CSNK1E

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CSNK1E	ENSG00000213923.11	33.05	53.28	43.16	ENCSR000AEF
HepG2	CSNK1E	ENSG00000213923.11	63.07	36.97	50.02	ENCSR985KAT
K562	CSNK1E	ENSG00000213923.11	52.97	43.06	48.02	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CSNK1E-BGKcLV28-K562	ENCSR251LKQ	CSNK1E	K562	Released		ENCSR220DTX	CRISPR	KD% = 84.7,85.2

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CSNK1E	ENCAB344UBI	A302-135A	1			Released, ENCODE4		BGKcLV28-45, Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
CSNK1E	K562	CRISPR	ENCSR251LKQ	ENCSR220DTX	CSNK1E-BGKcLV28-45,CSNK1E-BGKcLV28-46	NT-BGKcLV28-1,NT-BGKcLV28-2	84.7,85.2	Released	ENCODE4
CSNK1E	HepG2	CRISPR			BGHcLV29-45,BGHcLV29-46	BGHcLV29-1,BGHcLV29-2	no clear band,	NotSatisfied	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

Proteins bound to RNA

CSNK1E RNA is bound by 45 proteins.

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

45 proteins are bound to CSNK1E RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	38687832	38687908	-	3'-UTR,intron-Distal,intron-Proximal	6.47840	12.00747	K562	PABPC4
chr22	38686719	38686809	-	3'-UTR,intron-Distal	5.19054	35.84521	K562	PUM2
chr22	38694094	38694148	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.93999	3.82414	HepG2	HNRNPK
chr22	38687212	38687253	-	3'-UTR,intron-Distal	4.17114	6.81876	K562	UPF1
chr22	38690185	38690252	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.27883	3.68881	HepG2	SRSF1
chr22	38687268	38687333	-	3'-UTR,intron-Distal,intron-Proximal	3.05514	7.13302	K562	EIF4G2
chr22	38690076	38690149	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.30651	5.59104	K562	BUD13
chr22	38689243	38689270	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.33760	3.90373	HepG2	AQR
chr22	38686898	38686922	-	3'-UTR,intron-Distal	4.14139	3.19904	K562	TIA1
chr22	38692046	38692216	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	5.37918	20.35012	K562	CSTF2T
chr22	38687920	38687964	-	3'-UTR,intron-Distal,intron-Proximal	4.45541	4.64001	HepG2	U2AF2
chr22	38690239	38690322	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.73337	7.68851	HepG2	AQR
chr22	38687778	38687826	-	3'-UTR,intron-Distal	4.97012	6.89039	K562	RBM15
chr22	38690182	38690253	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.51336	6.70384	HepG2	PPIG
chr22	38686889	38686927	-	3'-UTR,intron-Distal	3.18975	6.32251	K562	UPF1
chr22	38687718	38687778	-	3'-UTR,intron-Distal	3.75263	7.09919	K562	RBM15
chr22	38687269	38687352	-	3'-UTR,intron-Distal,intron-Proximal	4.04865	9.54397	HepG2	UPF1
chr22	38690347	38690384	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.26096	3.35417	K562	METAP2
chr22	38686713	38686783	-	3'-UTR,intron-Distal	3.97060	7.01022	HepG2	FUBP3
chr22	38710103	38710172	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.82431	8.21285	K562	ZNF622
chr22	38690070	38690127	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.75262	12.67123	K562	PRPF8
chr22	38693735	38693757	-	3'-UTR,intron-Distal	3.09893	4.24473	HepG2	CSTF2T
chr22	38690067	38690165	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.69010	33.34983	HepG2	PRPF8
chr22	38687121	38687175	-	3'-UTR,intron-Distal	3.35877	8.33876	K562	UPF1
chr22	38689319	38689418	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.57784	5.70176	HepG2	AQR
chr22	38690215	38690252	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.26096	3.44826	K562	METAP2
