MSH5

General Information

Gene Name       : MSH5
Gene ID             : ENSG00000204410.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MSH5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MSH5ENSG00000204410.1428.5720.9324.75ENCSR000AEF
HepG2MSH5ENSG00000204410.1410.4913.1411.82ENCSR985KAT
K562MSH5ENSG00000204410.1437.9435.5436.74ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MSH5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MSH5 RNA is bound by 43 proteins.  







eCLIP assay for MSH5 is not avaliable on ENCORE database.





43 proteins are bound to MSH5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63172632631726374+3'-UTR,CDS,intron-Distal3.642054.73026K562SRSF1
chr63172896331728983+3'-UTR,CDS,intron-Proximal3.402118.11379K562BUD13
chr63172605231726070+3'-UTR,CDS3.5693213.77091K562DDX24
chr63172786631727905+3'-UTR,CDS,intron-Proximal3.3097112.56700K562UCHL5
chr63172989131729940+3'-UTR,CDS3.6143611.75786K562U2AF2
chr63172992331729962+3'-UTR,CDS3.772819.74534HepG2BCLAF1
chr63173220831732248+3'-UTR,CDS,intron-Proximal4.814768.42748K562ZC3H11A
chr63172992331729964+3'-UTR,CDS,intron-Proximal3.406569.43382K562GRWD1
chr63172593431725990+3'-UTR,CDS,intron-Proximal3.1394821.97931K562DDX24
chr63173066431730709+3'-UTR,5'-UTR,intron-Distal3.289339.03739K562UCHL5
chr63173221331732249+3'-UTR,CDS3.495085.48341K562GRWD1
chr63172764031727659+3'-UTR,CDS3.586343.93112K562RBM15
chr63173075931730879+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.146648.27991K562FUS
chr63172654431726574+3'-UTR,CDS4.5482227.34743K562DDX24
chr63172663131726651+3'-UTR,CDS3.215568.83000K562UCHL5
chr63172590231726000+3'-UTR,5'-UTR,CDS,intron-Proximal3.8078567.34975K562AQR
chr63172115031721213+3'-UTR,5'-UTR,CDS3.8068322.83893K562DDX24
chr63172963531729733+3'-UTR,5'-UTR,CDS,intron-Proximal3.750855.82560HepG2PABPN1
chr63173077631730813+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.521919.12920K562UCHL5
chr63172661131726632+3'-UTR,CDS4.6348927.34743K562DDX24
chr63172724831727274+3'-UTR,CDS3.024428.62157K562UCHL5
chr63173118431731241+3'-UTR,5'-UTR,CDS,intron-Proximal3.166473.56062K562U2AF2
chr63172725831727282+3'-UTR,CDS4.0336524.96706K562DDX24
chr63173220331732237+3'-UTR,CDS,intron-Proximal4.9002113.49179K562DDX24
chr63172897231728986+3'-UTR,CDS4.4124019.10492K562U2AF2
chr63172764731727697+3'-UTR,CDS5.191187.35950HepG2PPIG
chr63172888031728977+3'-UTR,CDS,intron-Proximal4.1700128.26517K562SF3B4
chr63172963531729681+3'-UTR,5'-UTR,CDS,intron-Proximal3.788095.73400HepG2PPIG
chr63172924831729303+3'-UTR,CDS,intron-Proximal4.357244.07830K562SRSF1
chr63173207831732132+3'-UTR,CDS,intron-Distal,intron-Proximal4.1894816.49077K562DDX24
chr63172772131727750+3'-UTR,CDS4.5722520.06307K562DDX24
chr63172933531729377+3'-UTR,CDS3.1094710.00090K562ZNF622
chr63172758731727745+3'-UTR,CDS4.371078.96264HepG2PABPN1
chr63172786731727897+3'-UTR,CDS4.081073.84295K562GRWD1
chr63173252631732596+3'-UTR5.8124915.02445HepG2ZC3H11A
chr63172893731728990+3'-UTR,CDS,intron-Proximal3.597218.89869K562SMNDC1
chr63173056231730587+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.221073.63681K562RBM15
chr63172770531727745+3'-UTR,CDS5.192756.16445HepG2PPIG
chr63172719331727244+3'-UTR,CDS,intron-Proximal4.6066350.49281K562DDX24
chr63173250931732592+3'-UTR4.9906014.07881K562ZC3H11A
chr63172959531729650+3'-UTR,5'-UTR,CDS,intron-Proximal3.790659.57266K562SRSF1
chr63172901931729036+3'-UTR,CDS4.7147914.05902K562DDX24
chr63172924931729297+3'-UTR,CDS5.0009426.30681K562DDX24
chr63172856531728616+3'-UTR,CDS,intron-Distal4.2199130.27410K562DDX24
chr63172959231729674+3'-UTR,5'-UTR,CDS,intron-Proximal4.055443.14726K562SRSF7
chr63173206731732116+3'-UTR,CDS,intron-Distal,intron-Proximal3.3783314.01110K562UCHL5
chr63172857931728608+3'-UTR,CDS,intron-Distal3.780455.99043HepG2GRWD1
chr63173031831730343+3'-UTR,5'-UTR3.4575114.38051K562DDX24
chr63172693331727002+3'-UTR,CDS,intron-Proximal3.2693820.16342K562ZNF622
chr63173128731731327+3'-UTR,5'-UTR,CDS3.635663.59112HepG2PPIG
chr63173220931732274+3'-UTR,CDS,intron-Proximal3.9676618.73902K562UCHL5
