTR,intron-Distal4.6292112.40008HepG2PABPN1
chr193922141139221434-3'-UTR,intron-Distal4.109876.43352HepG2PABPN1
chr193922133439221402-3'-UTR,intron-Distal3.237766.45834HepG2LSM11
chr193922099739221067-3'-UTR,intron-Distal,intron-Proximal3.288634.14144HepG2LSM11
chr193922174539221805-3'-UTR,CDS,intron-Distal,intron-Proximal3.659954.51003HepG2PPIG
chr193922439739224472-5'-UTR,CDS,intron-Distal,intron-Proximal3.913804.25147HepG2LSM11
chr193922433739224410-5'-UTR,CDS,intron-Distal,intron-Proximal5.456437.06060HepG2PPIG
chr193922715439227198-CDS,intron-Distal,intron-Proximal4.671314.97857HepG2AQR
chr193922788739227985-CDS,intron-Distal3.239638.31208HepG2PPIG
chr193922497439225032-CDS,intron-Distal,intron-Proximal3.533273.51117HepG2LSM11
chr193922789139227932-CDS,intron-Distal4.313235.20041HepG2PRPF4
chr193922600839226094-CDS,intron-Distal,intron-Proximal4.4458412.18291HepG2PPIG
chr193923070539230753-CDS,intron-Distal4.043453.16051HepG2PPIG
chr193922604439226105-CDS,intron-Distal,intron-Proximal3.413714.63292HepG2PABPN1
chr193922674139226772-CDS,intron-Distal,intron-Proximal4.217413.49905HepG2PPIG
chr193922495839225031-CDS,intron-Distal,intron-Proximal3.436716.23940HepG2PPIG
chr193923384739233953-intron-Distal,intron-Proximal4.5250710.60129HepG2PRPF4
chr193923424839234332-intron-Distal4.755167.09127HepG2PRPF4
chr193922744839227533-intron-Distal4.5814816.34668HepG2PRPF4
chr193923446939234517-intron-Distal4.202264.10323HepG2PRPF4
chr193922724939227397-intron-Distal,intron-Proximal3.377903.25653K562CSTF2T
chr193922624239226308-intron-Distal,intron-Proximal4.5429510.72552HepG2DDX59
chr193924176239241856-intron-Distal4.060643.91585HepG2PRPF4
chr193922729039227384-intron-Distal,intron-Proximal4.242664.07596K562GTF2F1
chr193922743139227559-intron-Distal4.241254.48935K562CSTF2T
chr193922739339227448-intron-Distal5.7908711.85679HepG2PRPF4
chr193922723639227287-intron-Distal,intron-Proximal4.462956.48632HepG2PRPF4
chr193922737239227446-intron-Distal3.922715.35939K562DROSHA
chr193922728739227380-intron-Distal,intron-Proximal6.6188720.18297HepG2PRPF4
chr193922829539228335-intron-Distal,intron-Proximal4.115734.35952HepG2PRPF4
chr193922621639226327-intron-Distal,intron-Proximal4.820846.32074HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CAPN12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CAPN12 is not available on ENCORE database.

  • 130 RBPs can affect the levels of CAPN12.  








The Knockdown/knockout RNA-Seq assay for CAPN12 is not available on ENCORE database.





