HDAC11

General Information

Gene Name       : HDAC11
Gene ID             : ENSG00000163517.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HDAC11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HDAC11ENSG00000163517.140.040.050.04ENCSR000AEF
HepG2HDAC11ENSG00000163517.1414.816.9710.89ENCSR985KAT
K562HDAC11ENSG00000163517.143.553.023.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HDAC11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HDAC11 RNA is bound by 9 proteins.  







eCLIP assay for HDAC11 is not avaliable on ENCORE database.





9 proteins are bound to HDAC11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr31354701613547109+3'-UTR5.0490610.63403HepG2AKAP1
chr31354625613546347+3'-UTR5.6744215.68171HepG2UPF1
chr31354634713546389+3'-UTR5.126945.07111HepG2UPF1
chr31354720313547247+3'-UTR4.365734.81659HepG2UPF1
chr31354705613547130+3'-UTR6.2753535.94228K562UPF1
chr31354703113547114+3'-UTR4.248573.56427K562FAM120A
chr31354702613547107+3'-UTR4.067054.36184HepG2PRPF4
chr31354694113547018+3'-UTR4.9040414.04531HepG2UPF1
chr31354693113547003+3'-UTR5.563759.17081HepG2AKAP1
chr31354701813547139+3'-UTR5.6308120.66476HepG2UPF1
chr31354629713546331+3'-UTR5.032005.85041HepG2AKAP1
chr31354717913547258+3'-UTR6.4034817.70869K562UPF1
chr31354694313547003+3'-UTR4.525058.17454K562UPF1
chr31354652413546579+3'-UTR3.605113.17663HepG2AKAP1
chr31354669113546751+3'-UTR5.128325.85041HepG2AKAP1
chr31354713013547192+3'-UTR4.097464.01829HepG2AKAP1
chr31354652213546567+3'-UTR5.231715.35992HepG2UPF1
chr31354633113546409+3'-UTR5.544776.92572HepG2AKAP1
chr31354616913546203+3'-UTR,CDS3.704763.20756HepG2UPF1
chr31354646513546510+3'-UTR4.570133.98590HepG2AKAP1
chr31354656713546608+3'-UTR5.311266.23064HepG2UPF1
chr31354719213547267+3'-UTR4.418395.03349HepG2AKAP1
chr31354700713547056+3'-UTR5.2719616.53238K562UPF1
chr31354671813546820+3'-UTR5.9575913.23699K562UPF1
chr31354618513546223+3'-UTR3.604493.27723HepG2AKAP1
chr31354664613546768+3'-UTR6.5748815.72143HepG2UPF1
chr31354624013546297+3'-UTR4.672057.15385HepG2AKAP1
chr31352192013521948+5'-UTR,intron-Distal,intron-Proximal3.601444.23750HepG2PRPF4
chr31352185613521920+5'-UTR,intron-Distal,intron-Proximal3.393933.92318HepG2PRPF4
chr31353998313540079+CDS,intron-Distal,intron-Proximal4.561993.25089HepG2AQR
chr31353596413536050+intron-Distal4.6534513.29556HepG2HNRNPL
chr31353597113536042+intron-Distal4.203133.07260HepG2AGGF1
chr31352508513525156+intron-Distal,intron-Proximal3.732367.20533HepG2EFTUD2
chr31353698313537108+intron-Distal4.788086.92529HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HDAC11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HDAC11 is not available on ENCORE database.

  • 136 RBPs can affect the levels of HDAC11.  








The Knockdown/knockout RNA-Seq assay for HDAC11 is not available on ENCORE database.