chr63172637931726398+3'-UTR,CDS,intron-Distal,intron-Proximal4.470446.08299HepG2PPIG
chr63172141031721444+3'-UTR,intron-Proximal5.7055559.99935K562AQR
chr63173085031730936+3'-UTR,CDS,intron-Distal3.2914211.80956K562DDX24
chr63172982931729941+3'-UTR,CDS,intron-Proximal4.6771914.47562HepG2U2AF2
chr63173075031730825+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.125093.19171K562U2AF2
chr63172711031727222+3'-UTR,CDS,intron-Proximal3.6631223.18125K562SF3B4
chr63173019731730217+3'-UTR,CDS4.1944717.24948K562DDX24
chr63173078531730825+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.489987.11699K562SF3B4
chr63172719331727235+3'-UTR,CDS,intron-Proximal3.2938312.79019K562AQR
chr63173076431730812+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.4409713.78939K562DDX24
chr63173076231730827+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.5404313.55722K562EFTUD2
chr63172637631726397+3'-UTR,CDS,intron-Distal3.4720413.93026K562ZNF622
chr63172638331726395+3'-UTR,CDS,intron-Distal4.7851015.20984K562DDX24
chr63172895031728996+3'-UTR,CDS,intron-Proximal3.527885.03700K562U2AF1
chr63172687431726949+3'-UTR,CDS4.2923752.27108K562DDX24
chr63172144431721467+3'-UTR,intron-Proximal5.9148649.60417K562AQR
chr63173204231732132+3'-UTR,CDS,intron-Distal,intron-Proximal3.073646.27353HepG2GRWD1
chr63172988231729928+3'-UTR,CDS,intron-Proximal3.9591439.46759K562DDX24
chr63172694031727046+3'-UTR,CDS,intron-Proximal4.3691122.99796K562EFTUD2
chr63172898631728996+3'-UTR,CDS3.648558.94654K562U2AF2
chr63172694031726986+3'-UTR,CDS,intron-Proximal4.398057.62267K562SRSF1
chr63172719531727238+3'-UTR,CDS,intron-Proximal3.8431414.68801K562UCHL5
chr63172894931728999+3'-UTR,CDS,intron-Proximal4.151576.44495HepG2U2AF2
chr63172632431726378+3'-UTR,CDS,intron-Distal,intron-Proximal4.3522226.40902K562DDX24
chr63173237631732421+3'-UTR3.773823.58455K562U2AF2
chr63172134431721403+3'-UTR,CDS3.1756512.69450K562DDX24
chr63173021631730300+3'-UTR,CDS3.085064.88837HepG2PABPN1
chr63172603031726070+3'-UTR,CDS4.551129.28243HepG2PPIG
chr63172764131727699+3'-UTR,CDS3.109565.20161K562MTPAP
chr63172632331726358+3'-UTR,CDS,intron-Distal,intron-Proximal4.015936.70085HepG2PPIG
chr63173019531730232+3'-UTR,CDS,intron-Proximal3.177547.24864K562GRWD1
chr63172763731727690+3'-UTR,CDS3.979809.11581K562SRSF1
chr63172137331721429+3'-UTR,CDS,intron-Proximal4.031284.16174HepG2PRPF8
chr63172654231726573+3'-UTR,CDS,intron-Proximal3.5101114.81161K562ZNF622
chr63172657431726611+3'-UTR,CDS4.2654834.23523K562DDX24
chr63172764131727695+3'-UTR,CDS3.391108.53142K562UCHL5
chr63172663231726652+3'-UTR,CDS4.4402623.11713K562DDX24
chr63172847731728514+3'-UTR,CDS,intron-Distal,intron-Proximal3.161098.39218K562UCHL5
chr63173091031730985+3'-UTR,CDS,intron-Distal,intron-Proximal4.1821614.90602HepG2PRPF8
chr63172896431728984+3'-UTR,CDS,intron-Proximal4.3618019.53768K562DDX24
chr63172765931727723+3'-UTR,CDS3.542087.79680K562RBM15
chr63173025731730304+3'-UTR,CDS3.247036.58484K562RBM15
chr63173086831730999+3'-UTR,CDS,intron-Distal,intron-Proximal3.6881114.62331HepG2EFTUD2
chr63172989831729948+3'-UTR,CDS5.196666.76175HepG2PPIG
chr63172721131727286+3'-UTR,CDS4.5159311.01413HepG2PPIG
chr63173119931731236+3'-UTR,5'-UTR,CDS4.1643113.89500K562DDX24
chr63172991131729954+3'-UTR,CDS5.087308.93274K562SRSF1
chr63172140631721409+3'-UTR,intron-Proximal5.6191146.76133K562AQR
chr63172657331726631+3'-UTR,CDS3.4303822.33826K562ZNF622
chr63172635031726376+3'-UTR,CDS,intron-Distal3.8166816.47696K562ZNF622
chr63173119931731222+3'-UTR,5'-UTR,CDS3.001383.49427K562RBM15
chr63172654331726631+3'-UTR,CDS3.3337924.06408K562UCHL5
chr63172786631727888+3'-UTR,CDS,intron-Proximal3.974704.41267HepG2PPIG
chr63172934531729378+3'-UTR,CDS4.7182719.62313K562DDX24
chr63173118831731199+3'-UTR,5'-UTR,CDS,intron-Proximal3.586343.93112K562RBM15
chr63172983231729922+3'-UTR,CDS,intron-Proximal3.8578849.07111K562SF3B4
chr63173112331731228+3'-UTR,5'-UTR,CDS,intron-Proximal3.959928.97789HepG2EFTUD2
chr63173220031732275+3'-UTR,CDS,intron-Proximal4.602405.11295K562U2AF2
chr63172992831729962+3'-UTR,CDS3.5347819.72510K562DDX24
