VAMP8

General Information

Gene Name       : VAMP8
Gene ID             : ENSG00000118640.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VAMP8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VAMP8ENSG00000118640.10186.59180.77183.68ENCSR000AEF
HepG2VAMP8ENSG00000118640.1097.20101.0199.11ENCSR985KAT
K562VAMP8ENSG00000118640.10217.87202.68210.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VAMP8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VAMP8 RNA is bound by 13 proteins.  







eCLIP assay for VAMP8 is not avaliable on ENCORE database.





13 proteins are bound to VAMP8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr28580877385808838+3'-UTR,CDS3.8930111.11813K562LIN28B
chr28580872285808759+3'-UTR,CDS3.220374.02291HepG2GRWD1
chr28580905585809096+3'-UTR5.313759.39648K562PABPC4
chr28580613185806166+3'-UTR,CDS,intron-Proximal3.6566212.20332K562DDX3X
chr28580615985806252+3'-UTR,CDS3.081847.86992K562DDX6
chr28580888485808935+3'-UTR3.7847514.26416HepG2LARP4
chr28580883385808884+3'-UTR,CDS4.6510511.09436K562PABPC4
chr28580616585806278+3'-UTR,CDS4.072859.17402K562UCHL5
chr28580898685809059+3'-UTR3.049183.26079K562UPF1
chr28580880685808839+3'-UTR,CDS3.218629.60340K562YBX3
chr28580887685808985+3'-UTR3.148787.57295HepG2DDX55
chr28580872585808741+3'-UTR,CDS3.664073.19539K562YBX3
chr28580893585808972+3'-UTR4.7875715.43881HepG2LARP4
chr28580877285808838+3'-UTR,CDS4.331444.01886HepG2LIN28B
chr28580889385809004+3'-UTR5.005776.92572HepG2AKAP1
chr28580889285808976+3'-UTR3.9310811.75795K562PABPC4
chr28580884585808884+3'-UTR4.2785915.34321HepG2LARP4
chr28580901485809101+3'-UTR4.228943.07786HepG2UPF1
chr28580879485808887+3'-UTR,CDS3.314109.41693K562DDX55
chr28580906185809089+3'-UTR3.955419.36557HepG2LARP4
chr28580880185808845+3'-UTR,CDS4.6442122.29993HepG2LARP4
chr28580474085804773+5'-UTR,CDS,intron-Distal,intron-Proximal4.4920914.20952K562DDX3X
chr28580474085804771+5'-UTR,CDS,intron-Distal3.283794.24070HepG2GRWD1
chr28580470185804740+5'-UTR,intron-Distal5.1483610.09716K562DDX3X
chr28580620685806257+CDS4.0046514.02761HepG2LARP4
chr28580620885806244+CDS3.753853.15232HepG2LIN28B
chr28580620885806280+CDS3.660454.86632HepG2G3BP1
chr28580864885808694+intron-Proximal3.996753.98427HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VAMP8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VAMP8 is not available on ENCORE database.

  • 132 RBPs can affect the levels of VAMP8.  








The Knockdown/knockout RNA-Seq assay for VAMP8 is not available on ENCORE database.





