WHSC1L1

General Information

Gene Name : WHSC1L1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: WHSC1L1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for WHSC1L1 is not avaliable on ENCORE database.

Proteins bound to RNA

WHSC1L1 RNA is bound by 29 proteins.

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eCLIP assay for WHSC1L1 is not avaliable on ENCORE database.

29 proteins are bound to WHSC1L1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	38233035	38233166	-	intron-Distal	5.94589	24.14083	K562	QKI
chr8	38161845	38161936	-	intron-Distal	4.68700	17.54359	K562	QKI
chr8	38236575	38236658	-	intron-Distal	4.72056	17.23880	K562	QKI
chr8	38161990	38162085	-	intron-Distal,intron-Proximal	4.33978	16.92245	K562	EFTUD2
chr8	38162051	38162116	-	CDS,intron-Distal,intron-Proximal	4.29715	16.44941	K562	TIA1
chr8	38202690	38202876	-	intron-Distal	6.39134	16.36967	HepG2	PCBP2
chr8	38146100	38146193	-	CDS,intron-Distal	4.41291	14.47660	K562	UCHL5
chr8	38178513	38178561	-	3'-UTR,intron-Distal,intron-Proximal	4.24810	13.66013	K562	AQR
chr8	38172949	38173049	-	CDS,intron-Distal	3.85687	13.60263	K562	ZNF622
chr8	38205364	38205433	-	CDS,intron-Distal	4.73148	13.45780	K562	IGF2BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 100 entries

eCLIP assay for WHSC1L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for WHSC1L1 is not available on ENCORE database.
120 RBPs can affect the levels of WHSC1L1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for WHSC1L1 is not available on ENCORE database.

120 RBPs can affect the gene expression of WHSC1L1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
WHSC1L1	ENSG00000147548.12	673.37720	1774.33890	-1.39780	33.82530	31.71440	HepG2	HNRNPC
WHSC1L1	ENSG00000147548.12	1229.87660	2206.86280	-0.84350	28.48530	26.72630	HepG2	UPF1
WHSC1L1	ENSG00000147548.12	1458.70410	2427.12200	-0.73460	28.00170	26.72460	HepG2	ZNF622
WHSC1L1	ENSG00000147548.12	814.94570	1712.71530	-1.07150	26.89550	25.63290	HepG2	TIAL1
WHSC1L1	ENSG00000147548.12	2737.67180	1533.50400	0.83600	23.71970	22.30240	HepG2	TAF15
WHSC1L1	ENSG00000147548.12	1169.75780	1902.68260	-0.70180	19.42750	18.01710	HepG2	CKAP4
WHSC1L1	ENSG00000147548.12	800.21230	1595.17940	-0.99530	18.50780	17.07730	HepG2	HNRNPA1
WHSC1L1	ENSG00000147548.12	981.89480	1566.08030	-0.67350	17.99100	16.46640	HepG2	DNAJC2
WHSC1L1	ENSG00000147548.12	1249.12750	1938.29030	-0.63390	16.67690	15.39100	HepG2	PUS1
WHSC1L1	ENSG00000147548.12	840.97490	1597.95500	-0.92610	16.43660	14.95150	HepG2	DDX21
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 132 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for WHSC1L1 is not available on ENCORE database.

8 RBPs can affect the splicing of WHSC1L1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	WHSC1L1	ENSG00000147548.12	chr8	-	38156961	38157108	38153313	38153470	38162104	38162275	-0.52200	0.00000	0.00052	excluded	HepG2	AKAP1
A5SS	WHSC1L1	ENSG00000147548.12	chr8	-	38138984	38139101	38139017	38139101	38137057	38137199	-0.28200	0.00000	0.00127	shorter	K562	KHSRP
A3SS	WHSC1L1	ENSG00000147548.12	chr8	-	38173429	38173586	38173429	38173560	38176412	38176458	0.17400	0.00001	0.00008	longer	K562	AQR
SE	WHSC1L1	ENSG00000147548.12	chr8	-	38156961	38157108	38153313	38153470	38162104	38162275	-0.23900	0.00010	0.00588	excluded	K562	HNRNPU
SE	WHSC1L1	ENSG00000147548.12	chr8	-	38184247	38184374	38178589	38178690	38186895	38187411	-0.06800	0.00012	0.00195	excluded	K562	AQR
SE	WHSC1L1	ENSG00000147548.12	chr8	-	38158371	38158440	38156961	38157108	38162104	38162275	0.08100	0.00013	0.01373	included	K562	HNRNPL
SE	WHSC1L1	ENSG00000147548.12	chr8	-	38138769	38138882	38137057	38137199	38138984	38139101	0.25600	0.00025	0.00671	included	K562	SRSF1
A3SS	WHSC1L1	ENSG00000147548.12	chr8	-	38194822	38195032	38194822	38194985	38196053	38196125	0.05100	0.00039	0.00298	longer	K562	AQR
A5SS	WHSC1L1	ENSG00000147548.12	chr8	-	38138984	38139101	38139017	38139101	38137057	38137199	0.38200	0.00047	0.04528	longer	HepG2	RBM22
A3SS	WHSC1L1	ENSG00000147548.12	chr8	-	38153313	38153497	38153313	38153470	38156961	38157108	0.17900	0.00173	0.07999	longer	K562	SF3B4

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

WHSC1L1

General Information

Functions

Localization

Domains (AlphaFold: WHSC1L1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for WHSC1L1 is not avaliable on ENCORE database.

29 proteins are bound to WHSC1L1 RNA:

eCLIP assay for WHSC1L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for WHSC1L1 is not available on ENCORE database.

120 RBPs can affect the gene expression of WHSC1L1 :

The Knockdown/knockout RNA-Seq assay for WHSC1L1 is not available on ENCORE database.

8 RBPs can affect the splicing of WHSC1L1 :

The Knockdown/knockout RNA-Seq assay for WHSC1L1 is not avaliable on ENCORE database.