TRIM28

General Information

Gene Name       : TRIM28
Gene ID             : ENSG00000130726.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TRIM28)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM28ENSG00000130726.1193.05190.77141.91ENCSR000AEF
HepG2TRIM28ENSG00000130726.11592.02299.00445.51ENCSR985KAT
K562TRIM28ENSG00000130726.11552.05430.78491.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
TRIM28Ribo-STAMP-293TshRNATRIM28-BGRSLV06-43,TRIM28-BGRSLV06-44NT-BGRSLV06-1,NT-BGRSLV06-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM28 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM28 RNA is bound by 50 proteins.  







eCLIP assay for TRIM28 is not avaliable on ENCORE database.





50 proteins are bound to TRIM28 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195906195059062009+3'-UTR3.1373959.13720K562PABPC4
chr195906200559062042+3'-UTR4.1713333.58044HepG2PCBP2
chr195906205659062088+3'-UTR,polyA_site6.4124544.33447K562PABPC4
chr195906200959062047+3'-UTR3.4173449.29730K562PABPC4
chr195906193759062005+3'-UTR4.6094764.65785HepG2PCBP2
chr195906191259062034+3'-UTR,CDS5.31370400.00000K562PCBP1
chr195906195059062039+3'-UTR5.0451131.62417HepG2LARP4
chr195906193159062028+3'-UTR4.9589625.43622HepG2PCBP1
chr195906187759061946+3'-UTR,CDS4.6078718.81199HepG2LARP4
chr195906189159061950+3'-UTR,CDS3.2543723.74275K562PABPC4
chr195905609059056117+5'-UTR,intron-Distal3.7985411.16713K562FXR2
chr195905594459056037+5'-UTR,intron-Distal,intron-Proximal4.9504952.56673K562GEMIN5
chr195905585659055928+5'-UTR,intron-Distal3.2616414.55273K562RBM15
chr195905587059055908+5'-UTR,intron-Distal3.2741516.92548K562RPS3
chr195905637059056435+5'-UTR,CDS,intron-Distal4.1142635.87906K562GEMIN5
chr195905642359056462+5'-UTR,CDS,intron-Distal3.5879016.26197K562FMR1
chr195905638659056430+5'-UTR,CDS,intron-Distal4.177648.88468K562RBM15
chr195905584459055944+5'-UTR,intron-Distal,intron-Proximal4.1797676.91062K562GEMIN5
chr195905668359056732+5'-UTR,intron-Distal,intron-Proximal3.359905.56153K562GTF2F1
chr195905638259056428+5'-UTR,CDS,intron-Distal3.056276.54492K562PHF6
chr195905633159056378+5'-UTR,CDS,intron-Distal4.7513424.41939K562FMR1
chr195905607159056090+5'-UTR,intron-Distal3.6658912.12151K562FXR2
chr195905598559056036+5'-UTR,intron-Distal,intron-Proximal3.299319.69590K562HNRNPM
chr195905684659056879+5'-UTR,CDS,intron-Distal3.0788727.01043K562YBX3
chr195905612059056144+5'-UTR,CDS,intron-Distal4.1005213.01759K562FXR2
chr195905604459056107+5'-UTR,intron-Distal3.0711312.29443K562FMR1
chr195905605659056071+5'-UTR,intron-Distal3.7445312.85667K562FXR2
chr195905638459056460+5'-UTR,CDS,intron-Distal3.2007419.64382K562DHX30
chr195905582559055904+5'-UTR,intron-Distal4.212967.61493K562EIF3G
chr195905597459056042+5'-UTR,intron-Distal,intron-Proximal3.1628518.67117HepG2DDX3X
chr195905595759055994+5'-UTR,intron-Distal,intron-Proximal4.314995.63180K562AATF
chr195905674959056808+5'-UTR,CDS,intron-Distal,intron-Proximal5.437009.24065HepG2AQR
chr195905582359055926+5'-UTR,intron-Distal3.8143936.78278K562DDX3X
