CCND3

General Information

Gene Name       : CCND3
Gene ID             : ENSG00000112576.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCND3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCND3ENSG00000112576.1211.4817.3114.39ENCSR000AEF
HepG2CCND3ENSG00000112576.1210.064.717.38ENCSR985KAT
K562CCND3ENSG00000112576.12100.6274.8387.72ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCND3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCND3 RNA is bound by 22 proteins.  







eCLIP assay for CCND3 is not avaliable on ENCORE database.





22 proteins are bound to CCND3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr64190270941902769-3'-UTR,intron-Distal,intron-Proximal3.4868518.18555K562UPF1
chr64190437741904428-3'-UTR,CDS,intron-Distal,intron-Proximal4.211194.00197K562METAP2
chr64190509441905151-3'-UTR,CDS,intron-Distal,intron-Proximal5.284596.44303K562AQR
chr64190312541903182-3'-UTR,intron-Distal,intron-Proximal3.7177916.04829K562UPF1
chr64190284041902919-3'-UTR,intron-Distal4.0671430.86075K562UPF1
chr64190312141903326-3'-UTR,intron-Distal,intron-Proximal3.0918136.96613K562FAM120A
chr64190352141903578-3'-UTR,intron-Distal,intron-Proximal3.595055.93417K562PABPC4
chr64190360441903657-3'-UTR,CDS,intron-Distal,intron-Proximal4.002624.49052K562DDX6
chr64190305241903100-3'-UTR,intron-Distal,intron-Proximal3.059149.61554K562PABPC4
chr64190339841903440-3'-UTR,intron-Distal3.6213711.17695K562UPF1
chr64190352841903597-3'-UTR,CDS,intron-Distal,intron-Proximal3.3963412.99965K562IGF2BP2
chr64190829541908373-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.469436.71722K562SF3B4
chr64190276941902840-3'-UTR,intron-Distal4.1500629.14947K562UPF1
chr64190507241905132-3'-UTR,CDS,intron-Distal3.658663.06853K562LIN28B
chr64190290741902965-3'-UTR,intron-Distal3.072456.33742K562PABPC4
chr64190827441908302-3'-UTR,5'-UTR,CDS,intron-Distal3.330686.40723K562YBX3
chr64190350841903591-3'-UTR,intron-Distal,intron-Proximal3.6937011.56537K562IGF2BP1
chr64190349241903569-3'-UTR,intron-Distal,intron-Proximal3.1607810.31074K562FAM120A
chr64190425041904290-3'-UTR,CDS,intron-Distal,intron-Proximal5.7145029.24139K562AQR
chr64190286841902944-3'-UTR,intron-Distal3.502207.61013K562DDX6
chr64190362141903672-3'-UTR,CDS,intron-Distal,intron-Proximal3.379857.88790K562DDX55
chr64190350341903527-3'-UTR,intron-Distal4.2071010.50859K562UPF1
chr64190352741903572-3'-UTR,intron-Distal,intron-Proximal3.6544614.49294K562UPF1
chr64190420741904290-3'-UTR,CDS,intron-Distal,intron-Proximal3.672655.51703K562BUD13
chr64190305541903106-3'-UTR,intron-Distal,intron-Proximal3.6404412.77363K562UPF1
chr64190420141904250-3'-UTR,intron-Distal,intron-Proximal5.1292412.70303K562AQR
chr64190270341902792-3'-UTR,intron-Distal,intron-Proximal3.6481016.39442K562PUM2
chr64190298441903032-3'-UTR,intron-Distal3.229223.02543K562APOBEC3C
chr64190291941903028-3'-UTR,intron-Distal4.3299633.54298K562UPF1