132 RBPs can affect the gene expression of VAMP8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VAMP8ENSG00000118640.6631.28840840.23770-0.412502.874001.85860HepG2ADAR
VAMP8ENSG00000118640.61700.923802701.31670-0.667306.772905.98160HepG2AKAP1
VAMP8ENSG00000118640.61449.134401072.555100.434002.729501.69740HepG2AKAP8
VAMP8ENSG00000118640.61017.84730829.673000.294802.790802.02110HepG2AKAP8L
VAMP8ENSG00000118640.63239.662402235.181900.535405.828804.71260HepG2ASCC1
VAMP8ENSG00000118640.61059.00170816.125000.375702.243001.40370HepG2BCCIP
VAMP8ENSG00000118640.61050.08650709.175500.566204.555403.42750HepG2BCLAF1
VAMP8ENSG00000118640.6779.10470396.968300.9727012.5266011.37440HepG2BOP1
VAMP8ENSG00000118640.6977.92320598.237200.708909.659908.34600HepG2CALR
VAMP8ENSG00000118640.63001.073802123.554300.498905.308204.25470HepG2CIRBP
VAMP8ENSG00000118640.61040.14590861.640400.271502.293401.36800HepG2YBX3
VAMP8ENSG00000118640.6796.136901369.61980-0.7827015.5073014.22970HepG2CELF1
VAMP8ENSG00000118640.61219.59370763.743800.6751015.0425013.44010HepG2DDX19B
VAMP8ENSG00000118640.61651.77310954.050500.7918012.2359010.92590HepG2DDX21
VAMP8ENSG00000118640.63349.741202587.805400.372203.031102.38040HepG2DDX3X
VAMP8ENSG00000118640.61234.96480802.406500.622005.301404.27330HepG2DDX55
VAMP8ENSG00000118640.61030.47790729.353000.498504.328603.07430HepG2DDX5
VAMP8ENSG00000118640.61711.918502222.62890-0.376702.540401.94740HepG2DDX6
VAMP8ENSG00000118640.61091.86290816.051600.420003.618302.50490HepG2DHX30
VAMP8ENSG00000118640.61192.41150790.066200.593709.686608.57730HepG2DKC1
VAMP8ENSG00000118640.61178.22850878.377200.423602.465801.42670HepG2AGO1
VAMP8ENSG00000118640.6549.54030733.38450-0.416303.290002.00840HepG2EIF2S2
VAMP8ENSG00000118640.61514.402502361.81940-0.641106.258505.30260HepG2EIF4A3
VAMP8ENSG00000118640.6825.741302299.24240-1.4774022.5185020.70260HepG2EIF4B
VAMP8ENSG00000118640.61041.056701452.85820-0.480807.053105.82800HepG2EIF4G1
VAMP8ENSG00000118640.6832.775301430.26140-0.7803012.2487010.65410HepG2FUBP3
VAMP8ENSG00000118640.61265.646002382.46910-0.9126010.100908.85780HepG2FXR1
VAMP8ENSG00000118640.61545.905202346.22780-0.601906.837205.42540HepG2G3BP2
VAMP8ENSG00000118640.6673.58000413.149600.705103.687902.95770HepG2GPKOW
VAMP8ENSG00000118640.61176.02280854.205600.461204.280903.50120HepG2HNRNPA1
VAMP8ENSG00000118640.61190.25730950.129400.325002.304701.66660HepG2HNRNPC
VAMP8ENSG00000118640.61119.89840922.293100.280002.544301.85580HepG2HNRNPF
VAMP8ENSG00000118640.61317.704602237.56270-0.7639010.844609.54180HepG2HNRNPK
VAMP8ENSG00000118640.6869.91570394.274401.1416015.5089014.18520HepG2HNRNPLL
VAMP8ENSG00000118640.6730.43610943.84900-0.369804.101203.37470HepG2HNRNPU
VAMP8ENSG00000118640.61347.37080908.190300.569007.368106.23940HepG2IGF2BP1
VAMP8ENSG00000118640.61782.382802246.87410-0.334102.135701.53310HepG2IGF2BP2
VAMP8ENSG00000118640.61094.591702108.21170-0.945603.822102.66420HepG2IGF2BP3
VAMP8ENSG00000118640.61387.381202259.79370-0.703806.381904.79490HepG2KHSRP
VAMP8ENSG00000118640.61127.960002383.29860-1.0792017.3703015.80060HepG2MAGOH
VAMP8ENSG00000118640.61435.665502396.72020-0.739308.333107.28930HepG2MATR3
VAMP8ENSG00000118640.61266.05750790.042400.680208.779107.41460HepG2MSI2