chr63173205331732094+3'-UTR,CDS,intron-Distal4.153344.25576HepG2PABPN1
chr63172655331726616+3'-UTR,CDS3.432076.45347HepG2GRWD1
chr63172110631721184+3'-UTR,5'-UTR,CDS3.047983.53842K562SRSF7
chr63172724631727289+3'-UTR,CDS3.0464014.81531K562ZNF622
chr63173025231730318+3'-UTR,5'-UTR,CDS3.6756535.76622K562DDX24
chr63172850131728539+3'-UTR,CDS,intron-Distal,intron-Proximal4.6925621.44580K562DDX24
chr63172723931727296+3'-UTR,CDS,intron-Proximal3.635393.24881HepG2SRSF1
chr63172895131728972+3'-UTR,CDS,intron-Proximal5.0536220.89694K562U2AF2
chr63172971131729728+3'-UTR,CDS,intron-Proximal4.3446515.25586K562DDX24
chr63173025731730301+3'-UTR,CDS3.232723.97831K562ZNF800
chr63172786731727903+3'-UTR,CDS3.489954.06531HepG2GRWD1
chr63172710231727238+3'-UTR,CDS,intron-Proximal3.2412218.44273K562EFTUD2
chr63173089931730926+3'-UTR,CDS,intron-Distal3.998275.80935K562ZNF622
chr63172594431725993+3'-UTR,CDS4.599558.38781HepG2PPIG
chr63172799231728010+3'-UTR,CDS,intron-Proximal4.8116812.86643K562AQR
chr63172596231726003+3'-UTR,CDS3.453564.91393K562SRSF1
chr63172107731721088+3'-UTR,5'-UTR,CDS,intron-Proximal4.0707321.08649K562DDX24
chr63172786831727885+3'-UTR,CDS3.1834911.33573K562DDX24
chr63173093131730995+3'-UTR,CDS,intron-Distal,intron-Proximal3.7907632.60599K562PRPF8
chr63173219231732254+3'-UTR,CDS,intron-Proximal3.412844.69685K562FUS
chr63173021731730252+3'-UTR,CDS3.7186920.26392K562DDX24
chr63173211831732132+3'-UTR,CDS,intron-Proximal4.1800115.21824K562UCHL5
chr63173245531732506+3'-UTR4.698025.70989K562NOLC1
chr63172654131726616+3'-UTR,CDS,intron-Proximal4.2131513.07265HepG2PPIG
chr63170823331708262+5'-UTR,CDS4.989859.85896K562AQR
chr63171516331715172+5'-UTR,CDS,intron-Proximal4.3372128.25002K562DDX24
chr63171232031712358+5'-UTR,CDS,intron-Proximal4.7296749.97339K562DDX24
chr63171232031712359+5'-UTR,CDS,intron-Proximal4.352509.09836HepG2BCLAF1
chr63171516331715178+5'-UTR,CDS,intron-Proximal3.1186014.02072K562ZNF622
chr63171516231715218+5'-UTR,CDS,intron-Proximal3.5770511.77700HepG2PPIG
chr63171232231712343+5'-UTR,CDS,intron-Proximal3.7464818.48674K562ZNF622
chr63172588531725940+5'-UTR,CDS,intron-Proximal4.264777.72529HepG2SF3B4
chr63170820431708233+5'-UTR,intron-Proximal5.9898510.84943K562AQR
chr63170777731707834+5'-UTR4.545865.89060HepG2NCBP2
chr63172546231725521+5'-UTR,intron-Distal3.910433.61897HepG2HNRNPC
chr63171232331712344+5'-UTR,CDS3.4186512.50248K562UCHL5
chr63171234331712358+5'-UTR,CDS3.4731016.42270K562ZNF622
chr63171520231715274+5'-UTR,CDS,intron-Proximal3.1689820.60452K562HNRNPL
chr63171517231715201+5'-UTR,CDS4.1851438.59383K562DDX24
chr63171516331715215+5'-UTR,CDS,intron-Proximal3.412336.78387K562SRSF1
chr63170784031707892+5'-UTR,intron-Proximal4.945569.04436K562AQR
chr63171520131715209+5'-UTR,CDS4.6186932.70549K562DDX24
chr63171232331712359+5'-UTR,CDS,intron-Proximal3.662329.30518HepG2PPIG
chr63171199231712071+CDS3.6486918.76078K562UCHL5
chr63170897231709058+CDS3.394476.84486K562LIN28B
chr63170900931709055+CDS3.503954.06531HepG2GRWD1
chr63171068031710735+CDS,intron-Proximal5.4630714.42010HepG2PPIG
chr63170831731708391+CDS,intron-Proximal3.289927.33138HepG2BCLAF1
chr63171179931711866+CDS,intron-Proximal3.7323211.43407HepG2PRPF8
chr63170893731708973+CDS,intron-Proximal4.136515.24452HepG2PPIG
chr63171070531710731+CDS3.003516.86745K562UCHL5
chr63171088431710915+CDS,intron-Proximal5.8400612.79146K562DDX24
chr63170835731708419+CDS,intron-Proximal4.648515.93128HepG2PRPF8
chr63170889331708958+CDS,intron-Proximal3.5300810.20293K562SF3B4
chr63171199431712070+CDS4.0214625.65647K562ZNF622
chr63171202231712069+CDS4.8216411.68917HepG2PPIG
chr63171190231711976+CDS,intron-Proximal3.0501617.68666K562SF3B4
chr63170892431708971+CDS,intron-Proximal3.546465.09803K562GPKOW
chr63171067931710721+CDS3.0459110.62064K562ZNF622
chr63170890831708968+CDS,intron-Proximal5.4653235.62569K562AQR
chr63170890931708969+CDS,intron-Proximal3.624753.67894HepG2AQR
chr63170826531708307+CDS3.190929.72347K562ZNF622
chr63171201131712077+CDS,intron-Proximal4.6414052.81539K562DDX24
chr63171068931710731+CDS6.0707324.37980K562DDX24