130 RBPs can affect the gene expression of CAPN12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CAPN12ENSG00000182472.449.99400158.85520-1.667902.869901.78170HepG2AATF
CAPN12ENSG00000182472.497.31920385.47400-1.9858030.9587029.44890HepG2ACO1
CAPN12ENSG00000182472.427.81600517.98880-4.2189025.8378024.40250HepG2AKAP1
CAPN12ENSG00000182472.4258.22000104.597601.303707.774706.36020HepG2BCLAF1
CAPN12ENSG00000182472.4355.2496050.949302.8016038.0365036.27910HepG2BOP1
CAPN12ENSG00000182472.4266.84050407.16520-0.609601.981401.31960HepG2CIRBP
CAPN12ENSG00000182472.4215.81200385.31400-0.836308.918907.85630HepG2CKAP4
CAPN12ENSG00000182472.4456.5775046.767003.2872023.1842021.43930HepG2CPSF6
CAPN12ENSG00000182472.4173.0095099.530200.797503.851602.64680HepG2YBX3
CAPN12ENSG00000182472.4946.86240296.742701.6738058.3885055.91140HepG2DAZAP1
CAPN12ENSG00000182472.4185.29510356.47320-0.9440010.690309.26380HepG2DDX19B
CAPN12ENSG00000182472.4317.41600496.10180-0.644302.630602.01910HepG2DDX3X
CAPN12ENSG00000182472.4318.1519097.702101.7032021.1380019.38800HepG2DNAJC21
CAPN12ENSG00000182472.4173.22150254.80290-0.556802.275301.43770HepG2EEF2
CAPN12ENSG00000182472.4112.13710212.40430-0.921504.961903.47840HepG2EFTUD2
CAPN12ENSG00000182472.4689.73630409.672800.751505.449504.63420HepG2EIF2S1
CAPN12ENSG00000182472.4148.65950259.87450-0.805803.216801.94800HepG2EIF2S2
CAPN12ENSG00000182472.4138.33300206.83600-0.580302.472101.61300HepG2EIF3D
CAPN12ENSG00000182472.4812.14280452.632200.843304.769603.93300HepG2EIF4A3
CAPN12ENSG00000182472.4664.40780280.470601.244102.532201.75110HepG2EIF4G2
CAPN12ENSG00000182472.459.93150346.09940-2.529809.736908.41100HepG2FIP1L1
CAPN12ENSG00000182472.4204.7969098.523501.055603.888202.39990HepG2FKBP4
CAPN12ENSG00000182472.4654.9939046.862203.8049030.4479027.55130HepG2FTO
CAPN12ENSG00000182472.4552.78120329.136700.747906.793305.59360HepG2FUBP3
CAPN12ENSG00000182472.495.48510194.51620-1.026504.799103.35510HepG2FUS
CAPN12ENSG00000182472.4870.97680423.770901.039206.856505.82900HepG2G3BP1
CAPN12ENSG00000182472.4659.72970450.104200.551503.462902.45950HepG2G3BP2
CAPN12ENSG00000182472.465.13390184.15850-1.499509.697508.07630HepG2GEMIN5
CAPN12ENSG00000182472.4284.1414052.994302.4226022.7507021.10450HepG2GPKOW
CAPN12ENSG00000182472.4353.10300109.731201.6860015.9662014.43690HepG2HNRNPC
CAPN12ENSG00000182472.4289.3125052.338802.4666032.2427030.24810HepG2HNRNPF
CAPN12ENSG00000182472.4739.91760429.494200.784607.665206.54690HepG2HNRNPK
CAPN12ENSG00000182472.4384.2636050.575302.9255039.3180037.37640HepG2HNRNPLL
CAPN12ENSG00000182472.4346.7479051.536002.7501040.2101037.96910HepG2IGF2BP1
CAPN12ENSG00000182472.4848.31330430.694800.977809.742708.56240HepG2IGF2BP2
CAPN12ENSG00000182472.4205.24290404.42650-0.978503.407602.31470HepG2IGF2BP3
CAPN12ENSG00000182472.4191.98150111.342300.785902.387901.69980HepG2ILF2