chr22	38687155	38687259	-	3'-UTR,intron-Distal	4.69034	6.18915	HepG2	PABPN1
chr22	38690226	38690295	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.94995	11.41721	HepG2	PRPF8
chr22	38690384	38690417	-	3'-UTR,CDS,intron-Distal	3.35496	3.32039	HepG2	PPIG
chr22	38689232	38689296	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.07285	4.09989	K562	UCHL5
chr22	38686854	38686896	-	3'-UTR,intron-Distal	4.06892	7.65541	K562	TIA1
chr22	38686740	38686792	-	3'-UTR,intron-Distal	4.62046	5.20806	K562	TIA1
chr22	38690080	38690117	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.64061	4.97857	HepG2	AQR
chr22	38692128	38692228	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	5.94911	9.85253	K562	FMR1
chr22	38687105	38687173	-	3'-UTR,intron-Distal	4.64842	4.88516	K562	METAP2
chr22	38686719	38686774	-	3'-UTR,intron-Distal	4.74705	10.86757	K562	PABPC4
chr22	38690347	38690370	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.55493	4.13746	HepG2	PPIG
chr22	38687131	38687202	-	3'-UTR,intron-Distal	3.67703	7.83039	HepG2	HNRNPK
chr22	38686873	38686931	-	3'-UTR,intron-Distal	4.10305	5.35382	HepG2	FUBP3
chr22	38690121	38690173	-	3'-UTR,CDS,intron-Distal	3.37116	6.97987	K562	ZNF622
chr22	38689252	38689262	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.19258	9.78712	K562	AQR
chr22	38687273	38687372	-	3'-UTR,intron-Distal,intron-Proximal	3.68056	12.30674	K562	TARDBP
chr22	38691391	38691453	-	3'-UTR,intron-Distal,intron-Proximal	3.81693	8.84510	HepG2	CSTF2T
chr22	38690525	38690637	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.18998	17.25791	HepG2	SF3B4
chr22	38687601	38687668	-	3'-UTR,intron-Distal	3.81159	7.00273	K562	YBX3
chr22	38693655	38693751	-	3'-UTR,intron-Distal	3.28321	6.46557	HepG2	CSTF2
chr22	38713171	38713246	-	5'-UTR,intron-Distal	6.14010	8.97384	HepG2	DDX3X
chr22	38713301	38713406	-	5'-UTR,intron-Distal	5.29713	8.00387	K562	GTF2F1
chr22	38713302	38713400	-	5'-UTR,intron-Distal	4.11380	13.85072	HepG2	DDX3X
chr22	38713196	38713393	-	5'-UTR,intron-Distal	3.77093	12.76389	K562	DDX24
chr22	38713246	38713302	-	5'-UTR,intron-Distal	4.39775	12.55933	HepG2	DDX3X
chr22	38712900	38713067	-	5'-UTR,intron-Distal,intron-Proximal	4.01543	3.76710	K562	NONO
chr22	38713318	38713391	-	5'-UTR,intron-Distal	5.60199	7.21923	HepG2	BUD13
chr22	38713329	38713395	-	5'-UTR,intron-Distal	3.15978	4.29961	K562	METAP2
chr22	38713287	38713407	-	5'-UTR,intron-Distal	3.90644	14.87651	HepG2	PRPF4
chr22	38713327	38713404	-	5'-UTR,intron-Distal	3.62344	6.74131	K562	GEMIN5
chr22	38713296	38713399	-	5'-UTR,intron-Distal	3.96263	7.16836	HepG2	NCBP2
chr22	38713270	38713402	-	5'-UTR,intron-Distal	4.10958	15.61418	K562	ZNF622
chr22	38713332	38713402	-	5'-UTR,intron-Distal	3.55096	5.39685	HepG2	CSTF2T
chr22	38713308	38713403	-	5'-UTR,intron-Distal	4.25864	14.18652	HepG2	PPIG
chr22	38699210	38699259	-	CDS,intron-Distal,intron-Proximal	3.74936	8.09841	HepG2	BUD13
chr22	38699142	38699153	-	CDS,intron-Distal,intron-Proximal	3.25556	3.36945	K562	ZNF622
chr22	38698975	38699016	-	CDS,intron-Distal,intron-Proximal	3.66068	8.74774	HepG2	PPIG
chr22	38699201	38699254	-	CDS,intron-Distal,intron-Proximal	4.78580	8.51520	K562	DDX24
chr22	38698860	38698919	-	CDS,intron-Distal,intron-Proximal	3.54827	3.61076	HepG2	HLTF
chr22	38696016	38696072	-	CDS,intron-Distal,intron-Proximal	3.28848	3.09251	K562	METAP2
chr22	38698866	38698899	-	CDS,intron-Distal	3.90923	6.36347	HepG2	PPIG