chr63171189631711964+CDS,intron-Proximal3.673526.90628HepG2SF3A3
chr63170893731708963+CDS,intron-Proximal3.8929410.95347K562BUD13
chr63171196331711987+CDS,intron-Proximal3.6271020.24655K562DDX24
chr63171177831711802+CDS3.1435311.49281K562DDX24
chr63171166431711694+CDS,intron-Proximal4.612843.31221K562U2AF1
chr63171195931712043+CDS,intron-Proximal3.158674.70373K562SRSF1
chr63171167531711709+CDS,intron-Proximal3.914848.05393HepG2U2AF2
chr63172624131726323+CDS,intron-Distal,intron-Proximal6.3980514.61799K562EFTUD2
chr63171167131711721+CDS,intron-Proximal5.7088913.26681K562U2AF2
chr63170825831708329+CDS3.892334.01646HepG2SRSF1
chr63171088331710909+CDS,intron-Proximal4.347417.49899HepG2PPIG
chr63171292931713048+CDS,intron-Distal,intron-Proximal4.103376.73065K562HNRNPK
chr63171062631710674+CDS,intron-Proximal4.1333016.24867K562AQR
chr63171104031711128+intron-Distal,intron-Proximal4.280158.02555HepG2PCBP2
chr63172097231721002+intron-Distal,intron-Proximal4.1424812.89472HepG2HNRNPL
chr63170986931709926+intron-Distal3.340703.27276HepG2HNRNPL
chr63172844531728463+intron-Distal,intron-Proximal4.300456.99120K562AQR
chr63170916631709190+intron-Distal3.9049211.53060K562AGGF1
chr63173101531731092+intron-Distal,intron-Proximal3.404426.34474K562EFTUD2
chr63171972831719779+intron-Distal3.634517.97069K562ILF3
chr63171543431715491+intron-Distal3.3292518.05564K562HNRNPL
chr63171712531717185+intron-Distal3.6706110.08683K562ILF3
chr63172814731728200+intron-Distal4.258384.66841K562HNRNPL
chr63172359931723644+intron-Distal4.5268210.68324K562PTBP1
chr63172841731728457+intron-Distal,intron-Proximal5.112936.90654K562SF3B4
chr63171703031717066+intron-Distal4.229787.56833K562ILF3
chr63171002631710076+intron-Distal3.415975.12846K562HNRNPL
chr63171114031711199+intron-Distal3.628307.57836K562HNRNPK
chr63171702831717151+intron-Distal3.508284.51399HepG2ILF3
chr63170918231709205+intron-Distal4.185877.05160K562PRPF8
chr63172364431723704+intron-Distal4.3137312.95894K562PTBP1
chr63171653431716631+intron-Distal5.217557.43678HepG2DDX59
chr63172836331728456+intron-Distal,intron-Proximal3.111623.20049K562HNRNPK
chr63171812131718169+intron-Distal3.595433.08967K562KHDRBS1
chr63171945331719496+intron-Distal,intron-Proximal3.279007.83196K562ILF3
chr63171528831715401+intron-Distal,intron-Proximal3.4941224.75562K562AGGF1
chr63172093331720946+intron-Distal3.8011341.07991K562HNRNPL
chr63172066831720721+intron-Distal3.7479028.01788K562HNRNPL
chr63172809731728222+intron-Distal3.272204.90594K562HNRNPK
chr63171095631711050+intron-Distal,intron-Proximal4.266108.29740HepG2TIAL1
chr63172091731720933+intron-Distal3.7765238.49890K562HNRNPL
chr63172068331720777+intron-Distal3.6862217.53112HepG2HNRNPL
chr63173173531731777+intron-Distal,intron-Proximal3.699374.91585K562RBFOX2
chr63172072231720774+intron-Distal4.2201033.40969K562HNRNPL
chr63172741031727454+intron-Distal4.644334.40618K562PTBP1
chr63172094631721026+intron-Distal,intron-Proximal3.7850650.95817K562HNRNPL
chr63171528831715315+intron-Distal,intron-Proximal3.5226923.12316K562HNRNPL
chr63171540431715434+intron-Distal3.5137412.86816K562HNRNPL
chr63172820031728275+intron-Distal3.984643.80299K562HNRNPL
chr63171531531715404+intron-Distal3.5696028.43100K562HNRNPL
chr63171105331711140+intron-Distal5.0776115.04881K562HNRNPK
chr63172088831720917+intron-Distal3.2840229.89395K562HNRNPL
chr63172087331720972+intron-Distal4.2478627.87309HepG2HNRNPL
chr63172704631727102+intron-Distal,intron-Proximal3.912678.13137K562EFTUD2
chr63170916631709192+intron-Distal4.7286514.59846K562HNRNPL
chr63170919031709205+intron-Distal3.8311810.96887K562AGGF1
chr63171450431714650+intron-Distal3.669103.21749K562HNRNPC
chr63170985631709932+intron-Distal3.343813.90949K562HNRNPL
chr63171096631711053+intron-Distal,intron-Proximal3.3072810.91006K562HNRNPK
chr63171102031711054+intron-Distal,intron-Proximal3.735725.45902K562TIA1
chr63170919231709205+intron-Distal4.6210713.45737K562HNRNPL
chr63171529031715364+intron-Distal,intron-Proximal3.5722310.09908HepG2HNRNPL
chr63172624731726297+intron-Distal,intron-Proximal4.064156.08301HepG2EFTUD2