chr64190344041903487-3'-UTR,intron-Distal3.6549311.85767K562UPF1
chr64190300041903031-3'-UTR,intron-Distal3.604267.54411K562PABPC4
chr64190296441903038-3'-UTR,intron-Distal3.0233310.82880K562DDX55
chr64190508441905133-3'-UTR,CDS,intron-Distal,intron-Proximal4.884476.26177K562FMR1
chr64190284941902907-3'-UTR,intron-Distal3.980879.93776K562PABPC4
chr64190271541902754-3'-UTR,intron-Distal,intron-Proximal4.047508.05708K562PABPC4
chr64190400641904084-3'-UTR,intron-Distal3.643399.53666K562AQR
chr64190507141905141-3'-UTR,CDS,intron-Distal,intron-Proximal4.247884.81549K562GPKOW
chr64190932841909395-5'-UTR,CDS,intron-Distal,intron-Proximal3.126234.29961K562METAP2
chr64190945941909513-5'-UTR,intron-Distal,intron-Proximal3.946175.82148K562DDX3X
chr64190914641909189-5'-UTR,intron-Distal4.973856.22530K562AQR
chr64190822741908274-CDS,intron-Distal,intron-Proximal3.7695317.66001K562YBX3
chr64190429041904297-CDS,intron-Distal,intron-Proximal5.8140419.62251K562AQR
chr64190376241903800-CDS,intron-Distal3.950886.80869K562AQR
chr64190380041903873-CDS,intron-Distal,intron-Proximal6.4697937.50196K562AQR
chr64201431642014410-intron-Distal4.447354.13603K562TARDBP
chr64198617541986244-intron-Distal5.341235.68502HepG2PRPF8
chr64190806341908077-intron-Distal,intron-Proximal6.3854117.76631K562AQR
chr64190808041908108-intron-Distal,intron-Proximal5.3957916.94745K562AQR
chr64198617541986209-intron-Distal4.089653.33755HepG2RBM22
chr64190387841903898-intron-Distal,intron-Proximal3.810835.70278K562AQR
chr64190492641904972-intron-Distal,intron-Proximal5.323596.83960K562AQR
chr64193196441932050-intron-Distal5.326158.24016K562AGGF1
chr64190475641904785-intron-Distal4.045393.12843K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCND3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCND3 is not available on ENCORE database.

  • 128 RBPs can affect the levels of CCND3.  








The Knockdown/knockout RNA-Seq assay for CCND3 is not available on ENCORE database.





128 RBPs can affect the gene expression of CCND3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCND3ENSG00000112576.8226.38550102.340901.145309.092108.11960HepG2ACO1
CCND3ENSG00000112576.8432.0156070.461902.6161030.7852029.25160HepG2AKAP1
CCND3ENSG00000112576.8152.7725053.879401.503507.619705.95360HepG2AKAP8
CCND3ENSG00000112576.8104.2072058.298100.837802.372601.64180HepG2ASCC1
CCND3ENSG00000112576.843.94810104.51020-1.249804.182402.48210HepG2ATP5C1
CCND3ENSG00000112576.8363.65890193.920700.907008.978007.85820HepG2AUH
CCND3ENSG00000112576.8146.6559086.743000.757503.037301.74680HepG2BUD13
CCND3ENSG00000112576.8313.24460185.275900.757503.801502.64530HepG2CCAR1
CCND3ENSG00000112576.8173.51470102.317100.761902.954602.27190HepG2CKAP4
CCND3ENSG00000112576.8199.2957062.256301.678509.088407.72840HepG2CNOT7
CCND3ENSG00000112576.876.61360190.41750-1.313507.327806.25130HepG2CPSF6