chr22	38698848	38698867	-	CDS,intron-Distal,intron-Proximal	3.33115	4.41130	K562	AQR
chr22	38695853	38695929	-	CDS,intron-Distal,intron-Proximal	3.04712	7.06302	HepG2	AQR
chr22	38695900	38695951	-	CDS,intron-Distal,intron-Proximal	3.02066	3.52281	HepG2	GRWD1
chr22	38696880	38696933	-	CDS,intron-Distal	4.42256	4.72880	HepG2	GRWD1
chr22	38699202	38699254	-	CDS,intron-Distal,intron-Proximal	3.42419	10.78542	K562	ZNF622
chr22	38695899	38695931	-	CDS,intron-Distal,intron-Proximal	3.20437	4.61143	K562	UCHL5
chr22	38710085	38710103	-	CDS,intron-Distal,intron-Proximal	3.31909	9.32936	K562	ZNF622
chr22	38695853	38695907	-	CDS,intron-Distal,intron-Proximal	3.45410	5.56310	HepG2	PRPF8
chr22	38710084	38710141	-	CDS,intron-Distal,intron-Proximal	3.64673	9.80107	K562	DDX24
chr22	38694860	38694936	-	CDS,intron-Distal,intron-Proximal	4.93778	6.98580	K562	METAP2
chr22	38699141	38699162	-	CDS,intron-Distal,intron-Proximal	3.62712	5.86107	HepG2	PPIG
chr22	38699199	38699216	-	CDS,intron-Distal	3.02076	3.00343	HepG2	GRWD1
chr22	38696914	38696958	-	CDS,intron-Distal,intron-Proximal	3.78077	4.66686	K562	DDX24
chr22	38695920	38695948	-	CDS,intron-Distal,intron-Proximal	3.51514	5.55970	K562	YBX3
chr22	38699212	38699308	-	CDS,intron-Distal,intron-Proximal	3.20076	5.84640	HepG2	AQR
chr22	38699216	38699254	-	CDS,intron-Distal,intron-Proximal	3.09938	3.09811	HepG2	GRWD1
chr22	38699186	38699254	-	CDS,intron-Distal,intron-Proximal	3.20259	11.01599	HepG2	PPIG
chr22	38689223	38689243	-	intron-Distal,intron-Proximal	3.78572	3.67894	HepG2	AQR
chr22	38767830	38767959	-	intron-Distal	3.03163	3.40713	K562	HNRNPL
chr22	38693383	38693446	-	intron-Distal	4.10884	4.47016	HepG2	CSTF2
chr22	38694245	38694291	-	intron-Distal,intron-Proximal	3.50246	4.71060	K562	BUD13
chr22	38770109	38770167	-	intron-Distal	4.00921	3.86679	K562	SAFB2
chr22	38793956	38794052	-	intron-Distal	3.07454	4.13791	K562	CSTF2T
chr22	38776220	38776299	-	intron-Distal,intron-Proximal	4.29894	13.27493	K562	HNRNPL
chr22	38712374	38712418	-	intron-Distal	3.96909	3.59342	K562	CSTF2T
chr22	38689576	38689622	-	intron-Distal	6.74528	14.88148	HepG2	XPO5
chr22	38694663	38694752	-	intron-Distal,intron-Proximal	4.10058	4.75425	K562	EFTUD2
chr22	38754110	38754186	-	intron-Distal	3.26001	3.08145	HepG2	HLTF
chr22	38694714	38694773	-	intron-Distal,intron-Proximal	3.69270	6.79023	HepG2	RBM22
chr22	38691681	38691745	-	intron-Distal	3.52459	3.87422	HepG2	CSTF2
chr22	38689639	38689692	-	intron-Distal	3.05962	4.30396	K562	UCHL5
chr22	38706427	38706511	-	intron-Distal	3.97875	3.30664	K562	NONO
chr22	38772066	38772132	-	intron-Distal	3.93044	3.65589	K562	SAFB2
chr22	38776218	38776255	-	intron-Distal	3.92859	8.73821	HepG2	HNRNPL
chr22	38692091	38692209	-	intron-Distal,intron-Proximal	3.87643	6.08282	HepG2	CDC40
chr22	38700531	38700593	-	intron-Distal	3.08873	3.35050	HepG2	SUGP2
chr22	38773221	38773330	-	intron-Distal	3.60962	5.34807	K562	ILF3
chr22	38767859	38767960	-	intron-Distal	3.53648	7.15670	HepG2	HNRNPL
chr22	38793842	38793928	-	intron-Distal	3.33565	3.46580	HepG2	CSTF2T
chr22	38778797	38778928	-	intron-Distal	3.42145	4.70733	K562	HNRNPL
chr22	38771561	38771646	-	intron-Distal	4.30524	9.15019	K562	SAFB2
chr22	38793954	38794015	-	intron-Distal	4.38332	5.40320	K562	NONO
chr22	38689646	38689717	-	intron-Distal	3.22872	3.84532	K562	XRCC6
chr22	38689640	38689711	-	intron-Distal	3.42437	5.07297	K562	BUD13