VAMP8ENSG00000118640.6595.10290402.061900.565602.686501.73450HepG2MTPAP
VAMP8ENSG00000118640.61880.715802453.24350-0.383402.882502.23700HepG2NCBP2
VAMP8ENSG00000118640.6584.42800349.584100.741306.383305.27620HepG2NSUN2
VAMP8ENSG00000118640.61510.414502185.08180-0.532705.082404.11560HepG2PABPC4
VAMP8ENSG00000118640.6753.30110934.26940-0.310602.914202.04670HepG2PARN
VAMP8ENSG00000118640.6915.277102309.96120-1.3356060.5551058.39800HepG2PCBP1
VAMP8ENSG00000118640.6675.464901004.67400-0.572803.432102.27790HepG2PCBP2
VAMP8ENSG00000118640.6676.228901056.10670-0.643204.073102.60910HepG2PRPF6
VAMP8ENSG00000118640.6909.84030619.068200.555404.545303.53750HepG2PRPF8
VAMP8ENSG00000118640.61152.261602350.51090-1.0285036.7016035.17070HepG2PTBP1
VAMP8ENSG00000118640.62212.222001393.846500.6663010.972009.89160HepG2PUF60
VAMP8ENSG00000118640.61112.802101479.70380-0.411103.608102.94880HepG2PUM1
VAMP8ENSG00000118640.61214.047801478.57690-0.284402.236501.63080HepG2PUM2
VAMP8ENSG00000118640.61056.60500841.131600.328903.688302.99880HepG2PUS1
VAMP8ENSG00000118640.61426.474802545.57820-0.8355020.9394019.45230HepG2QKI
VAMP8ENSG00000118640.61831.764701190.489900.6216011.9144010.99450HepG2RBM22
VAMP8ENSG00000118640.61461.132902310.30730-0.6610011.004709.71990HepG2RBM25
VAMP8ENSG00000118640.6695.891901063.13320-0.611406.196704.70290HepG2RBM27
VAMP8ENSG00000118640.6812.783002615.86060-1.6863090.7110088.72960HepG2NELFE
VAMP8ENSG00000118640.61021.516502436.37750-1.2540054.6794052.68440HepG2RECQL
VAMP8ENSG00000118640.62021.29190993.611901.0244019.9290018.43700HepG2RPLP0
VAMP8ENSG00000118640.6889.80930637.244600.481503.710502.61910HepG2SERBP1
VAMP8ENSG00000118640.61243.26250870.314200.514402.014401.43720HepG2SF3A3
VAMP8ENSG00000118640.6529.79870390.266100.440902.639301.95060HepG2SF3B1
VAMP8ENSG00000118640.61173.369002447.11530-1.0604040.5496038.79340HepG2SF3B4
VAMP8ENSG00000118640.6802.21490434.235000.885406.032104.87230HepG2SNRNP70
VAMP8ENSG00000118640.62135.711301344.619000.6674018.6360017.63930HepG2SRFBP1
VAMP8ENSG00000118640.61140.922502554.28710-1.1627051.5989050.12300HepG2SRSF1
VAMP8ENSG00000118640.61167.71240906.140100.365804.062303.24400HepG2SRSF7
VAMP8ENSG00000118640.61374.770902078.07320-0.5961014.6979013.60600HepG2SRSF9
VAMP8ENSG00000118640.61575.197401167.455500.432107.253106.49860HepG2SSB
VAMP8ENSG00000118640.61083.439701565.16670-0.530707.465306.52380HepG2SUCLG1
VAMP8ENSG00000118640.6902.40340659.148800.453103.647102.57820HepG2SUPT6H
VAMP8ENSG00000118640.61494.85340798.805400.9040011.003209.80370HepG2SUPV3L1
VAMP8ENSG00000118640.61221.450902295.97220-0.9105026.0047024.51820HepG2TAF15
VAMP8ENSG00000118640.6725.25800535.424800.437702.582501.61640HepG2TFIP11
VAMP8ENSG00000118640.61381.738802109.60150-0.610509.924308.36040HepG2TIA1
VAMP8ENSG00000118640.62129.51460917.187001.2151036.7138035.27300HepG2TIAL1
VAMP8ENSG00000118640.6558.26110973.61690-0.802406.045103.91880HepG2TRA2A
VAMP8ENSG00000118640.61336.54480771.834300.7920019.2161017.69640HepG2UPF1
VAMP8ENSG00000118640.6558.67720745.17770-0.415603.985703.28610HepG2UTP3
VAMP8ENSG00000118640.61346.761101008.281000.417502.373801.36750HepG2XPO5
VAMP8ENSG00000118640.6670.84230953.52350-0.507302.773901.50510HepG2XRCC5
VAMP8ENSG00000118640.6749.278801066.20880-0.508902.967401.86800HepG2XRCC6