chr195905678559056819+5'-UTR,CDS,intron-Distal,intron-Proximal3.0373610.13160K562BUD13
chr195905627559056359+5'-UTR,CDS,intron-Distal,intron-Proximal3.1573018.22474HepG2RPS3
chr195905582759055859+5'-UTR,intron-Distal4.6460223.33089K562RPS3
chr195905632859056370+5'-UTR,CDS,intron-Distal3.5322111.21695K562GEMIN5
chr195905632359056364+5'-UTR,CDS,intron-Distal3.3663914.35963K562RPS3
chr195905585359055928+5'-UTR,intron-Distal3.211497.22785HepG2RBM15
chr195905591959056047+5'-UTR,intron-Distal,intron-Proximal3.2682814.23707K562DROSHA
chr195905594559055968+5'-UTR,intron-Distal,intron-Proximal4.7365715.08342K562FXR2
chr195905594059056031+5'-UTR,intron-Distal,intron-Proximal3.8912423.59258HepG2RPS3
chr195905587359055918+5'-UTR,intron-Distal3.7451616.33152K562FXR2
chr195905586459055938+5'-UTR,intron-Distal,intron-Proximal3.4057214.38706K562HNRNPM
chr195905606059056102+5'-UTR,intron-Distal3.6663119.04355HepG2RPS3
chr195905640559056452+5'-UTR,CDS,intron-Distal3.7369017.70331K562FXR2
chr195905677759056824+5'-UTR,CDS,intron-Distal,intron-Proximal3.8286616.41485K562GEMIN5
chr195905596359056035+5'-UTR,intron-Distal,intron-Proximal3.032043.97151HepG2EIF3H
chr195905655959056645+5'-UTR,intron-Distal,intron-Proximal3.199654.25828HepG2NKRF
chr195905611259056162+5'-UTR,CDS,intron-Distal3.6958520.43459HepG2RPS3
chr195905595359056003+5'-UTR,intron-Distal,intron-Proximal4.5745030.49979K562RPS3
chr195905667659056770+5'-UTR,intron-Distal,intron-Proximal3.541559.82258K562CSTF2T
chr195905632259056371+5'-UTR,CDS,intron-Distal3.8906415.76787K562FXR2
chr195905667359056767+5'-UTR,intron-Distal,intron-Proximal4.7724415.31049HepG2PRPF4
chr195905604559056117+5'-UTR,intron-Distal3.7412915.13818K562PCBP1
chr195905612259056143+5'-UTR,CDS,intron-Distal4.9165013.80436K562FMR1
chr195905606859056098+5'-UTR,intron-Distal4.0722710.58565K562RPS3
chr195905679259056799+5'-UTR,CDS,intron-Distal3.066756.48096HepG2G3BP1
chr195905679959056813+5'-UTR,CDS,intron-Distal3.322477.40596HepG2G3BP1
chr195905677559056798+5'-UTR,CDS,intron-Distal,intron-Proximal4.8226410.60410K562AQR
chr195905604659056056+5'-UTR,intron-Distal3.666268.98868K562FXR2
chr195905582459055864+5'-UTR,intron-Distal3.434739.13817K562HNRNPM
chr195905966659059689+CDS4.4724825.15921K562FXR2
chr195906041659060458+CDS4.3943216.31254K562FXR2
chr195906077059060820+CDS3.3734413.24885K562METAP2
chr195906032659060379+CDS,intron-Proximal3.4146218.26558HepG2PRPF8
chr195906183659061888+CDS4.1162745.14467K562PABPC4
chr195905717159057199+CDS,intron-Distal3.093426.85736K562METAP2
chr195906183159061877+CDS3.384747.56719HepG2LARP4
chr195905726059057263+CDS,intron-Distal3.0391618.82010K562YBX3
chr195905922759059256+CDS4.4522812.27005K562GRWD1
chr195905995859059973+CDS,intron-Proximal6.2555719.08167HepG2PRPF8
chr195906155259061607+CDS3.5206411.56416K562METAP2
chr195906051159060554+CDS4.2391921.24246K562FXR2
chr195906110359061146+CDS,intron-Proximal4.4279219.73350HepG2G3BP1
chr195906008759060119+CDS,intron-Proximal5.303936.28153HepG2SUPV3L1
chr195906050659060551+CDS3.393743.18818K562FXR1