CCND3ENSG00000112576.8402.39810116.485501.7884029.0694027.44590HepG2CELF1
CCND3ENSG00000112576.8160.1954082.114400.964004.655003.17320HepG2DDX1
CCND3ENSG00000112576.8115.5179065.290300.823102.602501.94140HepG2DDX21
CCND3ENSG00000112576.8446.6545067.490202.7263037.9277035.89670HepG2DDX3X
CCND3ENSG00000112576.8306.88340170.666700.846403.778802.89130HepG2DDX55
CCND3ENSG00000112576.8164.6388057.992001.505304.161103.41540HepG2DDX6
CCND3ENSG00000112576.841.3587077.65930-0.909002.389301.47750HepG2DHX30
CCND3ENSG00000112576.8153.9910079.805800.948205.222204.37160HepG2DNAJC2
CCND3ENSG00000112576.8133.4768070.263400.925602.878701.94060HepG2EEF2
CCND3ENSG00000112576.8115.4528058.559400.979203.278902.07240HepG2EFTUD2
CCND3ENSG00000112576.8163.3609087.823300.895304.274002.82960HepG2EIF2S2
CCND3ENSG00000112576.8128.8765057.028801.176102.638601.75390HepG2EIF3D
CCND3ENSG00000112576.8224.3574059.975101.9033011.8637010.48940HepG2EIF4B
CCND3ENSG00000112576.8149.54980100.003900.580502.038801.32390HepG2EWSR1
CCND3ENSG00000112576.8281.92860116.848901.270608.103106.86260HepG2FIP1L1
CCND3ENSG00000112576.863.35800142.03560-1.164704.921003.26280HepG2FKBP4
CCND3ENSG00000112576.8212.95940117.173800.861803.273301.46630HepG2FMR1
CCND3ENSG00000112576.8152.1128062.158901.291005.881004.89720HepG2FXR1
CCND3ENSG00000112576.8132.4548057.648901.200002.387801.76670HepG2G3BP1
CCND3ENSG00000112576.8115.8319050.774001.189804.538303.38240HepG2GEMIN5
CCND3ENSG00000112576.8141.5352058.547901.273402.907401.86210HepG2GNB2L1
CCND3ENSG00000112576.8126.1290057.640901.129604.113202.75860HepG2GRSF1
CCND3ENSG00000112576.8181.7669090.419101.007304.644303.76140HepG2HNRNPC
CCND3ENSG00000112576.8145.62360216.73390-0.573702.652601.94930HepG2HNRNPF
CCND3ENSG00000112576.8120.9448058.404201.050103.586602.79730HepG2HNRNPK
CCND3ENSG00000112576.861.97210206.00890-1.7330011.4022010.23240HepG2HNRNPLL
CCND3ENSG00000112576.8147.5517080.659500.871203.874102.76890HepG2HNRNPM
CCND3ENSG00000112576.8172.2775089.821300.939505.407504.58190HepG2HNRNPU
CCND3ENSG00000112576.8151.8988058.613401.373706.017204.22290HepG2HSPD1
CCND3ENSG00000112576.8150.74230213.42400-0.501601.985601.36490HepG2IGF2BP1
CCND3ENSG00000112576.8138.4855058.594301.240805.382204.46830HepG2IGF2BP2
CCND3ENSG00000112576.8126.5060058.592001.110302.867201.59650HepG2KRR1
CCND3ENSG00000112576.8293.84470195.672900.586502.445901.66840HepG2LARP4
CCND3ENSG00000112576.8151.1207057.434301.395602.555701.46630HepG2LARP7
CCND3ENSG00000112576.8146.6069062.180701.237305.459904.54720HepG2MAGOH
CCND3ENSG00000112576.8310.1577062.524902.3104021.8859020.24870HepG2MATR3
CCND3ENSG00000112576.8159.2601059.679101.416004.645603.30410HepG2METAP2
CCND3ENSG00000112576.8227.4676094.631401.265208.858407.48820HepG2MSI2
CCND3ENSG00000112576.893.61230210.06110-1.166004.772403.47890HepG2MTPAP
CCND3ENSG00000112576.8335.4973063.994502.3902025.7791023.98420HepG2NCBP2