CAPN12ENSG00000182472.4430.94900217.486600.986502.825501.48840HepG2ILF3
CAPN12ENSG00000182472.4697.82650433.315900.687302.577301.61440HepG2KHSRP
CAPN12ENSG00000182472.4542.18970352.324100.621807.338105.73050HepG2KIF1C
CAPN12ENSG00000182472.484.73210160.68110-0.923204.209002.80330HepG2LARP7
CAPN12ENSG00000182472.4146.49520459.67100-1.649708.336407.29180HepG2MATR3
CAPN12ENSG00000182472.457.00760216.46740-1.924909.399007.58490HepG2METAP2
CAPN12ENSG00000182472.4249.2998051.623402.2717015.8612013.55500HepG2MTPAP
CAPN12ENSG00000182472.4392.75210235.085800.740303.141501.84400HepG2NAA15
CAPN12ENSG00000182472.4315.64620470.45710-0.575802.009201.46480HepG2NCBP2
CAPN12ENSG00000182472.4231.34310137.318900.752402.905501.41910HepG2NOLC1
CAPN12ENSG00000182472.4342.3149044.859002.9318015.2005013.60590HepG2NSUN2
CAPN12ENSG00000182472.4796.06890418.780900.926609.885208.54040HepG2PABPC4
CAPN12ENSG00000182472.4555.93060409.890000.439603.956803.25750HepG2PCBP1
CAPN12ENSG00000182472.4255.3959097.221101.3933010.416509.03230HepG2PPIL4
CAPN12ENSG00000182472.4354.98710140.887601.3331016.3088014.68730HepG2PRPF4
CAPN12ENSG00000182472.477.31400193.53500-1.323806.852605.01750HepG2PRPF6
CAPN12ENSG00000182472.4165.00410417.12040-1.3380012.8263011.82070HepG2PTBP1
CAPN12ENSG00000182472.4641.46990280.901601.1912017.2300015.91610HepG2PUF60
CAPN12ENSG00000182472.499.12990298.20400-1.5889018.9681017.69680HepG2PUM1
CAPN12ENSG00000182472.4282.22710392.61910-0.476303.513802.83830HepG2PUS1
CAPN12ENSG00000182472.4821.45480451.662200.862803.548602.85340HepG2QKI
CAPN12ENSG00000182472.449.50910177.61890-1.843008.740107.53240HepG2RAVER1
CAPN12ENSG00000182472.4243.23880131.170100.890804.472302.22290HepG2RBM14
CAPN12ENSG00000182472.4251.11020406.33160-0.694305.089303.96970HepG2RBM15
CAPN12ENSG00000182472.4107.67940295.52810-1.4566014.6862013.68370HepG2RBM22
CAPN12ENSG00000182472.4728.52930409.946300.8295010.353509.10890HepG2RBM25
CAPN12ENSG00000182472.4208.31120464.18010-1.1559010.834609.89520HepG2NELFE
CAPN12ENSG00000182472.4222.3661056.422401.9785015.1070013.75210HepG2RPLP0
CAPN12ENSG00000182472.4260.24140174.584200.575802.190801.34840HepG2RPS10
CAPN12ENSG00000182472.452.86270201.26840-1.9288015.4714014.18170HepG2RPS19
CAPN12ENSG00000182472.4645.22190224.427901.523407.101305.83030HepG2RPS3A
CAPN12ENSG00000182472.448.4646090.29040-0.897602.288901.56700HepG2RRP9
CAPN12ENSG00000182472.493.27220193.38360-1.051904.574602.59640HepG2RTF1
CAPN12ENSG00000182472.4218.9767097.065301.173708.574207.53250HepG2SAFB2
CAPN12ENSG00000182472.4109.99220201.99170-0.876904.473203.29200HepG2SERBP1
CAPN12ENSG00000182472.4129.03260575.23220-2.1564028.9378026.70790HepG2SF3A3
CAPN12ENSG00000182472.4184.7526050.048101.8841012.4034011.01250HepG2SF3B1
CAPN12ENSG00000182472.4249.77860434.20090-0.797704.474703.75000HepG2SF3B4
CAPN12ENSG00000182472.4539.82910269.370701.0028015.9609014.52970HepG2SLBP