136 RBPs can affect the gene expression of HDAC11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HDAC11ENSG00000163517.10385.14780552.34360-0.520202.604101.56030HepG2AATF
HDAC11ENSG00000163517.10491.126301012.18710-1.043303.741702.65470HepG2ABCF1
HDAC11ENSG00000163517.10734.313101104.68860-0.589206.521105.66830HepG2ACO1
HDAC11ENSG00000163517.10257.33260501.16800-0.961709.297207.61280HepG2ADAR
HDAC11ENSG00000163517.10917.855402662.71030-1.5366014.1906013.08400HepG2AKAP1
HDAC11ENSG00000163517.10742.605601109.70650-0.579505.957404.86880HepG2AKAP8L
HDAC11ENSG00000163517.102247.352101196.932900.9088030.4810028.63650HepG2AUH
HDAC11ENSG00000163517.10731.39850394.709100.889804.721003.57480HepG2BCLAF1
HDAC11ENSG00000163517.10614.43560238.511401.365109.423108.40260HepG2BOP1
HDAC11ENSG00000163517.10505.51360769.96790-0.607003.920002.74570HepG2CCAR1
HDAC11ENSG00000163517.10858.587602093.05580-1.2856011.7110010.22960HepG2CIRBP
HDAC11ENSG00000163517.10612.863601104.24140-0.8494013.5481012.30660HepG2CKAP4
HDAC11ENSG00000163517.101193.24490832.932300.518502.735901.63610HepG2CPSF7
HDAC11ENSG00000163517.101109.47770827.993600.422103.719502.99630HepG2CELF1
HDAC11ENSG00000163517.101452.65850890.203500.7064018.6568017.04580HepG2DAZAP1
HDAC11ENSG00000163517.10625.343901021.58350-0.708109.452408.08540HepG2DDX19B
HDAC11ENSG00000163517.10296.16120608.62620-1.039209.379708.20980HepG2DDX21
HDAC11ENSG00000163517.10299.61610596.23110-0.992807.115305.66290HepG2DDX24
HDAC11ENSG00000163517.101841.517902550.30990-0.469802.523001.92350HepG2DDX3X
HDAC11ENSG00000163517.102625.547301930.005400.443904.779103.10220HepG2DDX47
HDAC11ENSG00000163517.10411.29140586.56420-0.512103.435801.92470HepG2DDX52
HDAC11ENSG00000163517.10945.32840446.700701.0814011.031909.61180HepG2DDX55
HDAC11ENSG00000163517.10525.34300248.638501.079103.525102.42450HepG2DDX59
HDAC11ENSG00000163517.103760.296802191.628800.778709.449508.38020HepG2DDX6
HDAC11ENSG00000163517.10947.56070486.726600.961009.638307.92970HepG2DHX30
HDAC11ENSG00000163517.10442.078501056.83410-1.2574021.3502019.88870HepG2DKC1
HDAC11ENSG00000163517.10892.38450504.629000.8223013.8285012.35110HepG2DNAJC21
HDAC11ENSG00000163517.10250.64130699.70800-1.4811014.6545012.79550HepG2EEF2
HDAC11ENSG00000163517.10427.07540583.18250-0.449502.885901.75490HepG2EFTUD2
HDAC11ENSG00000163517.102736.653202106.012500.377802.977602.36250HepG2EIF2S1
HDAC11ENSG00000163517.10314.10120567.92920-0.854507.410405.99320HepG2EIF3D
HDAC11ENSG00000163517.10274.82920575.17850-1.065505.990404.48900HepG2EIF3G
HDAC11ENSG00000163517.101005.742302326.97860-1.2102011.3939010.12430HepG2EIF4A3
HDAC11ENSG00000163517.10587.686002266.42820-1.9473018.9956017.30570HepG2EIF4B
HDAC11ENSG00000163517.101139.81580878.320400.375903.430002.51330HepG2EIF4G1
HDAC11ENSG00000163517.101271.38370841.360400.595506.549105.32020HepG2EIF4G2
HDAC11ENSG00000163517.10465.19830876.41020-0.913804.104802.79580HepG2ESF1
HDAC11ENSG00000163517.10806.898001374.17310-0.7681013.7265012.55200HepG2ETF1
HDAC11ENSG00000163517.10682.967201079.29430-0.660203.897202.90530HepG2EWSR1
HDAC11ENSG00000163517.10538.336501021.93640-0.924703.239602.41230HepG2FIP1L1
HDAC11ENSG00000163517.10822.873702349.07300-1.5133013.4154012.01250HepG2FXR1
HDAC11ENSG00000163517.101060.161102178.45260-1.039006.792805.77030HepG2G3BP1
HDAC11ENSG00000163517.101165.865402313.56530-0.988707.518306.04000HepG2G3BP2
HDAC11ENSG00000163517.10210.48630505.64450-1.2644013.0328011.20190HepG2GEMIN5
HDAC11ENSG00000163517.10374.63390248.148400.594201.863801.33130HepG2GPKOW