CCND3ENSG00000112576.8294.41920156.795300.908903.275202.07690HepG2NONO
CCND3ENSG00000112576.849.43100182.65260-1.8856010.968409.56430HepG2NSUN2
CCND3ENSG00000112576.8135.7266056.590301.262006.379205.51690HepG2PCBP1
CCND3ENSG00000112576.851.07360111.52620-1.126704.838603.84670HepG2PRPF4
CCND3ENSG00000112576.8295.4583057.579002.3592030.4703029.04340HepG2PTBP1
CCND3ENSG00000112576.8196.57470118.537100.729603.617602.94780HepG2PUF60
CCND3ENSG00000112576.8326.66330125.843301.3761018.0575016.81180HepG2PUM1
CCND3ENSG00000112576.8194.04300104.240600.896405.400004.59120HepG2PUS1
CCND3ENSG00000112576.8442.84820186.093101.250709.312008.48900HepG2RBM22
CCND3ENSG00000112576.8209.5776064.083001.7094012.6503011.64880HepG2NELFE
CCND3ENSG00000112576.899.4051059.678900.736002.007701.47130HepG2RECQL
CCND3ENSG00000112576.8156.24630233.43010-0.579202.213201.59320HepG2RPLP0
CCND3ENSG00000112576.8207.9198055.501001.9053014.6111013.34750HepG2RPS19
CCND3ENSG00000112576.8152.0867063.862001.251802.587301.81210HepG2RPS2
CCND3ENSG00000112576.8155.8986065.213901.257302.573301.53940HepG2RPS5
CCND3ENSG00000112576.8116.1939055.688901.061002.742201.80750HepG2SERBP1
CCND3ENSG00000112576.8320.89650102.654901.6442014.4002012.79440HepG2SF3A3
CCND3ENSG00000112576.8103.04500203.91900-0.984705.090404.15600HepG2SF3B1
CCND3ENSG00000112576.8200.4889059.953901.7415013.0279011.89380HepG2SF3B4
CCND3ENSG00000112576.8131.5681045.330101.537203.432401.77390HepG2SFPQ
CCND3ENSG00000112576.856.89000113.68110-0.998703.678502.88860HepG2SLBP
CCND3ENSG00000112576.8179.6093093.282300.945105.488804.63500HepG2SMN1
CCND3ENSG00000112576.8186.6592061.888701.592607.374305.76180HepG2SMNDC1
CCND3ENSG00000112576.8290.73980210.184400.468002.427701.94790HepG2SRFBP1
CCND3ENSG00000112576.893.42100162.52280-0.798803.341501.55320HepG2SRP68
CCND3ENSG00000112576.8223.3070062.576201.8352015.2592014.34020HepG2SRSF1
CCND3ENSG00000112576.8296.22340117.051301.3394014.5196013.24610HepG2SRSF5
CCND3ENSG00000112576.8135.04200212.92340-0.656903.263002.51470HepG2SRSF7
CCND3ENSG00000112576.8103.3452050.906701.021402.028901.54180HepG2SRSF9
CCND3ENSG00000112576.895.02110182.48840-0.941505.367304.69950HepG2SSB
CCND3ENSG00000112576.8110.4754058.457600.918202.982801.65250HepG2SSRP1
CCND3ENSG00000112576.8227.39510133.108300.772505.029704.23360HepG2SUCLG1
CCND3ENSG00000112576.8168.7583087.279700.951104.767304.14750HepG2TIAL1
CCND3ENSG00000112576.8158.6336088.058300.849104.204903.53810HepG2TRIM56
CCND3ENSG00000112576.893.8913045.310001.051103.288001.57350HepG2TROVE2
CCND3ENSG00000112576.8153.6104099.991700.619302.078301.52590HepG2U2AF1
CCND3ENSG00000112576.8112.7965048.464401.218602.289401.40310HepG2U2AF2
CCND3ENSG00000112576.8223.23350122.609200.864402.765101.92870HepG2UBE2L3
CCND3ENSG00000112576.8184.7857087.895401.071906.406905.55850HepG2UTP3
CCND3ENSG00000112576.891.49140167.22080-0.870003.813802.97050HepG2XRN2
CCND3ENSG00000112576.8224.68300110.063801.029507.489906.47340HepG2ZC3H8