chr63173141631731469+intron-Distal,intron-Proximal3.932093.59342K562CSTF2T
chr63170916931709182+intron-Distal5.212108.12400K562PRPF8
chr63171770731717759+intron-Distal3.881644.24164HepG2DDX59
chr63171743331717556+intron-Distal3.529375.02497HepG2DDX59
chr63172695431726963+intron-Proximal3.4701912.03964K562AQR
chr63172717631727194+intron-Proximal4.2787311.53679K562BUD13
chr63172100231721012+intron-Proximal3.678974.88761HepG2HNRNPL
chr63171523231715290+intron-Proximal4.0643111.99290HepG2HNRNPL
chr63172717931727193+intron-Proximal3.523177.36655K562AQR
chr63173214131732181+3'-UTR,intron-Proximal3.110225.89932K562ZNF622
chr63171164931711675+intron-Proximal4.323898.26514HepG2U2AF2
chr63172713331727176+intron-Proximal3.464009.07794K562BUD13
chr63170840731708443+intron-Proximal5.3053326.58915K562AQR
chr63170844331708473+intron-Proximal3.9827014.67295K562AQR
chr63172121631721235+intron-Proximal3.462665.11245K562AQR
chr63171185031711893+intron-Proximal3.9497012.48238K562SF3B4
chr63172982031729887+intron-Proximal4.618986.54100K562PCBP1
chr63171208531712117+intron-Proximal5.687128.34710K562AQR
chr63172696731727012+intron-Proximal4.909044.02817HepG2PRPF8
chr63173213931732179+3'-UTR,intron-Proximal3.549029.75562K562UCHL5
chr63171236631712386+intron-Proximal5.049856.22530K562AQR
chr63172801031728035+intron-Proximal5.5386715.34985K562AQR
chr63171509431715141+intron-Proximal3.224377.53330K562HNRNPL
chr63171510731715132+intron-Proximal3.456668.18279K562SF3B4
chr63171527431715288+intron-Proximal3.4166116.64285K562HNRNPL
chr63172712231727186+intron-Proximal4.014103.27601HepG2RBM5
chr63172124731721323+intron-Proximal3.092025.95276K562GTF2F1
chr63170843931708484+intron-Proximal3.967257.84941K562EFTUD2
chr63172711631727195+intron-Proximal5.1576133.50393K562UCHL5
chr63172102631721077+intron-Proximal3.330587.66825K562HNRNPL
chr63172987631729887+intron-Proximal3.366379.05538K562U2AF2
chr63172696331726997+intron-Proximal3.5297015.87170K562AQR
chr63172729731727329+intron-Proximal5.314047.28294K562AQR
chr63171181831711892+intron-Proximal3.040976.00860K562SMNDC1
chr63172713331727193+intron-Proximal3.6508427.33890K562DDX24
chr63170892631708937+intron-Proximal3.234306.76988K562BUD13
chr63171096631711020+intron-Proximal4.5975213.48168K562TIA1
chr63170839931708407+intron-Proximal4.8361412.86643K562AQR
chr63171166231711671+intron-Proximal5.3339710.10245K562U2AF2
chr63172126631721314+intron-Proximal3.327977.22778K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MSH5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MSH5 is not available on ENCORE database.

  • 111 RBPs can affect the levels of MSH5.  








The Knockdown/knockout RNA-Seq assay for MSH5 is not available on ENCORE database.





111 RBPs can affect the gene expression of MSH5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MSH5ENSG00000204410.10294.54060609.86680-1.050003.928803.22800HepG2ACO1
MSH5ENSG00000204410.10237.34910380.77280-0.681903.044502.48950HepG2AKAP1
MSH5ENSG00000204410.10348.53110612.55940-0.813603.600402.73890HepG2AKAP8L
MSH5ENSG00000204410.10610.01980321.318700.924807.785806.16900HepG2BCCIP
MSH5ENSG00000204410.10470.31640315.052700.577903.906203.20780HepG2BOP1
MSH5ENSG00000204410.10890.49750502.827100.824406.899005.34550HepG2CCAR1
MSH5ENSG00000204410.10166.45440299.32940-0.846605.009603.98590HepG2CIRBP
MSH5ENSG00000204410.10230.32380609.52660-1.404008.192807.16620HepG2CKAP4
MSH5ENSG00000204410.10530.99010289.233000.876408.002006.88480HepG2CPSF6
MSH5ENSG00000204410.10120.33990198.50920-0.722103.012501.89230HepG2CSTF2
MSH5ENSG00000204410.10377.87340667.57880-0.8210011.108309.98880HepG2CELF1
MSH5ENSG00000204410.101338.90100717.735000.899406.326105.27210HepG2DAZAP1
MSH5ENSG00000204410.10451.44650295.618500.610703.304901.90580HepG2DDX27
MSH5ENSG00000204410.10183.88100364.76210-0.988207.089206.12950HepG2DDX3X
MSH5ENSG00000204410.10481.97440313.313200.621302.388401.81090HepG2DDX6
MSH5ENSG00000204410.10659.52890387.290900.767903.019402.29010HepG2DNAJC21
MSH5ENSG00000204410.10704.93210301.220401.2266015.1646013.84700HepG2EIF2S1
