PDXK

General Information

Gene Name : PDXK
Gene ID : ENSG00000160209.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDXK)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDXK	ENSG00000160209.18	15.36	36.12	25.74	ENCSR000AEF
HepG2	PDXK	ENSG00000160209.18	127.95	81.30	104.62	ENCSR985KAT
K562	PDXK	ENSG00000160209.18	61.29	54.20	57.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDXK is not avaliable on ENCORE database.

Proteins bound to RNA

PDXK RNA is bound by 48 proteins.

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eCLIP assay for PDXK is not avaliable on ENCORE database.

48 proteins are bound to PDXK RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	45180079	45180126	+	3'-UTR	3.87038	79.86303	K562	UPF1
chr21	45180071	45180079	+	3'-UTR	3.82296	57.64294	K562	UPF1
chr21	45177105	45177273	+	3'-UTR	5.00856	50.90528	K562	UPF1
chr21	45177970	45178034	+	3'-UTR	6.10289	49.64214	K562	UPF1
chr21	45177890	45177924	+	3'-UTR	4.33409	45.73035	K562	UPF1
chr21	45139127	45139196	+	5'-UTR,CDS	4.88064	38.14323	HepG2	DDX3X
chr21	45164108	45164172	+	intron-Distal	3.98517	36.16694	HepG2	EFTUD2
chr21	45139042	45139127	+	5'-UTR	3.81234	34.48649	HepG2	DDX3X
chr21	45171989	45172030	+	intron-Distal	5.97719	31.83983	K562	EIF4G2
chr21	45176491	45176570	+	3'-UTR	3.80880	30.25344	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 295 entries

eCLIP assay for PDXK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PDXK is not available on ENCORE database.
109 RBPs can affect the levels of PDXK.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDXK is not available on ENCORE database.

109 RBPs can affect the gene expression of PDXK :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDXK	ENSG00000160209.14	1633.82050	3401.38800	-1.05790	36.44060	34.70370	HepG2	TAF15
PDXK	ENSG00000160209.14	2138.43110	3783.87150	-0.82330	33.51260	32.26590	HepG2	SRSF1
PDXK	ENSG00000160209.14	1948.67760	2928.02440	-0.58740	20.15570	18.85310	HepG2	PUM1
PDXK	ENSG00000160209.14	2132.65910	3446.45050	-0.69250	18.25190	17.15660	HepG2	RBM22
PDXK	ENSG00000160209.14	2565.96480	3875.11490	-0.59470	16.72970	15.61490	HepG2	NELFE
PDXK	ENSG00000160209.14	679.16390	1455.56650	-1.09970	16.33470	14.60100	HepG2	PRPF8
PDXK	ENSG00000160209.14	1811.57180	2707.46450	-0.57970	15.32700	14.08750	HepG2	UTP3
PDXK	ENSG00000160209.14	2094.95900	3129.35310	-0.57890	14.81710	13.53260	HepG2	CKAP4
PDXK	ENSG00000160209.14	2145.83780	4220.48340	-0.97590	14.61530	13.49200	HepG2	AKAP1
PDXK	ENSG00000160209.14	2450.94640	3609.36310	-0.55840	13.89540	12.67830	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PDXK is not available on ENCORE database.

10 RBPs can affect the splicing of PDXK :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PDXK	ENSG00000160209.14	chr21	+	45165959	45166006			45163604	45163688	45168875	45168961	-0.13500	0.00001	0.00033	excluded	K562	U2AF2
SE	PDXK	ENSG00000160209.14	chr21	+	45152019	45152323			45148797	45148891	45153949	45154004	0.63200	0.00006	0.01225	included	HepG2	SSB
SE	PDXK	ENSG00000160209.14	chr21	+	45152019	45152323			45148797	45148891	45153949	45154004	-0.46300	0.00008	0.00840	excluded	HepG2	AKAP1
SE	PDXK	ENSG00000160209.14	chr21	+	45165959	45166006			45163604	45163688	45168875	45168961	-0.09700	0.00019	0.00581	excluded	K562	U2AF1
SE	PDXK	ENSG00000160209.14	chr21	+	45152019	45152528			45139057	45139262	45153949	45154004	0.05100	0.00034	0.00487	included	K562	AQR
SE	PDXK	ENSG00000160209.14	chr21	+	45163549	45163688			45161547	45161652	45165959	45166006	-0.07100	0.00034	0.01051	excluded	HepG2	SRSF1
SE	PDXK	ENSG00000160209.14	chr21	+	45165959	45166006			45163604	45163688	45168875	45168961	-0.05100	0.00038	0.06548	excluded	K562	NPM1
SE	PDXK	ENSG00000160209.14	chr21	+	45152019	45152323			45148797	45148891	45153949	45154004	-0.55700	0.00048	0.01479	excluded	HepG2	HNRNPK
SE	PDXK	ENSG00000160209.14	chr21	+	45152019	45152528			45148780	45148891	45153949	45154004	-0.52800	0.00086	0.05858	excluded	HepG2	IGF2BP3
MXE	PDXK	ENSG00000160209.14	chr21	+	45163549	45163688	45165959	45166006	45161547	45161652	45168875	45168961	0.12700	0.00429	0.04936	1included	K562	U2AF2

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDXK

General Information

Functions

Localization

Domains (AlphaFold: PDXK)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDXK is not avaliable on ENCORE database.

48 proteins are bound to PDXK RNA:

eCLIP assay for PDXK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDXK is not available on ENCORE database.

109 RBPs can affect the gene expression of PDXK :

The Knockdown/knockout RNA-Seq assay for PDXK is not available on ENCORE database.

10 RBPs can affect the splicing of PDXK :

The Knockdown/knockout RNA-Seq assay for PDXK is not avaliable on ENCORE database.