CCND3ENSG00000112576.8144.49350100.126000.529101.945501.46490HepG2ZNF622
CCND3ENSG00000112576.85228.566403642.190300.5215015.3844014.15980K562AGGF1
CCND3ENSG00000112576.86071.482003789.852300.679802.872202.20660K562AKAP8L
CCND3ENSG00000112576.82910.842304153.43970-0.512906.657405.81070K562AQR
CCND3ENSG00000112576.83129.189503976.44500-0.345703.377702.35920K562ATP5C1
CCND3ENSG00000112576.82575.222102077.326500.309904.648103.38760K562BCLAF1
CCND3ENSG00000112576.82759.251302170.770100.346003.180801.79300K562CIRBP
CCND3ENSG00000112576.82110.822001575.961900.421505.404203.84830K562CSTF2
CCND3ENSG00000112576.82888.254702236.418200.368904.329402.98330K562DDX3X
CCND3ENSG00000112576.82829.037201942.499500.542304.559802.40570K562DDX51
CCND3ENSG00000112576.81749.753302318.33300-0.405903.899502.28550K562DNAJC21
CCND3ENSG00000112576.82987.876301861.015000.682906.102404.19400K562EEF2
CCND3ENSG00000112576.82485.467901797.840700.467204.473103.29560K562EFTUD2
CCND3ENSG00000112576.84647.146003341.905900.4756010.382309.12530K562EIF2S2
CCND3ENSG00000112576.81484.274702336.50500-0.654609.630908.08920K562EIF4A3
CCND3ENSG00000112576.82838.025302104.149500.431606.895204.94660K562EIF4B
CCND3ENSG00000112576.83960.567604588.41620-0.212302.534801.63050K562EIF4G2
CCND3ENSG00000112576.82844.236002039.530800.479708.310305.81650K562EWSR1
CCND3ENSG00000112576.83016.514102488.271700.277602.255701.48960K562FIP1L1
CCND3ENSG00000112576.81480.696302112.12290-0.512403.099501.89380K562FKBP4
CCND3ENSG00000112576.83196.593602429.866900.395605.650704.82980K562FXR1
CCND3ENSG00000112576.8584.164401165.34410-0.996305.416404.35070K562G3BP2
CCND3ENSG00000112576.82407.322402020.965700.252301.997901.32000K562GPKOW
CCND3ENSG00000112576.83761.001604453.31290-0.243802.191301.51400K562GRSF1
CCND3ENSG00000112576.81923.689402430.84320-0.337603.509402.84700K562HNRNPC
CCND3ENSG00000112576.83700.369502887.207200.357903.907001.66050K562HNRNPH1
CCND3ENSG00000112576.82605.316602046.630700.348102.477601.59920K562HNRNPM
CCND3ENSG00000112576.83368.109302026.223000.733006.142804.35280K562IGF2BP2
CCND3ENSG00000112576.81571.474402730.45300-0.797005.457103.41830K562ILF2
CCND3ENSG00000112576.81246.101402252.39190-0.8540012.514009.65720K562ILF3
CCND3ENSG00000112576.85297.183104022.021900.397204.473003.38690K562KIF1C
CCND3ENSG00000112576.85331.633404505.674700.242702.222901.42290K562MBNL1
CCND3ENSG00000112576.82312.669303388.99850-0.5513015.4204013.70950K562MTPAP
CCND3ENSG00000112576.84389.277603158.148000.474803.599702.56080K562NAA15
CCND3ENSG00000112576.84026.974005019.08680-0.317703.002401.44060K562NOL12
CCND3ENSG00000112576.83157.371803765.39380-0.254105.785704.76150K562NSUN2
CCND3ENSG00000112576.84264.547202284.853300.900205.425603.90890K562PABPN1
CCND3ENSG00000112576.83665.114704714.75820-0.363305.225503.33250K562PNPT1
CCND3ENSG00000112576.83505.908602068.189300.7613013.2891011.88810K562PTBP1