chr22	38691540	38691566	-	intron-Distal,intron-Proximal	4.10331	4.10564	HepG2	CSTF2T
chr22	38712988	38713051	-	intron-Distal,intron-Proximal	3.10311	3.01436	K562	CSTF2T
chr22	38793322	38793395	-	intron-Distal	3.63783	5.85006	K562	NONO
chr22	38691745	38691821	-	intron-Distal	4.02858	5.94173	HepG2	CSTF2
chr22	38690002	38690115	-	intron-Distal,intron-Proximal	5.55675	14.28850	K562	AQR
chr22	38691770	38691894	-	intron-Distal	4.95553	21.30826	HepG2	CSTF2T
chr22	38776218	38776293	-	intron-Distal,intron-Proximal	4.42792	13.67874	K562	AGGF1
chr22	38690660	38690717	-	intron-Distal	4.04329	4.22598	K562	CSTF2T
chr22	38698795	38698848	-	intron-Distal,intron-Proximal	3.64986	5.35619	K562	AQR
chr22	38695848	38695899	-	intron-Distal,intron-Proximal	5.60844	5.69951	K562	AQR
chr22	38689642	38689708	-	intron-Distal	3.44563	5.81766	HepG2	EFTUD2
chr22	38689636	38689706	-	intron-Distal	3.17691	8.38944	K562	PRPF8
chr22	38694719	38694762	-	intron-Distal,intron-Proximal	3.12541	4.02266	HepG2	CSTF2T
chr22	38787130	38787249	-	intron-Distal	3.50333	4.56666	K562	HNRNPM
chr22	38692047	38692086	-	intron-Distal	3.64782	4.84557	HepG2	CSTF2T
chr22	38766459	38766536	-	intron-Distal	4.44223	5.16344	K562	SAFB2
chr22	38689335	38689360	-	intron-Distal,intron-Proximal	3.01372	3.94281	K562	PRPF8
chr22	38694251	38694291	-	intron-Distal,intron-Proximal	4.51306	4.78571	K562	UCHL5
chr22	38692086	38692205	-	intron-Distal,intron-Proximal	4.98512	32.95380	HepG2	CSTF2T
chr22	38757342	38757386	-	intron-Distal,intron-Proximal	3.81406	3.07706	HepG2	TIAL1
chr22	38776810	38776866	-	intron-Distal,intron-Proximal	3.22141	3.02891	HepG2	HNRNPL
chr22	38771574	38771637	-	intron-Distal	3.93650	3.24150	HepG2	HLTF
chr22	38770547	38770642	-	intron-Distal	3.18773	3.26524	K562	SAFB2
chr22	38765998	38766060	-	intron-Distal,intron-Proximal	3.10242	3.67498	K562	SAFB2
chr22	38691042	38691110	-	intron-Distal	3.15396	5.43093	HepG2	CSTF2T
chr22	38690569	38690622	-	intron-Distal,intron-Proximal	4.31000	10.47661	K562	SF3B4
chr22	38691670	38691749	-	intron-Distal	4.70924	10.62681	HepG2	CSTF2T
chr22	38689403	38689464	-	intron-Distal,intron-Proximal	4.40808	8.23899	K562	PRPF8
chr22	38689372	38689412	-	intron-Distal,intron-Proximal	4.58162	18.72254	HepG2	SF3B4
chr22	38689217	38689252	-	intron-Distal,intron-Proximal	4.42642	10.93035	K562	AQR
chr22	38779874	38779974	-	intron-Distal	3.44095	6.14017	HepG2	HNRNPL
chr22	38694249	38694303	-	intron-Distal,intron-Proximal	3.24400	7.46825	HepG2	CSTF2T
chr22	38690254	38690297	-	intron-Distal,intron-Proximal	4.45080	5.95597	K562	EFTUD2
chr22	38776255	38776307	-	intron-Distal,intron-Proximal	3.55908	8.55644	HepG2	HNRNPL
chr22	38692078	38692211	-	intron-Distal,intron-Proximal	5.96172	32.81345	HepG2	CSTF2
chr22	38771646	38771732	-	intron-Distal	4.53366	6.47232	K562	SAFB2
chr22	38761355	38761409	-	intron-Distal	4.28813	3.27946	HepG2	HNRNPM
chr22	38689620	38689699	-	intron-Distal	3.89306	14.21275	K562	EFTUD2
chr22	38691821	38691887	-	intron-Distal	4.53593	4.66791	HepG2	CSTF2
chr22	38689224	38689246	-	intron-Distal,intron-Proximal	4.15747	4.45914	HepG2	PRPF8
chr22	38710024	38710067	-	intron-Distal,intron-Proximal	4.81522	5.35117	HepG2	PRPF8
chr22	38694663	38694761	-	intron-Distal,intron-Proximal	4.11231	6.20417	HepG2	BUD13
chr22	38766894	38766956	-	intron-Distal	4.25395	5.13876	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CSNK1E is not available on ENCORE database.
110 RBPs can affect the levels of CSNK1E.