MSH5ENSG00000204410.10210.22710371.49420-0.821405.424904.19070HepG2EIF3D
MSH5ENSG00000204410.10598.03870332.895900.845102.309801.72340HepG2EIF4A3
MSH5ENSG00000204410.10356.48560595.76450-0.740903.287802.37800HepG2EWSR1
MSH5ENSG00000204410.10527.27510272.702500.951102.343901.61700HepG2FUBP3
MSH5ENSG00000204410.10573.63110335.841800.772203.637002.85120HepG2FXR1
MSH5ENSG00000204410.10746.13080311.561601.2598012.8626011.48310HepG2G3BP1
MSH5ENSG00000204410.10565.27590330.737600.773206.406705.04330HepG2G3BP2
MSH5ENSG00000204410.10179.64870330.75240-0.880602.491401.64650HepG2GEMIN5
MSH5ENSG00000204410.10546.45710315.439800.792602.566401.89280HepG2HNRNPK
MSH5ENSG00000204410.10495.50260653.77860-0.399903.684302.91430HepG2HNRNPL
MSH5ENSG00000204410.10484.66500312.884400.631304.164603.40770HepG2HNRNPLL
MSH5ENSG00000204410.10540.85250367.533900.557302.310701.64730HepG2IGF2BP1
MSH5ENSG00000204410.10825.77700441.269800.904002.802202.06560HepG2ILF2
MSH5ENSG00000204410.10893.12100635.533000.490802.654301.36740HepG2ILF3
MSH5ENSG00000204410.10566.39210318.535700.830205.883304.37130HepG2KHSRP
MSH5ENSG00000204410.10639.09520335.958900.927608.497207.36170HepG2MAGOH
MSH5ENSG00000204410.10263.31050390.68040-0.569203.521501.70840HepG2MARK2
MSH5ENSG00000204410.10237.80120337.84510-0.506602.155501.59460HepG2MATR3
MSH5ENSG00000204410.10210.20650388.76600-0.887103.898002.65260HepG2METAP2
MSH5ENSG00000204410.10651.47180319.117001.029507.672306.02540HepG2MTPAP
MSH5ENSG00000204410.10138.49190290.02820-1.066404.940803.45740HepG2NONO
MSH5ENSG00000204410.10388.77350277.437000.486702.306701.62170HepG2NSUN2
MSH5ENSG00000204410.10767.12510307.986601.3165017.9931016.20080HepG2PABPC4
MSH5ENSG00000204410.10270.67070454.75040-0.748504.365703.07980HepG2PCBP2
MSH5ENSG00000204410.10454.55640695.05470-0.612703.553801.54160HepG2PPIG
MSH5ENSG00000204410.10646.92900522.157700.309002.347201.62810HepG2PRPF4
MSH5ENSG00000204410.1079.06870243.76500-1.6243011.403309.92320HepG2PRPF8
MSH5ENSG00000204410.10568.36430323.660800.812202.444301.92470HepG2PTBP1
MSH5ENSG00000204410.10426.50890721.24760-0.7579012.1887011.13100HepG2PUM1
MSH5ENSG00000204410.10522.37930720.70540-0.464303.808203.02580HepG2PUM2
MSH5ENSG00000204410.101360.18180350.482701.9563066.2122063.96970HepG2QKI
MSH5ENSG00000204410.10135.26850438.90200-1.6981012.8941011.47020HepG2RAVER1
MSH5ENSG00000204410.10354.87440855.42780-1.269302.808102.28710HepG2RBM22
MSH5ENSG00000204410.10371.30420556.52060-0.583804.228102.98410HepG2RBM27
MSH5ENSG00000204410.10564.18560335.497600.749808.043007.07370HepG2RECQL
MSH5ENSG00000204410.10294.27680402.11800-0.450402.189901.57310HepG2RPLP0
MSH5ENSG00000204410.10225.04810361.53160-0.683904.150603.41340HepG2RPS19
MSH5ENSG00000204410.10348.02400513.23060-0.560403.979003.02810HepG2RPS2
MSH5ENSG00000204410.10451.76610654.48950-0.534802.266901.54120HepG2RPS3A
MSH5ENSG00000204410.10102.69780241.14040-1.231506.898205.71930HepG2RRP9
MSH5ENSG00000204410.10605.76920384.736800.654801.847101.30370HepG2SAFB2
MSH5ENSG00000204410.10170.31410713.52820-2.0668031.7710029.45460HepG2SF3A3
MSH5ENSG00000204410.10458.36110336.930700.443903.216102.58460HepG2SF3B4
MSH5ENSG00000204410.10468.79240966.08380-1.043202.565902.07680HepG2SRFBP1
MSH5ENSG00000204410.10134.17520333.23880-1.312409.215807.30960HepG2SRSF3
MSH5ENSG00000204410.10439.36570670.84720-0.610602.113501.55800HepG2SRSF5
MSH5ENSG00000204410.101028.67720316.169001.701904.282503.60820HepG2TAF15
MSH5ENSG00000204410.10657.40600290.465801.1783018.9109016.80390HepG2TIA1
MSH5ENSG00000204410.10184.04560574.77740-1.6429021.6080019.78860HepG2U2AF1
MSH5ENSG00000204410.10119.11570464.93810-1.964708.063706.29440HepG2U2AF2
MSH5ENSG00000204410.10906.19270702.642300.366902.082801.36290HepG2UBE2L3
MSH5ENSG00000204410.10268.12310185.799800.529002.643901.90350HepG2UCHL5
MSH5ENSG00000204410.10666.36180288.038701.2099010.907908.86720HepG2UPF2
MSH5ENSG00000204410.10471.86090650.40620-0.463004.198502.94090HepG2UTP18
MSH5ENSG00000204410.10374.05380610.93310-0.707808.555407.59550HepG2UTP3
MSH5ENSG00000204410.10970.17150586.219600.726705.603004.04310HepG2XPO5