VAMP8ENSG00000118640.61117.11080786.335700.506504.184303.29940HepG2XRN2
VAMP8ENSG00000118640.6824.83030649.310300.345103.562002.81500HepG2ZC3H8
VAMP8ENSG00000118640.61668.77830848.871800.975108.042607.23650HepG2ZNF622
VAMP8ENSG00000118640.6554.57790968.78290-0.804806.784804.64020HepG2ZRANB2
VAMP8ENSG00000118640.61744.136201284.298400.441407.378406.51690K562AGGF1
VAMP8ENSG00000118640.62206.154501336.371600.7231011.5891010.12450K562AKAP8L
VAMP8ENSG00000118640.6870.493601987.26480-1.1909014.5920013.39250K562AQR
VAMP8ENSG00000118640.6545.47860811.65530-0.573304.747803.28540K562CCAR1
VAMP8ENSG00000118640.61712.992103257.73800-0.9274025.6104023.10160K562CELF1
VAMP8ENSG00000118640.61055.334601343.68010-0.348503.755302.34100K562DDX21
VAMP8ENSG00000118640.61004.191801690.16200-0.7511018.2391016.69920K562DDX47
VAMP8ENSG00000118640.6623.86360908.65760-0.542504.529902.75880K562DHX30
VAMP8ENSG00000118640.6643.37660872.79990-0.440003.328601.84680K562DNAJC21
VAMP8ENSG00000118640.6536.35830925.16470-0.786504.484802.22290K562DNAJC2
VAMP8ENSG00000118640.62117.529201509.862800.487908.454507.30090K562EIF2S2
VAMP8ENSG00000118640.6339.77630825.58960-1.2808011.087809.06370K562EIF3A
VAMP8ENSG00000118640.6834.168301219.51050-0.547907.929806.58850K562EIF3G
VAMP8ENSG00000118640.6665.593301066.80220-0.680608.178506.76930K562EIF4A3
VAMP8ENSG00000118640.6461.30340886.03930-0.941705.326202.51780K562EIF4G1
VAMP8ENSG00000118640.61886.514802649.35260-0.489909.228107.55130K562EIF4G2
VAMP8ENSG00000118640.61641.003301109.454500.564606.676205.31280K562FIP1L1
VAMP8ENSG00000118640.6933.573501260.14660-0.432803.260802.01980K562FKBP4
VAMP8ENSG00000118640.6754.955601196.45550-0.664303.934303.05580K562G3BP2
VAMP8ENSG00000118640.6886.682401269.66250-0.518004.295902.49300K562GEMIN5
VAMP8ENSG00000118640.6968.704701291.12840-0.414504.856703.36390K562GLRX3
VAMP8ENSG00000118640.6831.233301805.88070-1.1194027.1262024.38240K562HNRNPA1
VAMP8ENSG00000118640.6865.993501451.01710-0.7446011.3904010.24950K562HNRNPC
VAMP8ENSG00000118640.6896.617901295.87410-0.531405.734004.00620K562HNRNPF
VAMP8ENSG00000118640.61596.25970912.626500.806509.650607.69470K562HNRNPM
VAMP8ENSG00000118640.61304.932601999.90530-0.6160011.741909.92690K562HNRNPU
VAMP8ENSG00000118640.62021.694301504.066600.426604.173903.20330K562HSPD1
VAMP8ENSG00000118640.61115.801801722.61420-0.626508.755607.21550K562MAGOH
VAMP8ENSG00000118640.61325.189601719.03390-0.375403.909902.79850K562MATR3
VAMP8ENSG00000118640.61913.693401588.766200.268402.300801.48490K562MBNL1
VAMP8ENSG00000118640.63515.708902823.920200.316002.491801.42260K562MSI2
VAMP8ENSG00000118640.6957.079201357.46040-0.504208.392607.05530K562MTPAP
VAMP8ENSG00000118640.61686.294201113.610300.598504.740003.48740K562NAA15
VAMP8ENSG00000118640.61241.276901684.11590-0.440205.203603.28970K562PCBP1
VAMP8ENSG00000118640.6857.079401369.73130-0.676406.297305.03970K562PCBP3
VAMP8ENSG00000118640.62211.273402722.30030-0.299903.517601.90650K562PNPT1
VAMP8ENSG00000118640.6728.877001050.67860-0.527603.243402.37150K562POLR2G
VAMP8ENSG00000118640.61989.673401259.571900.659508.316606.71280K562PPIG
VAMP8ENSG00000118640.62060.810501673.669600.300102.838402.16660K562PTBP1
VAMP8ENSG00000118640.62221.861702890.62260-0.379603.940902.97090K562PUF60