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

110 RBPs can affect the gene expression of CSNK1E :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CSNK1E	ENSG00000213923.6	1840.21090	1589.07220	0.21160	2.40880	1.83460	HepG2	ACO1
CSNK1E	ENSG00000213923.6	1589.68630	2095.92300	-0.39880	2.73460	2.20550	HepG2	AKAP1
CSNK1E	ENSG00000213923.6	1383.91100	1596.45550	-0.20610	1.97640	1.31360	HepG2	AKAP8L
CSNK1E	ENSG00000213923.6	2340.73740	1856.98610	0.33390	5.25930	4.36250	HepG2	AUH
CSNK1E	ENSG00000213923.6	1226.49010	911.12610	0.42870	2.14640	1.32500	HepG2	BCCIP
CSNK1E	ENSG00000213923.6	1960.97530	1195.43180	0.71390	10.49660	9.42880	HepG2	BOP1
CSNK1E	ENSG00000213923.6	1060.25970	1647.55630	-0.63590	7.05050	5.85540	HepG2	CIRBP
CSNK1E	ENSG00000213923.6	2230.33810	1518.39890	0.55460	4.68470	3.88740	HepG2	CELF1
CSNK1E	ENSG00000213923.6	879.69770	1172.99120	-0.41510	3.51140	2.75480	HepG2	DDX21
CSNK1E	ENSG00000213923.6	767.33360	1148.76320	-0.58220	6.05960	4.71360	HepG2	DDX24
CSNK1E	ENSG00000213923.6	1114.19650	2007.55290	-0.84940	11.48910	10.29520	HepG2	DDX3X
CSNK1E	ENSG00000213923.6	1543.41590	895.88980	0.78460	7.13370	5.96190	HepG2	DDX55
CSNK1E	ENSG00000213923.6	1126.72550	1520.28580	-0.43220	6.52900	5.57240	HepG2	DKC1
CSNK1E	ENSG00000213923.6	1261.59680	1025.87960	0.29830	2.39910	1.73880	HepG2	DNAJC21
CSNK1E	ENSG00000213923.6	1567.44890	1016.83290	0.62420	6.89820	5.93350	HepG2	DNAJC2
CSNK1E	ENSG00000213923.6	1135.89510	1514.20570	-0.41470	2.64980	1.74510	HepG2	EEF2
CSNK1E	ENSG00000213923.6	981.91650	1229.21100	-0.32410	2.23190	1.41160	HepG2	EIF3D
CSNK1E	ENSG00000213923.6	777.54330	1108.30190	-0.51140	5.48440	4.03460	HepG2	EIF3G
CSNK1E	ENSG00000213923.6	1038.59900	1831.87790	-0.81870	9.46620	8.29290	HepG2	EIF4A3
CSNK1E	ENSG00000213923.6	2471.42540	1783.98450	0.47010	3.03310	2.31560	HepG2	EIF4B
CSNK1E	ENSG00000213923.6	1992.58020	1517.04880	0.39330	6.48080	5.06500	HepG2	HDGF
CSNK1E	ENSG00000213923.6	1985.15810	1461.38690	0.44180	7.67560	6.56080	HepG2	HNRNPF
CSNK1E	ENSG00000213923.6	1256.89780	1537.27290	-0.29050	2.21890	1.36640	HepG2	HNRNPM
CSNK1E	ENSG00000213923.6	1611.10640	1144.42080	0.49330	9.08190	8.03130	HepG2	HNRNPU
CSNK1E	ENSG00000213923.6	1829.80640	1439.04760	0.34650	3.50600	2.69860	HepG2	IGF2BP1
CSNK1E	ENSG00000213923.6	1613.61540	1168.98720	0.46490	10.06620	8.75460	HepG2	ILF2
CSNK1E	ENSG00000213923.6	1316.03210	1849.56140	-0.49100	4.29790	3.48370	HepG2	MAGOH
CSNK1E	ENSG00000213923.6	1366.25170	1903.53780	-0.47850	4.05930	3.29720	HepG2	NCBP2
CSNK1E	ENSG00000213923.6	2480.38310	1618.88270	0.61550	12.07560	10.53180	HepG2	NOL12
CSNK1E	ENSG00000213923.6	1440.92850	1764.81360	-0.29250	3.66840	2.99050	HepG2	PCBP1
CSNK1E	ENSG00000213923.6	1420.91730	1020.73120	0.47710	6.80600	5.69090	HepG2	PPIL4
CSNK1E	ENSG00000213923.6	1082.78510	1379.94940	-0.34990	4.39270	3.44260	HepG2	PRPF4
CSNK1E	ENSG00000213923.6	1973.07760	1640.50710	0.26620	4.32300	3.61730	HepG2	PUM1
CSNK1E	ENSG00000213923.6	1295.14120	1618.55860	-0.32160	4.59430	3.83820	HepG2	PUS1
CSNK1E	ENSG00000213923.6	2891.89330	2279.15740	0.34340	4.12060	3.09930	HepG2	RBM15
CSNK1E	ENSG00000213923.6	2586.94170	1782.02920	0.53760	10.72390	9.85010	HepG2	RBM22
CSNK1E	ENSG00000213923.6	820.15200	1051.91650	-0.35910	2.33870	1.36740	HepG2	RCC2
CSNK1E	ENSG00000213923.6	1646.92260	1998.51600	-0.27920	3.38660	2.80060	HepG2	NELFE
CSNK1E	ENSG00000213923.6	1594.11010	1861.36390	-0.22360	2.36080	1.78510	HepG2	RECQL
CSNK1E	ENSG00000213923.6	1111.07620	683.27630	0.70130	5.63240	4.54690	HepG2	RRP9