MSH5ENSG00000204410.10290.64200482.62040-0.731604.431203.10390HepG2XRCC6
MSH5ENSG00000204410.10408.83750309.593600.401101.950801.33430HepG2XRN2
MSH5ENSG00000204410.10430.01530695.94760-0.6946010.747009.84460HepG2ZNF622
MSH5ENSG00000204410.102605.335702066.118100.334402.777101.55270K562ABCF1
MSH5ENSG00000204410.103249.922204015.36240-0.305102.967302.28990K562AKAP8L
MSH5ENSG00000204410.101358.788502660.08050-0.969105.844305.04570K562AQR
MSH5ENSG00000204410.103458.592104611.83900-0.415206.511004.67370K562CCDC124
MSH5ENSG00000204410.102135.126902814.67400-0.398607.552806.54760K562DDX47
MSH5ENSG00000204410.103712.838704321.15910-0.218902.648601.79550K562DKC1
MSH5ENSG00000204410.101091.156501485.05210-0.444704.065002.41260K562DNAJC21
MSH5ENSG00000204410.10976.546401545.58560-0.662408.384406.71760K562EFTUD2
MSH5ENSG00000204410.101820.111701340.893000.440704.526903.63440K562EIF2S2
MSH5ENSG00000204410.10790.769601654.53010-1.065109.622507.54300K562EIF3D
MSH5ENSG00000204410.10929.415801230.64780-0.405004.712403.68640K562EIF3G
MSH5ENSG00000204410.103038.416003565.05800-0.230602.587101.67560K562EIF4G2
MSH5ENSG00000204410.102156.988201684.045700.357003.786902.27120K562EXOSC5
MSH5ENSG00000204410.101167.915001485.17310-0.346702.820301.96310K562FIP1L1
MSH5ENSG00000204410.10814.304202289.60760-1.4915012.8213011.61630K562FXR1
MSH5ENSG00000204410.102470.134602042.807100.273902.486401.46790K562HNRNPA1
MSH5ENSG00000204410.101128.638001773.77900-0.652209.877208.80530K562HNRNPC
MSH5ENSG00000204410.101961.001601584.330000.307602.603501.49910K562HNRNPF
MSH5ENSG00000204410.10919.715401221.56340-0.409502.791501.85800K562HNRNPM
MSH5ENSG00000204410.101373.555401718.69870-0.323402.723101.34900K562LARP7
MSH5ENSG00000204410.103954.699304773.92300-0.271602.809101.89200K562MBNL1
MSH5ENSG00000204410.102761.221203799.83810-0.460606.100504.44190K562MSI2
MSH5ENSG00000204410.10867.734801523.69750-0.812305.732103.72160K562NONO
MSH5ENSG00000204410.102640.238602149.307600.296706.161305.10760K562NSUN2
MSH5ENSG00000204410.10965.895601621.56440-0.747407.622304.73400K562PA2G4
MSH5ENSG00000204410.101104.790501811.16480-0.7131010.572408.59490K562PCBP2
MSH5ENSG00000204410.101000.595301779.52200-0.830605.129902.65630K562PRPF6
MSH5ENSG00000204410.10370.694401504.04100-2.0205054.1617051.11180K562PRPF8
MSH5ENSG00000204410.102267.457301590.474100.511506.649005.14510K562PSIP1
MSH5ENSG00000204410.101411.424701977.83740-0.486806.440005.46220K562PTBP1
MSH5ENSG00000204410.102068.399203889.61890-0.9111019.9711017.70040K562PUF60
MSH5ENSG00000204410.103234.422003982.52760-0.300202.335201.82760K562PUS1
MSH5ENSG00000204410.103070.276303880.05000-0.337704.966504.19290K562RBM15
MSH5ENSG00000204410.102541.089401694.748300.584308.525905.77670K562RBM17
MSH5ENSG00000204410.101552.193101896.22890-0.288802.214101.46600K562RBM22
MSH5ENSG00000204410.101276.894301615.92670-0.339703.239601.79260K562RBM25
MSH5ENSG00000204410.101574.209101995.54330-0.342202.668101.59630K562NELFE
MSH5ENSG00000204410.10859.805101531.80000-0.833107.058905.73820K562RPS19
MSH5ENSG00000204410.101400.167602279.64850-0.703207.056805.36480K562RPS3
MSH5ENSG00000204410.10900.912701537.56390-0.771207.176205.06970K562RRP9
MSH5ENSG00000204410.101156.771101463.97690-0.339802.888801.78180K562SAFB
MSH5ENSG00000204410.101771.279202120.81210-0.259802.907602.07440K562SF3A3
MSH5ENSG00000204410.101186.107501771.52900-0.578806.185104.87050K562SF3B4
MSH5ENSG00000204410.101026.575601938.99780-0.9175019.4358017.56790K562SRSF1
MSH5ENSG00000204410.101715.089802200.36660-0.359502.552501.54840K562SRSF4
MSH5ENSG00000204410.101056.959101648.03080-0.6408010.340208.74750K562SYNCRIP
MSH5ENSG00000204410.101551.383401962.26780-0.339002.705402.00520K562TARDBP
MSH5ENSG00000204410.102093.929501625.636900.365103.153702.12990K562TRIM56
MSH5ENSG00000204410.10957.527501705.58540-0.8329016.8875014.85930K562U2AF2
MSH5ENSG00000204410.10884.756401676.16350-0.921805.905203.38570K562XRCC6
MSH5ENSG00000204410.101333.948601752.39380-0.393603.909901.73180K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MSH5 is not available on ENCORE database.