HDAC11ENSG00000163517.101345.501401054.535800.351404.148702.96850HepG2HDGF
HDAC11ENSG00000163517.10292.96970509.46400-0.798206.780405.83530HepG2HNRNPA1
HDAC11ENSG00000163517.101007.41280818.167300.300102.882201.93140HepG2HNRNPA2B1
HDAC11ENSG00000163517.10394.72320566.70200-0.521703.512002.73750HepG2HNRNPC
HDAC11ENSG00000163517.101050.56930415.387201.3385031.6982029.71230HepG2HNRNPF
HDAC11ENSG00000163517.101085.778402207.41470-1.023607.440506.33640HepG2HNRNPK
HDAC11ENSG00000163517.10970.40420810.879000.259002.639001.98050HepG2HNRNPL
HDAC11ENSG00000163517.10379.33220236.816900.679602.374601.78640HepG2HNRNPLL
HDAC11ENSG00000163517.10406.70520704.73260-0.793103.492102.43190HepG2HNRNPM
HDAC11ENSG00000163517.10877.08580409.041601.1004020.1480018.39140HepG2IGF2BP1
HDAC11ENSG00000163517.101443.157702214.11570-0.617504.369003.53760HepG2IGF2BP2
HDAC11ENSG00000163517.10672.044302078.79350-1.629109.381007.65520HepG2IGF2BP3
HDAC11ENSG00000163517.10765.14690575.035900.412004.899303.94570HepG2ILF2
HDAC11ENSG00000163517.102802.039901589.214600.818103.682202.12830HepG2ILF3
HDAC11ENSG00000163517.101408.541002227.45920-0.661203.958402.73980HepG2KHSRP
HDAC11ENSG00000163517.101294.980701009.695100.358905.132803.75220HepG2KIF1C
HDAC11ENSG00000163517.10567.74430813.15380-0.518303.172402.28080HepG2LARP4
HDAC11ENSG00000163517.10456.82650648.36960-0.505204.075102.60510HepG2LIN28B
HDAC11ENSG00000163517.10752.813502349.89870-1.6422014.2555012.81500HepG2MAGOH
HDAC11ENSG00000163517.10457.256402362.84760-2.3695023.3846021.69730HepG2MATR3
HDAC11ENSG00000163517.10403.56770594.33410-0.558502.368001.39160HepG2METAP2
HDAC11ENSG00000163517.10467.13890826.51730-0.823203.614702.69070HepG2MSI2
HDAC11ENSG00000163517.10806.694002418.34070-1.5839012.9718011.65850HepG2NCBP2
HDAC11ENSG00000163517.101061.56660882.728900.266102.222401.53830HepG2NOL12
HDAC11ENSG00000163517.103310.350801490.341501.151206.019404.67300HepG2PABPC1
HDAC11ENSG00000163517.101587.213502152.93130-0.439802.721302.00500HepG2PABPC4
HDAC11ENSG00000163517.10362.73540557.20630-0.619306.552805.33280HepG2PARN
HDAC11ENSG00000163517.10864.143502119.34930-1.2943054.5998052.54540HepG2PCBP1
HDAC11ENSG00000163517.10376.37090549.67610-0.546402.547401.55130HepG2PCBP2
HDAC11ENSG00000163517.10685.67490502.106900.449403.887703.02880HepG2PPIL4
HDAC11ENSG00000163517.10388.86480581.78030-0.581205.974404.88260HepG2PRPF4
HDAC11ENSG00000163517.10295.89640577.78140-0.965405.074203.46140HepG2PRPF6
HDAC11ENSG00000163517.10189.67630344.46330-0.860805.879604.74960HepG2PRPF8
HDAC11ENSG00000163517.10703.377602156.58120-1.6164079.0879077.12300HepG2PTBP1
HDAC11ENSG00000163517.10529.91870894.55910-0.7554014.4304013.29740HepG2PUM1
HDAC11ENSG00000163517.10636.03970893.88700-0.491004.689803.82770HepG2PUM2
HDAC11ENSG00000163517.10481.767001125.16670-1.2237021.5147020.09360HepG2PUS1
HDAC11ENSG00000163517.101518.634601031.866900.557408.070406.71070HepG2RBM15
HDAC11ENSG00000163517.10593.961601148.56820-0.9514018.8897017.78190HepG2RBM22
HDAC11ENSG00000163517.10418.47350744.86610-0.831807.407705.77470HepG2RBM27
HDAC11ENSG00000163517.10355.53170604.86660-0.766605.824704.28150HepG2RCC2
HDAC11ENSG00000163517.10449.672402400.01460-2.41610153.09780150.71060HepG2NELFE
HDAC11ENSG00000163517.10606.694102235.38400-1.88150102.73280100.15180HepG2RECQL
HDAC11ENSG00000163517.10829.00110447.417800.889708.754107.64700HepG2RPLP0
HDAC11ENSG00000163517.10809.27190521.236100.634603.822402.71200HepG2RPS10
HDAC11ENSG00000163517.10301.10680552.69820-0.876207.630606.67010HepG2RPS19
HDAC11ENSG00000163517.10407.89170686.91950-0.752007.593406.31190HepG2RPS2