CSNK1E	ENSG00000213923.6	1530.77920	1019.15490	0.58680	12.88780	11.64950	HepG2	SAFB2
CSNK1E	ENSG00000213923.6	930.62490	1200.45390	-0.36730	2.62570	1.71080	HepG2	SERBP1
CSNK1E	ENSG00000213923.6	1677.79170	1175.08130	0.51370	5.50590	4.53720	HepG2	SF3B1
CSNK1E	ENSG00000213923.6	1926.67460	1481.81500	0.37860	7.22210	6.17180	HepG2	SLBP
CSNK1E	ENSG00000213923.6	1409.61680	1188.50280	0.24610	3.06790	2.39520	HepG2	SMN1
CSNK1E	ENSG00000213923.6	3378.67570	2012.72790	0.74720	28.31750	27.15300	HepG2	SRFBP1
CSNK1E	ENSG00000213923.6	1039.94820	1951.47990	-0.90810	28.40690	27.24220	HepG2	SRSF1
CSNK1E	ENSG00000213923.6	2067.70730	1435.76860	0.52610	10.72410	9.50690	HepG2	SRSF7
CSNK1E	ENSG00000213923.6	1885.93240	1587.64030	0.24830	3.10570	2.52760	HepG2	SRSF9
CSNK1E	ENSG00000213923.6	922.30390	1747.50950	-0.92200	28.51700	27.25980	HepG2	SSB
CSNK1E	ENSG00000213923.6	2076.04500	1735.30400	0.25850	3.64670	2.95100	HepG2	SUCLG1
CSNK1E	ENSG00000213923.6	1051.43360	1754.09020	-0.73840	15.49950	14.33390	HepG2	TAF15
CSNK1E	ENSG00000213923.6	1452.24270	2641.20930	-0.86290	4.90570	3.51680	HepG2	TBRG4
CSNK1E	ENSG00000213923.6	866.79630	597.64540	0.53630	3.34700	2.25800	HepG2	TFIP11
CSNK1E	ENSG00000213923.6	1306.68730	1121.96020	0.21980	2.15150	1.64160	HepG2	TRIM56
CSNK1E	ENSG00000213923.6	2152.71380	1152.98090	0.90070	2.72340	1.74290	HepG2	U2AF2
CSNK1E	ENSG00000213923.6	2170.58560	1598.11840	0.44160	3.59060	2.63090	HepG2	UBE2L3
CSNK1E	ENSG00000213923.6	928.20580	526.71390	0.81730	8.32920	7.01350	HepG2	UCHL5
CSNK1E	ENSG00000213923.6	1170.90930	1695.51070	-0.53410	7.69740	6.62730	HepG2	UPF1
CSNK1E	ENSG00000213923.6	2502.06520	1864.73570	0.42400	10.61890	9.72120	HepG2	ZNF622
CSNK1E	ENSG00000213923.6	1484.40060	1145.48480	0.37380	3.04300	1.75310	K562	ABCF1
CSNK1E	ENSG00000213923.6	3686.75370	2102.70240	0.81000	31.24110	29.42090	K562	AGGF1
CSNK1E	ENSG00000213923.6	2819.71600	2310.63000	0.28720	2.57490	1.63240	K562	AKAP8
CSNK1E	ENSG00000213923.6	3277.54020	2187.97630	0.58290	6.71200	5.66140	K562	AKAP8L
CSNK1E	ENSG00000213923.6	1274.13820	1863.23330	-0.54830	5.67520	3.80260	K562	APOBEC3C
CSNK1E	ENSG00000213923.6	2902.31480	2295.75010	0.33810	4.85750	3.61100	K562	ATP5C1
CSNK1E	ENSG00000213923.6	1164.10720	871.46600	0.41760	5.35770	4.00470	K562	BCLAF1
CSNK1E	ENSG00000213923.6	1245.90410	926.13380	0.42780	4.34590	3.36440	K562	CPSF6
CSNK1E	ENSG00000213923.6	848.61510	661.13680	0.36010	2.88090	1.80280	K562	CSTF2
CSNK1E	ENSG00000213923.6	948.38320	764.14160	0.31150	2.98050	1.60270	K562	DDX27
CSNK1E	ENSG00000213923.6	1454.32690	1088.81380	0.41750	4.43180	3.06860	K562	DDX3X
CSNK1E	ENSG00000213923.6	1360.58390	1103.92160	0.30150	3.06780	1.67100	K562	DDX6
CSNK1E	ENSG00000213923.6	3128.42270	2354.29900	0.41000	7.42180	5.86800	K562	DKC1
CSNK1E	ENSG00000213923.6	1478.90220	959.20600	0.62450	3.77080	2.57680	K562	EIF3A
CSNK1E	ENSG00000213923.6	686.71240	477.99170	0.52260	4.77920	3.74850	K562	EIF3G
CSNK1E	ENSG00000213923.6	1361.52190	1024.44300	0.41030	3.40370	2.09960	K562	EIF4B
CSNK1E	ENSG00000213923.6	1396.98770	992.97820	0.49240	6.40000	4.25230	K562	EWSR1
CSNK1E	ENSG00000213923.6	1327.73770	823.48930	0.68900	8.77950	7.17370	K562	FIP1L1
CSNK1E	ENSG00000213923.6	1485.43750	1073.17810	0.46890	6.30730	3.42460	K562	FUBP3
CSNK1E	ENSG00000213923.6	906.37170	1183.01180	-0.38430	4.28500	3.55550	K562	FXR1
CSNK1E	ENSG00000213923.6	1187.80140	784.90780	0.59760	5.35480	3.28400	K562	G3BP1
CSNK1E	ENSG00000213923.6	251.50360	587.25560	-1.22340	6.08140	4.94570	K562	G3BP2