23 RBPs can affect the splicing of MSH5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMSH5ENSG00000204410.10chr6+317082303170839031707781317078393170893931709063-0.538000.000000.00000excludedK562SRSF1
SEMSH5ENSG00000204410.10chr6+317108843171094731710653317107343171168031711802-0.081000.000250.00667excludedK562SF3B4
SEMSH5ENSG00000204410.10chr6+317263243172639731725941317260703172654231726652-0.068000.002760.07874excludedK562PRPF8
SEMSH5ENSG00000204410.10chr6+317263243172639731725941317260703172654231726652-0.294000.002660.04580excludedHepG2U2AF1
SEMSH5ENSG00000204410.10chr6+317263243172639731725941317260703172654231726652-0.414000.000240.00418excludedHepG2U2AF2
SEMSH5ENSG00000204410.10chr6+317106533171073431708939317090633171168031711802-0.182000.000010.00223excludedK562SUPV3L1
SEMSH5ENSG00000204410.10chr6+317130133171309631712322317123583171516331715209-0.136000.000200.03934excludedK562LARP4
SEMSH5ENSG00000204410.10chr6+317130133171309631712322317123583171516331715209-0.197000.002250.04345excludedK562U2AF1
SEMSH5ENSG00000204410.10chr6+317130133171309631712322317123583171516331715209-0.191000.004480.06637excludedK562U2AF2
SEMSH5ENSG00000204410.10chr6+317108843171094731710653317107343171168031711802-0.093000.000040.00135excludedK562U2AF2
SEMSH5ENSG00000204410.10chr6+317278663172799331727562317277523172846631728616-0.055000.002500.04185excludedK562U2AF2
SEMSH5ENSG00000204410.10chr6+317278363172799331727562317277523172846631728616-0.077000.001440.04958excludedK562TARDBP
SEMSH5ENSG00000204410.10chr6+317308703173094531730196317303473173119131731332-0.230000.003380.06808excludedK562RBM15
SEMSH5ENSG00000204410.10chr6+3171301331713096317123223171235831715163317152090.347000.000000.00000includedK562HNRNPK
SEMSH5ENSG00000204410.10chr6+317082303170839031707781317078393170893931709063-0.256000.005070.06999excludedK562HNRNPC
A3SSMSH5ENSG00000204410.10chr6+317119153171207631711966317120763171168031711802-0.509000.000020.02125shorterK562FXR2
A3SSMSH5ENSG00000204410.10chr6+3171191531712076317119663171207631711680317118020.098000.004000.02374longerK562AQR
A5SSMSH5ENSG00000204410.10chr6+317295943172973231729594317296423172988831729962-0.245000.000830.07804shorterK562U2AF1
A5SSMSH5ENSG00000204410.10chr6+317268733172697731726873317269543172720131727289-0.153000.000040.01100shorterK562TARDBP
A5SSMSH5ENSG00000204410.10chr6+3170772431707997317077243170783931708230317083900.454000.000040.03651longerK562SAFB
A5SSMSH5ENSG00000204410.10chr6+3172687331726977317268733172695431727201317272890.123000.001780.06199longerK562PUS1
A5SSMSH5ENSG00000204410.10chr6+3172959431729732317295943172964231729888317299620.148000.000780.01505longerK562AQR
A5SSMSH5ENSG00000204410.10chr6+317268733172697731726873317269543172720131727289-0.278000.000530.04431shorterK562HNRNPC
A5SSMSH5ENSG00000204410.10chr6+317295943172973231729594317296423172988831729962-0.332000.000010.00105shorterK562U2AF2
RIMSH5ENSG00000204410.10chr6+3173188631732132317318863173193631732042317321320.074000.000000.00004includedK562SF3B4
RIMSH5ENSG00000204410.10chr6+317211593172140631721159317212163172134331721406-0.194000.000000.00002excludedK562DDX55
RIMSH5ENSG00000204410.10chr6+317211593172140631721159317212163172134331721406-0.121000.000310.02434excludedK562NCBP2
RIMSH5ENSG00000204410.10chr6+317211593172140631721159317212163172134331721406-0.146000.000220.02443excludedK562PHF6
RIMSH5ENSG00000204410.10chr6+3173188631732132317318863173193631732042317321320.054000.009640.09229includedK562PRPF8
RIMSH5ENSG00000204410.10chr6+3173188631732132317318863173193631732042317321320.055000.000990.07034includedK562XRN2
RIMSH5ENSG00000204410.10chr6+317211593172140631721159317212163172134331721406-0.151000.000130.01815excludedK562AARS
RIMSH5ENSG00000204410.10chr6+3172115931721406317211593172121631721343317214060.191000.000040.00183includedK562RBM22
RIMSH5ENSG00000204410.10chr6+3173188631732132317318863173193631732042317321320.053000.004760.04461includedK562EFTUD2
MXEMSH5ENSG00000204410.10chr6+31729594317296423172964231729732317292483172939231729888317299620.164000.001990.090031includedK562LARP4
MXEMSH5ENSG00000204410.10chr6+31727866317279933172846631728616317275623172775231728964317290390.324000.005620.078681includedHepG2U2AF1
MXEMSH5ENSG00000204410.10chr6+31708230317083903170893931709063317077243170799731710653317107340.075000.000270.015111includedK562LIN28B
MXEMSH5ENSG00000204410.10chr6+31708230317083903170893931709063317077813170783931710653317107340.140000.000000.000031includedK562LIN28B
MXEMSH5ENSG00000204410.10chr6+3171088431710947317116803171180231710653317107343171191531712076-0.061000.014480.085132includedK562AQR
MXEMSH5ENSG00000204410.10chr6+3171088431710947317116803171186731710653317107343171196631712076-0.088000.000110.002642includedK562U2AF2
MXEMSH5ENSG00000204410.10chr6+3171516331715209317210773172121631712322317123583172134331721817-0.158000.001340.025362includedK562HNRNPC
MXEMSH5ENSG00000204410.10chr6+3172959431729642317296423172973231729248317293923172988831729962-0.190000.005370.068882includedK562SF3B4
MXEMSH5ENSG00000204410.10chr6+3171088431710947317116803171186731710653317107343171196631712076-0.090000.000160.004492includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MSH5 is not avaliable on ENCORE database.