HDAC11ENSG00000163517.10530.11960701.24360-0.403602.934901.82660HepG2RPS5
HDAC11ENSG00000163517.101008.96320501.325201.0090025.0941023.42360HepG2SAFB2
HDAC11ENSG00000163517.10340.87950879.10920-1.366806.920805.82120HepG2SF3A3
HDAC11ENSG00000163517.10527.85210234.374601.1712010.880609.56770HepG2SF3B1
HDAC11ENSG00000163517.10860.874502245.16460-1.3829012.9577011.82680HepG2SF3B4
HDAC11ENSG00000163517.101369.67760808.048900.7612020.1719018.61820HepG2SLBP
HDAC11ENSG00000163517.10380.35060584.61260-0.620207.537006.55500HepG2SMN1
HDAC11ENSG00000163517.10801.90590541.746300.565703.591302.48610HepG2SMNDC1
HDAC11ENSG00000163517.10784.91190517.036600.602204.041402.08280HepG2SND1
HDAC11ENSG00000163517.102188.074001297.289900.7541023.6988022.60800HepG2SRFBP1
HDAC11ENSG00000163517.10358.123202343.51260-2.71010191.07010188.79410HepG2SRSF1
HDAC11ENSG00000163517.101093.60140408.091301.4220044.3096042.24170HepG2SRSF7
HDAC11ENSG00000163517.10502.577401126.39730-1.1643031.7645030.46040HepG2SSB
HDAC11ENSG00000163517.101084.336902006.60390-0.887906.133404.32050HepG2SSRP1
HDAC11ENSG00000163517.10631.36330946.23660-0.583708.872807.86590HepG2SUCLG1
HDAC11ENSG00000163517.101186.98170689.570600.783403.411602.37550HepG2SUPT6H
HDAC11ENSG00000163517.10968.243002106.57060-1.1215035.1656033.45480HepG2TAF15
HDAC11ENSG00000163517.10645.171301970.91160-1.611109.648707.79160HepG2TBRG4
HDAC11ENSG00000163517.101030.98800551.909100.901404.467703.78580HepG2TRIM56
HDAC11ENSG00000163517.10623.51450823.29990-0.401002.983202.07130HepG2TUFM
HDAC11ENSG00000163517.10426.73380873.87490-1.034103.700502.97720HepG2U2AF1
HDAC11ENSG00000163517.101695.84620871.482300.960403.576302.61890HepG2UBE2L3
HDAC11ENSG00000163517.10326.54720752.70370-1.204806.259705.41780HepG2UTP3
HDAC11ENSG00000163517.10369.08800583.32910-0.660303.235602.08630HepG2XRCC6
HDAC11ENSG00000163517.10422.14870574.13150-0.443604.108603.31480HepG2ZC3H8
HDAC11ENSG00000163517.1061.93820122.47340-0.983603.455302.12130K562AARS
HDAC11ENSG00000163517.10477.18630290.157700.717606.834406.00010K562AGGF1
HDAC11ENSG00000163517.10485.29930318.891000.605704.729803.36150K562AKAP8
HDAC11ENSG00000163517.10340.52510189.770100.843406.382505.14380K562EIF4A3
HDAC11ENSG00000163517.10140.4069090.402800.635102.179101.42430K562FIP1L1
HDAC11ENSG00000163517.1066.28430116.39260-0.812302.555801.47950K562FKBP4
HDAC11ENSG00000163517.10123.66560197.35180-0.674303.275302.62570K562FXR1
HDAC11ENSG00000163517.1015.5606081.13280-2.382408.721507.32110K562G3BP2
HDAC11ENSG00000163517.10125.1546060.727101.043202.804802.00470K562GPKOW
HDAC11ENSG00000163517.10348.51240198.631500.811005.376004.31780K562GRSF1
HDAC11ENSG00000163517.10372.67090244.258500.609404.328002.98730K562HNRNPA1
HDAC11ENSG00000163517.10240.78940133.941000.846104.616703.86440K562HNRNPC
HDAC11ENSG00000163517.10256.54390122.562901.065606.903505.65620K562HSPD1
HDAC11ENSG00000163517.10213.56330148.893200.520302.234301.50360K562MTPAP
HDAC11ENSG00000163517.10211.34560116.324300.861402.762101.47190K562NONO
HDAC11ENSG00000163517.10314.13370141.378701.151704.923803.49700K562PABPN1
HDAC11ENSG00000163517.10175.79220102.629300.776303.524902.57990K562PPIG
HDAC11ENSG00000163517.10310.82500168.043900.887203.045301.49760K562PPP1R8
HDAC11ENSG00000163517.10185.47430116.856900.666402.303901.56090K562RPS19
HDAC11ENSG00000163517.10287.06200157.562000.865302.845701.51710K562SFPQ
HDAC11ENSG00000163517.10364.18150248.088200.553703.000501.42860K562SUCLG1
HDAC11ENSG00000163517.10359.73950177.599801.018203.900402.08750K562SUPT6H
HDAC11ENSG00000163517.10240.00350115.511801.054906.259504.79480K562TIAL1