CAPN12ENSG00000182472.497.14690181.42220-0.901104.009502.83940HepG2SMNDC1
CAPN12ENSG00000182472.4154.6727055.691401.473604.623303.60250HepG2SNRNP70
CAPN12ENSG00000182472.4157.28440333.78980-1.0856010.567309.75880HepG2SRFBP1
CAPN12ENSG00000182472.462.27220453.24250-2.8636031.6001030.38350HepG2SRSF1
CAPN12ENSG00000182472.4299.1764051.430502.5402034.7425032.84160HepG2SRSF7
CAPN12ENSG00000182472.4251.94470368.76330-0.549602.050901.56120HepG2SRSF9
CAPN12ENSG00000182472.4507.86220289.811600.8092010.012809.15380HepG2SSB
CAPN12ENSG00000182472.4304.27480530.23300-0.801303.205701.83160HepG2SSRP1
CAPN12ENSG00000182472.4367.02090230.982800.668003.267501.92730HepG2STAU1
CAPN12ENSG00000182472.4197.01850315.42760-0.679004.238703.49800HepG2SUCLG1
CAPN12ENSG00000182472.4341.71910536.57960-0.651002.656901.35890HepG2SUGP2
CAPN12ENSG00000182472.4414.47380233.526200.827606.492705.09020HepG2SUPT6H
CAPN12ENSG00000182472.4617.58790117.832502.3898033.0312031.19230HepG2SUPV3L1
CAPN12ENSG00000182472.4146.4078049.347601.568807.877706.73680HepG2TARDBP
CAPN12ENSG00000182472.4491.48950374.325600.392802.707801.87950HepG2TIA1
CAPN12ENSG00000182472.4323.44100105.865801.6112018.4583017.37740HepG2TIAL1
CAPN12ENSG00000182472.4264.42530106.868701.3069010.071809.09870HepG2TRIM56
CAPN12ENSG00000182472.4431.03400274.452800.651103.119202.18670HepG2TUFM
CAPN12ENSG00000182472.4145.33140295.94820-1.026002.941502.29470HepG2U2AF1
CAPN12ENSG00000182472.4676.71760510.143600.407603.891603.08440HepG2UPF1
CAPN12ENSG00000182472.4365.61670107.867901.7610013.2078010.93420HepG2UPF2
CAPN12ENSG00000182472.4117.18560492.52270-2.0714038.2591036.40720HepG2UTP3
CAPN12ENSG00000182472.4654.87000201.049001.703609.288107.31040HepG2XPO5
CAPN12ENSG00000182472.469.89710195.39160-1.483108.731506.95710HepG2XRCC6
CAPN12ENSG00000182472.4301.94410115.993501.380109.263007.95840HepG2XRN2
CAPN12ENSG00000182472.4194.10060139.031400.481302.089801.49350HepG2ZC3H8
CAPN12ENSG00000182472.4421.70710561.05950-0.411903.803703.19000HepG2ZNF622
CAPN12ENSG00000182472.4328.76720177.562100.888605.463803.56960HepG2ZRANB2
CAPN12ENSG00000182472.4474.49850221.070701.101807.451106.58500K562AGGF1
CAPN12ENSG00000182472.4432.08790242.947200.830607.737505.86700K562AKAP8
CAPN12ENSG00000182472.4564.48110230.040001.2949011.335209.88790K562AKAP8L
CAPN12ENSG00000182472.499.00360245.11870-1.307909.042106.71710K562APOBEC3C
CAPN12ENSG00000182472.482.54070226.91970-1.459008.323007.39410K562AQR
CAPN12ENSG00000182472.4391.65330264.172500.568004.264802.76030K562CCDC124
CAPN12ENSG00000182472.4156.10260213.26670-0.450201.938701.37500K562DDX47
CAPN12ENSG00000182472.4193.68590277.81270-0.520403.034202.05180K562EIF4G2
CAPN12ENSG00000182472.433.06040180.38610-2.4479020.6924019.15050K562FXR1
CAPN12ENSG00000182472.432.5268076.06760-1.225703.320802.53290K562G3BP2
CAPN12ENSG00000182472.4100.41340156.32600-0.638602.511801.42970K562GLRX3