CSNK1E	ENSG00000213923.6	1107.97460	775.99870	0.51370	3.11170	1.58890	K562	GEMIN5
CSNK1E	ENSG00000213923.6	1834.59140	1384.00010	0.40650	3.88810	2.99730	K562	GRSF1
CSNK1E	ENSG00000213923.6	2281.46760	1431.98120	0.67180	2.97510	1.69930	K562	HNRNPA2B1
CSNK1E	ENSG00000213923.6	605.05710	1096.81580	-0.85820	12.84770	11.63730	K562	HNRNPC
CSNK1E	ENSG00000213923.6	1227.45670	979.60430	0.32530	2.49900	1.42490	K562	HNRNPF
CSNK1E	ENSG00000213923.6	1004.66170	677.37290	0.56860	4.61850	3.38870	K562	HNRNPM
CSNK1E	ENSG00000213923.6	1741.93390	1116.41880	0.64170	8.11220	6.76660	K562	HSPD1
CSNK1E	ENSG00000213923.6	1427.83580	821.52840	0.79730	7.12220	5.17230	K562	IGF2BP2
CSNK1E	ENSG00000213923.6	1174.15910	835.36150	0.49110	4.08070	2.56930	K562	IGF2BP3
CSNK1E	ENSG00000213923.6	2900.62220	2321.92250	0.32090	3.67490	2.70590	K562	KIF1C
CSNK1E	ENSG00000213923.6	1294.17260	978.35040	0.40350	3.61330	1.79880	K562	LSM11
CSNK1E	ENSG00000213923.6	2956.32610	2222.70570	0.41140	3.79310	2.46720	K562	MAK16
CSNK1E	ENSG00000213923.6	3735.18870	2601.14910	0.52190	8.12700	6.40100	K562	MBNL1
CSNK1E	ENSG00000213923.6	1179.93770	863.07870	0.45100	4.29570	3.18870	K562	METAP2
CSNK1E	ENSG00000213923.6	1729.32270	1445.46140	0.25860	2.97410	2.13670	K562	MTPAP
CSNK1E	ENSG00000213923.6	1916.38840	1606.01350	0.25480	3.95120	3.07880	K562	NSUN2
CSNK1E	ENSG00000213923.6	1410.13210	1080.14500	0.38450	2.84780	1.39910	K562	NUSAP1
CSNK1E	ENSG00000213923.6	2322.83180	1252.15480	0.89140	4.94300	3.51230	K562	PABPN1
CSNK1E	ENSG00000213923.6	1099.77430	843.65980	0.38240	3.00330	1.59330	K562	PCBP1
CSNK1E	ENSG00000213923.6	1451.61190	934.88270	0.63470	7.50980	6.01540	K562	PPIG
CSNK1E	ENSG00000213923.6	2651.20010	1488.25670	0.83290	3.91110	2.06930	K562	PPP1R8
CSNK1E	ENSG00000213923.6	1440.21820	983.45100	0.55030	6.18540	4.75480	K562	PSIP1
CSNK1E	ENSG00000213923.6	1477.44560	2303.93420	-0.64100	8.63000	7.17820	K562	PUF60
CSNK1E	ENSG00000213923.6	4198.93670	2169.73520	0.95240	10.78910	9.76430	K562	PUS1
CSNK1E	ENSG00000213923.6	3155.88880	2114.19360	0.57780	5.40580	4.60230	K562	RBM15
CSNK1E	ENSG00000213923.6	1095.19070	803.49950	0.44670	3.39610	2.45960	K562	RBM22
CSNK1E	ENSG00000213923.6	2852.50910	1540.43530	0.88880	4.30500	2.26760	K562	RBM39
CSNK1E	ENSG00000213923.6	1232.08270	766.94520	0.68380	4.54480	3.49520	K562	RPS19
CSNK1E	ENSG00000213923.6	2750.44720	1144.88360	1.26440	7.59060	5.25950	K562	SF1
CSNK1E	ENSG00000213923.6	1989.70400	1584.76110	0.32820	4.09730	3.11640	K562	SF3A3
CSNK1E	ENSG00000213923.6	915.66680	610.01620	0.58590	3.69980	2.70730	K562	SF3B4
CSNK1E	ENSG00000213923.6	1237.19870	850.75510	0.54020	5.47540	3.88950	K562	SRFBP1
CSNK1E	ENSG00000213923.6	2195.18980	1623.62520	0.43500	9.36540	7.75410	K562	SRPK2
CSNK1E	ENSG00000213923.6	1087.23020	821.88100	0.40360	2.66290	1.96800	K562	SRSF1
CSNK1E	ENSG00000213923.6	1341.28380	1075.63430	0.31830	2.53490	1.53470	K562	SRSF4
CSNK1E	ENSG00000213923.6	1296.63430	776.37250	0.73990	4.38750	3.01530	K562	SRSF5
CSNK1E	ENSG00000213923.6	1277.62230	988.13510	0.37060	2.63370	1.42090	K562	STAU1
CSNK1E	ENSG00000213923.6	898.47490	1260.51750	-0.48850	2.58700	1.79550	K562	SYNCRIP
CSNK1E	ENSG00000213923.6	1119.97530	802.25980	0.48120	2.88850	2.05030	K562	TIA1
CSNK1E	ENSG00000213923.6	1282.74050	787.60130	0.70360	4.79020	3.28110	K562	TRA2A
CSNK1E	ENSG00000213923.6	1544.18310	1005.10640	0.61940	7.46640	5.73950	K562	TRIM56
CSNK1E	ENSG00000213923.6	1326.11380	963.08840	0.46140	3.92990	2.19130	K562	TRIP6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