HDAC11ENSG00000163517.1042.6290081.24910-0.930502.661601.87240K562U2AF2
HDAC11ENSG00000163517.10181.74000117.559900.628402.220701.31630K562UCHL5
HDAC11ENSG00000163517.10330.55720175.436500.913908.130606.97840K562UPF1
HDAC11ENSG00000163517.10215.92090150.118600.524302.255101.46590K562WDR3
HDAC11ENSG00000163517.10241.92250156.084500.632103.749802.77440K562WDR43
HDAC11ENSG00000163517.10432.64680254.965200.762806.508804.52860K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HDAC11 is not available on ENCORE database.





15 RBPs can affect the splicing of HDAC11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHDAC11ENSG00000163517.10chr3+1354337013543433135249631352506413544383135444800.170000.000370.03691includedHepG2G3BP1
SEHDAC11ENSG00000163517.10chr3+135433701354343313522745135228941354438313544480-0.184000.003610.05858excludedHepG2U2AF1
SEHDAC11ENSG00000163517.10chr3+1354312913543225135421891354228913543370135440880.056000.001450.03630includedHepG2HNRNPK
SEHDAC11ENSG00000163517.10chr3+135443831354448013524963135250641354559313545772-0.098000.000030.00142excludedHepG2HNRNPK
SEHDAC11ENSG00000163517.10chr3+1354221213542289135249631352506413543370135440880.316000.001960.02486includedHepG2U2AF2
SEHDAC11ENSG00000163517.10chr3+1354221213542289135249631352506413543370135440880.398000.000010.00190includedHepG2SFPQ
SEHDAC11ENSG00000163517.10chr3+135382351353835213524963135250641354221213542289-0.280000.000350.03459excludedHepG2DDX6
SEHDAC11ENSG00000163517.10chr3+135433701354343313524963135250641354438313544480-0.177000.000080.03013excludedHepG2CDC40
SEHDAC11ENSG00000163517.10chr3+135422121354228913524963135250641354337013544088-0.308000.001460.06426excludedHepG2PCBP1
SEHDAC11ENSG00000163517.10chr3+135249631352506413522745135228941354438313544480-0.101000.000220.01418excludedHepG2SF3B4
SEHDAC11ENSG00000163517.10chr3+1354337013543433135249631352506413544383135444800.170000.000400.05605includedHepG2KHSRP
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135433701354343313522745135228941354438313544480-0.426000.000330.008412includedK562DROSHA
MXEHDAC11ENSG00000163517.10chr3+13524963135250641353823513538352135227451352289413540012135400550.127000.000860.032951includedHepG2TAF15
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135433701354343313522745135228941354438313544480-0.198000.014560.073102includedHepG2U2AF2
MXEHDAC11ENSG00000163517.10chr3+13543370135434331354438313544480135227451352289413545593135457720.055000.001260.041801includedHepG2PCBP1
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135433701354343313522745135228941354559313545772-0.053000.002810.074302includedHepG2PCBP1
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135382351353835213522745135228941354221213542289-0.206000.000790.039872includedHepG2DROSHA
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135433701354343313522745135228941354438313544480-0.207000.008820.090292includedHepG2HNRNPUL1
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135443831354448013522745135228941354559313545772-0.341000.000080.006232includedK562SBDS
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135443831354448013522745135228941354559313545772-0.337000.000160.008902includedK562PPIL4
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135433701354343313522745135228941354438313544480-0.388000.000010.001402includedK562PPIL4
MXEHDAC11ENSG00000163517.10chr3+1352496313525064135433701354343313522745135228941354438313544480-0.368000.001440.029992includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HDAC11 is not avaliable on ENCORE database.