CENPI

General Information

Gene Name : CENPI
Gene ID : ENSG00000102384.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CENPI)

Not Available

Antibody Validation

Bethyl Labs: A303-374A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CENPI	ENSG00000102384.13	11.71	13.27	12.49	ENCSR000AEF
HepG2	CENPI	ENSG00000102384.13	8.62	11.54	10.08	ENCSR985KAT
K562	CENPI	ENSG00000102384.13	9.19	10.01	9.60	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CENPI-BGKcLV08-K562	ENCSR242VKR	CENPI	K562	Released		ENCSR015KGT	CRISPR	KD% = 94.6,80.7
knockdown followed by RNA-seq	CENPI-BGHcLV09-HepG2	ENCSR603TOC	CENPI	HepG2	Released		ENCSR300EBW	CRISPR	KD% = 77.3,75.0

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CENPI	ENCAB545QJU	A303-374A	1				BGHcLV09-3, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
CENPI	K562	CRISPR			BGKcLV06-7,BGKcLV06-8	BGKcLV06-1,BGKcLV06-2	0.0,0.0	NotSatisfied	ENCODE3
CENPI	K562	CRISPR	ENCSR242VKR	ENCSR015KGT	CENPI-BGKcLV08-7,CENPI-BGKcLV08-8	NT-BGKcLV08-1,NT-BGKcLV08-2	94.6,80.7	Released	ENCODE4
CENPI	K562	CRISPR			BGKcLV08-9,BGKcLV08-10	BGKcLV08-1,BGKcLV08-2	90.2,82.0	NotSatisfied	ENCODE4
CENPI	HepG2	CRISPR			BGHcLV07-7,BGHcLV07-8	BGHcLV07-1,BGHcLV07-2	0.0,0.0	NotSatisfied	ENCODE3
CENPI	HepG2	CRISPR	ENCSR603TOC	ENCSR300EBW	CENPI-BGHcLV09-3,CENPI-BGHcLV09-4	NT-BGHcLV09-1,NT-BGHcLV09-2	77.3,75.0	Released	ENCODE4
CENPI	HepG2	CRISPR			BGHcLV10-7,BGHcLV10-8	BGHcLV10-1,BGHcLV10-2	72.8,74.3	NotSatisfied	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CENPI	Product_ID: A303-374A Lot_ID: 1 Source: Bethyl Labs Target Name: CENPI-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CENPI is not avaliable on ENCORE database.

Proteins bound to RNA

CENPI RNA is bound by 10 proteins.

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eCLIP assay for CENPI is not avaliable on ENCORE database.

10 proteins are bound to CENPI RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	100353354	100353479	+	5'-UTR,intron-Proximal	4.66204	17.76861	K562	AQR
chrX	100354046	100354107	+	intron-Distal	5.12824	12.87466	K562	PTBP1
chrX	100405897	100406015	+	intron-Distal	5.27238	9.71026	K562	TARDBP
chrX	100356121	100356277	+	CDS	3.41625	8.93089	K562	ZNF622
chrX	100353284	100353354	+	intron-Distal,intron-Proximal	5.68137	8.83608	K562	AQR
chrX	100354049	100354112	+	intron-Distal	5.11480	8.39565	HepG2	PTBP1
chrX	100355913	100356010	+	intron-Distal,intron-Proximal	4.90491	8.24653	K562	KHSRP
chrX	100405176	100405270	+	intron-Distal	4.13883	7.82201	HepG2	QKI
chrX	100354119	100354160	+	intron-Distal	3.90105	7.55880	K562	PTBP1
chrX	100353358	100353447	+	5'-UTR,intron-Proximal	4.83826	6.57024	HepG2	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 24 entries

eCLIP assay for CENPI is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CENPI is not available on ENCORE database.
134 RBPs can affect the levels of CENPI.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CENPI is not available on ENCORE database.

134 RBPs can affect the gene expression of CENPI :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CENPI	ENSG00000102384.9	51.59140	356.05370	-2.78690	43.96330	42.59360	HepG2	SRFBP1
CENPI	ENSG00000102384.9	58.17550	330.40370	-2.50570	34.98650	33.60600	HepG2	ZNF622
CENPI	ENSG00000102384.9	19.89830	206.21920	-3.37350	29.68480	28.08480	HepG2	BOP1
CENPI	ENSG00000102384.9	84.97910	303.68900	-1.83740	24.82060	23.27900	HepG2	CKAP4
CENPI	ENSG00000102384.9	25.58440	195.40960	-2.93320	24.49450	22.88770	HepG2	RPLP0
CENPI	ENSG00000102384.9	79.46310	315.23630	-1.98810	23.73290	22.51450	HepG2	RBM22
CENPI	ENSG00000102384.9	35.31230	235.43010	-2.73710	22.57320	20.74340	HepG2	RRP9
CENPI	ENSG00000102384.9	170.30340	427.06590	-1.32640	20.18010	18.87610	HepG2	PUM1
CENPI	ENSG00000102384.9	135.24450	377.15650	-1.47960	18.52130	17.19600	HepG2	ETF1
CENPI	ENSG00000102384.9	102.24790	300.42130	-1.55490	18.11320	16.63250	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 157 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CENPI is not available on ENCORE database.

3 RBPs can affect the splicing of CENPI :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CENPI	ENSG00000102384.9	chrX	+	100364445	100364580	100364461	100364580	100357262	100357400	0.22800	0.00014	0.00122	longer	K562	AQR
SE	CENPI	ENSG00000102384.9	chrX	+	100354797	100355054	100353432	100353528	100356046	100356284	-0.25400	0.00037	0.01143	excluded	HepG2	SRSF1
SE	CENPI	ENSG00000102384.9	chrX	+	100354797	100355054	100353432	100353528	100356046	100356284	-0.36500	0.00060	0.01368	excluded	K562	SRSF1
SE	CENPI	ENSG00000102384.9	chrX	+	100416516	100416558	100402931	100403150	100417821	100418425	-0.16100	0.00065	0.08007	excluded	K562	DROSHA
A3SS	CENPI	ENSG00000102384.9	chrX	+	100387153	100387296	100387178	100387296	100384970	100385062	0.05100	0.01031	0.05427	longer	K562	AQR
A3SS	CENPI	ENSG00000102384.9	chrX	+	100382443	100382654	100382486	100382654	100382126	100382255	0.06100	0.01998	0.09530	longer	K562	AQR

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CENPI

General Information

Functions

Localization

Domains (AlphaFold: CENPI)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CENPI is not avaliable on ENCORE database.

10 proteins are bound to CENPI RNA:

eCLIP assay for CENPI is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CENPI is not available on ENCORE database.

134 RBPs can affect the gene expression of CENPI :

The Knockdown/knockout RNA-Seq assay for CENPI is not available on ENCORE database.

3 RBPs can affect the splicing of CENPI :

The Knockdown/knockout RNA-Seq assay for CENPI is not avaliable on ENCORE database.