CAPN12ENSG00000182472.435.78580112.37410-1.650906.918206.01440K562HNRNPC
CAPN12ENSG00000182472.4119.50440185.61580-0.635302.913901.99710K562HNRNPU
CAPN12ENSG00000182472.4433.50500244.109300.828407.501905.97930K562KIF1C
CAPN12ENSG00000182472.4344.91370233.689400.561503.324802.11520K562MAK16
CAPN12ENSG00000182472.4107.72320164.35910-0.609502.403101.64890K562MTPAP
CAPN12ENSG00000182472.4194.62090303.92640-0.643103.839502.05730K562NOL12
CAPN12ENSG00000182472.4165.25300285.46810-0.788704.935003.09590K562PNPT1
CAPN12ENSG00000182472.437.3821090.92120-1.282303.664202.73570K562POLR2G
CAPN12ENSG00000182472.430.2287081.72320-1.434803.780902.90450K562PRPF8
CAPN12ENSG00000182472.4239.04050100.757001.246308.130706.41160K562PSIP1
CAPN12ENSG00000182472.459.10890112.27420-0.925603.615502.86830K562PTBP1
CAPN12ENSG00000182472.4133.72420303.09880-1.180509.216307.71000K562PUF60
CAPN12ENSG00000182472.4209.67840322.50580-0.621104.412403.03840K562PUM1
CAPN12ENSG00000182472.4233.65210315.87680-0.435002.366701.47740K562PUM2
CAPN12ENSG00000182472.4327.73330228.094500.522802.682002.14480K562PUS1
CAPN12ENSG00000182472.4413.91220222.278500.896909.135908.08250K562RBM15
CAPN12ENSG00000182472.4366.46010175.589501.061303.921302.00290K562RBM39
CAPN12ENSG00000182472.4145.3399091.936700.660602.361801.44980K562RCC2
CAPN12ENSG00000182472.436.7598080.98010-1.139403.138001.98310K562SAFB
CAPN12ENSG00000182472.4278.74500130.481801.095003.300501.95380K562SF1
CAPN12ENSG00000182472.4300.87320149.930901.004803.177301.82510K562SNRNP200
CAPN12ENSG00000182472.4197.38720103.953200.925005.189403.67050K562SRSF5
CAPN12ENSG00000182472.438.1019091.18190-1.258904.153203.14120K562SYNCRIP
CAPN12ENSG00000182472.4181.7502096.910300.907104.080202.92660K562TIAL1
CAPN12ENSG00000182472.4184.45830105.448000.806703.782502.47190K562TRA2A
CAPN12ENSG00000182472.4418.10890231.306500.854004.180502.47790K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CAPN12 is not available on ENCORE database.





5 RBPs can affect the splicing of CAPN12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCAPN12ENSG00000182472.4chr19-3922495839225176392249583922502939225452392255100.375000.001180.07639longerHepG2SF3B4
RICAPN12ENSG00000182472.4chr19-3922600939226184392260093922606939226141392261840.513000.003010.05422includedHepG2KHSRP
RICAPN12ENSG00000182472.4chr19-392249583922551039224958392250293922545239225510-0.383000.000240.01537excludedHepG2HNRNPC
RICAPN12ENSG00000182472.4chr19-3922495839225510392249583922502939225452392255100.395000.000390.00422includedHepG2SF3B4
RICAPN12ENSG00000182472.4chr19-392249583922551039224958392250293922545239225510-0.233000.005750.07623excludedHepG2FUBP3
RICAPN12ENSG00000182472.4chr19-392249583922551039224958392250293922545239225510-0.486000.007180.08817excludedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CAPN12 is not avaliable on ENCORE database.