VAMP8ENSG00000118640.62562.639003074.78050-0.262902.667701.62290K562PUM1
VAMP8ENSG00000118640.62838.589801325.307201.0987010.214509.21620K562PUS1
VAMP8ENSG00000118640.61943.774901291.317800.5899010.574509.43960K562RBM15
VAMP8ENSG00000118640.61398.724301908.15340-0.448105.223203.03000K562RBM17
VAMP8ENSG00000118640.6692.136401187.16550-0.7784011.668409.60180K562RCC2
VAMP8ENSG00000118640.6938.133801688.59560-0.8480012.4508010.13850K562NELFE
VAMP8ENSG00000118640.6861.565401201.00470-0.479207.765405.23610K562RPS10
VAMP8ENSG00000118640.6759.911901255.37260-0.724206.790205.49840K562RPS19
VAMP8ENSG00000118640.6934.261801521.58130-0.703703.669301.83570K562RPS3A
VAMP8ENSG00000118640.6886.246201263.22280-0.511303.686601.56280K562SAFB2
VAMP8ENSG00000118640.6677.57700936.02950-0.466204.122102.79140K562SAFB
VAMP8ENSG00000118640.6646.81580967.81300-0.581405.496003.44690K562SDAD1
VAMP8ENSG00000118640.6570.31280757.46710-0.409402.307401.42770K562SF3B1
VAMP8ENSG00000118640.61004.641101243.65760-0.307902.773301.91720K562SF3B4
VAMP8ENSG00000118640.6628.09860893.93890-0.509204.239902.64840K562SLBP
VAMP8ENSG00000118640.6926.964901249.29370-0.430504.851202.51750K562SLTM
VAMP8ENSG00000118640.6821.541101125.38530-0.454004.026402.71640K562SRFBP1
VAMP8ENSG00000118640.61088.094501524.78920-0.486809.200807.60410K562SRPK2
VAMP8ENSG00000118640.6773.055901195.98270-0.629605.570403.36070K562SRSF9
VAMP8ENSG00000118640.6759.084901257.91570-0.7287013.7902011.03290K562SSB
VAMP8ENSG00000118640.6749.213301193.31590-0.671506.285004.70810K562SUPV3L1
VAMP8ENSG00000118640.6863.815801053.79180-0.286802.022401.32060K562SYNCRIP
VAMP8ENSG00000118640.61228.212601660.47810-0.435003.905303.05790K562TARDBP
VAMP8ENSG00000118640.61206.712501601.75440-0.408604.350503.28900K562TIA1
VAMP8ENSG00000118640.6659.457901251.34560-0.9241011.987409.92220K562TIAL1
VAMP8ENSG00000118640.6918.883201329.56340-0.533005.572304.11780K562TRIM56
VAMP8ENSG00000118640.6599.20340995.81030-0.732807.170804.39550K562TRNAU1AP
VAMP8ENSG00000118640.6993.753101197.42000-0.269002.150701.44260K562U2AF2
VAMP8ENSG00000118640.61514.433501916.87010-0.340003.302201.45540K562UPF2
VAMP8ENSG00000118640.61039.560901368.38000-0.396503.891802.84680K562WDR3
VAMP8ENSG00000118640.6796.182701422.99270-0.8378022.7994020.72920K562WDR43
VAMP8ENSG00000118640.6972.640701285.91600-0.402802.976901.70740K562XRN2
VAMP8ENSG00000118640.61635.772702238.97640-0.452903.583402.57710K562ZC3H8
VAMP8ENSG00000118640.6817.975601120.64950-0.454204.149001.93090K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VAMP8 is not available on ENCORE database.





4 RBPs can affect the splicing of VAMP8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVAMP8ENSG00000118640.6chr2+858061318580618085804613858047728580869885809120-0.057000.001220.08463excludedHepG2TBRG4
SEVAMP8ENSG00000118640.6chr2+858061318580618085804613858047728580869885809120-0.061000.000410.03018excludedHepG2NCBP2
SEVAMP8ENSG00000118640.6chr2+858061318580618085804613858047728580869885809120-0.089000.000000.00015excludedHepG2SRSF1
SEVAMP8ENSG00000118640.6chr2+858061318580618585804715858047728580869885809120-0.071000.000270.01363excludedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VAMP8 is not avaliable on ENCORE database.