4 RBPs can affect the splicing of CSNK1E :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CSNK1E	ENSG00000213923.6	chr22	-	38691392	38691453	38690347	38690540	38694790	38694939	0.49600	0.00000	0.00000	included	HepG2	HNRNPK
SE	CSNK1E	ENSG00000213923.6	chr22	-	38691392	38691453	38690347	38690540	38694790	38694939	0.11500	0.00001	0.00097	included	K562	FXR1
SE	CSNK1E	ENSG00000213923.6	chr22	-	38691392	38691453	38690347	38690540	38694790	38694939	0.05500	0.00093	0.04541	included	HepG2	PCBP1
A3SS	CSNK1E	ENSG00000213923.6	chr22	-	38698865	38699036	38698865	38699014	38699142	38699253	0.07300	0.00005	0.00044	longer	K562	AQR
A3SS	CSNK1E	ENSG00000213923.6	chr22	-	38695960	38696192	38695960	38696070	38696728	38696957	0.09000	0.00000	0.00000	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CSNK1E

General Information

Functions

Localization

Domains (AlphaFold: CSNK1E)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

45 proteins are bound to CSNK1E RNA:

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

110 RBPs can affect the gene expression of CSNK1E :

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

4 RBPs can affect the splicing of CSNK1E :

The Knockdown/knockout RNA-Seq assay for CSNK1E is not avaliable on ENCORE database.