CCND3ENSG00000112576.83711.287105325.26900-0.5209010.299408.16370K562PUM1
CCND3ENSG00000112576.84374.865605217.37960-0.254103.566402.47680K562PUM2
CCND3ENSG00000112576.86791.025303758.578500.853306.078905.31220K562PUS1
CCND3ENSG00000112576.85853.481303662.098100.6765017.3446015.83880K562RBM15
CCND3ENSG00000112576.82587.236901982.699100.383803.763202.77020K562RBM22
CCND3ENSG00000112576.82638.169902086.578300.338302.762501.67150K562NELFE
CCND3ENSG00000112576.81746.921501266.101500.464304.048002.80630K562RPS3
CCND3ENSG00000112576.83539.918802385.857200.569108.983707.09590K562SAFB
CCND3ENSG00000112576.82467.427801885.728700.387803.819402.55640K562SRFBP1
CCND3ENSG00000112576.82501.824802027.607000.303102.968002.23810K562SRSF1
CCND3ENSG00000112576.81721.314601222.151200.494005.820104.18830K562SRSF4
CCND3ENSG00000112576.81409.602101915.14960-0.442204.346602.98320K562SRSF5
CCND3ENSG00000112576.82293.400803264.78250-0.509506.079504.00680K562SSRP1
CCND3ENSG00000112576.83184.386802685.537200.245702.395001.63200K562SYNCRIP
CCND3ENSG00000112576.8577.405501143.82780-0.986202.921001.40290K562TAF15
CCND3ENSG00000112576.83443.945602051.872400.747008.213806.91180K562TARDBP
CCND3ENSG00000112576.82533.316601979.314700.355903.955602.95290K562TIA1
CCND3ENSG00000112576.82769.461801942.765400.511405.115103.53850K562TRA2A
CCND3ENSG00000112576.83097.710002227.851400.475403.594702.49010K562TRIM56
CCND3ENSG00000112576.84886.503204144.138300.237603.773502.28020K562TROVE2
CCND3ENSG00000112576.8763.508201128.32360-0.563502.911801.78570K562U2AF1
CCND3ENSG00000112576.8851.000401165.72930-0.454002.154001.44550K562U2AF2
CCND3ENSG00000112576.82845.283001792.472100.666508.575706.70970K562UCHL5
CCND3ENSG00000112576.82757.148903992.53390-0.5341014.3358012.85540K562UPF1
CCND3ENSG00000112576.82857.992003633.55470-0.346402.681801.50040K562UTP3
CCND3ENSG00000112576.82776.967603416.27380-0.298903.023402.11030K562WDR3
CCND3ENSG00000112576.83123.730003552.60630-0.185602.555901.73980K562WDR43
CCND3ENSG00000112576.83751.104804679.11670-0.318903.178602.24610K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCND3 is not available on ENCORE database.





3 RBPs can affect the splicing of CCND3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCND3ENSG00000112576.8chr6-419081074190832341904972419051324190918941909191-0.051000.000500.01192excludedK562SRSF1
SECCND3ENSG00000112576.8chr6-419042964190443341902693419038454190497241905132-0.053000.000200.00550excludedK562SRSF1
SECCND3ENSG00000112576.8chr6-419081074190832341904972419051324201623842016446-0.060000.003760.03680excludedK562AQR
SECCND3ENSG00000112576.8chr6-419042964190447141902670419038454190497241905132-0.082000.004400.04182excludedK562AQR
SECCND3ENSG00000112576.8chr6-419042964190443341902693419038454190497241905132-0.110000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCND3 is not avaliable on ENCORE database.