chr195905626559056296+CDS,intron-Distal,intron-Proximal4.4417715.22963K562FXR2
chr195905940259059438+CDS3.9190114.76331K562FMR1
chr195905995659059974+CDS,intron-Proximal4.7707412.53287HepG2AQR
chr195906021259060236+CDS,intron-Proximal3.6588216.13736K562AQR
chr195906070059060751+CDS3.0720010.31146K562METAP2
chr195905614359056170+CDS,intron-Distal4.7619117.07122K562FMR1
chr195906070659060740+CDS3.423015.47184K562PHF6
chr195906174759061778+CDS4.2667551.51703K562PABPC4
chr195905915859059190+CDS,intron-Proximal3.112447.12743HepG2G3BP1
chr195906111559061135+CDS3.493254.28624HepG2DDX55
chr195905716359057197+CDS,intron-Distal4.9226933.97163K562FMR1
chr195906183759061886+CDS3.4385015.78357K562RPS3
chr195905948559059513+CDS3.380464.53300K562LIN28B
chr195905726259057276+CDS,intron-Distal,intron-Proximal5.3562535.47236K562AQR
chr195906035559060374+CDS3.753988.85114K562RPS3
chr195906098159061017+CDS4.041198.43476K562RPS3
chr195906052359060567+CDS3.338616.81381K562PHF6
chr195906139459061416+CDS,intron-Proximal4.2230115.49797HepG2PRPF8
chr195906070159060735+CDS3.886673.36587K562FXR1
chr195906008859060122+CDS,intron-Proximal5.4806641.59969K562AQR
chr195905617159056208+CDS,intron-Distal,intron-Proximal3.383335.85859K562DHX30
chr195905966659059686+CDS3.9526120.60034K562FMR1
chr195906110359061133+CDS,intron-Proximal3.8436616.85093K562FXR2
chr195905919059059253+CDS3.1093010.87504HepG2G3BP1
chr195905871659058783+CDS,intron-Proximal6.3920571.29557K562AQR
chr195906010459060149+CDS,intron-Proximal3.1737018.61645K562PRPF8
chr195906053659060541+CDS3.946744.79259K562RPS3
chr195905940359059439+CDS4.2897419.33266K562FXR2
chr195906013359060142+CDS3.672499.12507K562FMR1
chr195906021859060278+CDS,intron-Proximal3.0709728.56984K562PRPF8
chr195906010359060141+CDS,intron-Proximal3.0507611.78891K562BUD13
chr195906110059061152+CDS,intron-Proximal3.6298315.03706K562DDX24
chr195906069759060737+CDS,intron-Proximal3.345988.13542HepG2SUB1
chr195906087159060899+CDS5.3096220.75815K562FXR2
chr195906077359060821+CDS3.9249322.95735K562FMR1
chr195906078059060813+CDS3.5712815.35944K562RPS3
chr195906093359060942+CDS3.567476.70085HepG2PPIG
chr195905985759059879+CDS3.5064210.55735K562FMR1
chr195905940059059437+CDS,intron-Proximal3.2714512.62494K562BUD13
chr195906052059060549+CDS3.445738.52291HepG2G3BP1
chr195906031959060372+CDS,intron-Proximal3.3884914.95179HepG2BUD13
chr195905685459056898+CDS,intron-Distal3.519453.49777K562ZNF800
chr195905871759058771+CDS,intron-Proximal6.0674332.36178HepG2AQR
chr195906071059060762+CDS3.8541511.34132K562ZC3H11A
chr195906163959061651+CDS4.0904132.45790K562PABPC4
chr195906012359060149+CDS,intron-Proximal5.4225053.97404K562EFTUD2
chr195906086059060902+CDS4.1929516.64193K562FMR1
chr195906005259060129+CDS,intron-Proximal6.3289938.50368HepG2EFTUD2
chr195906040159060435+CDS4.2652714.72395K562FMR1
chr195906174359061747+CDS,intron-Proximal4.3903920.82721K562PABPC4
chr195906182859061876+CDS3.5867614.92507K562PCBP1
chr195905617359056198+CDS,intron-Distal5.0805316.66678K562FMR1
chr195906096559061009+CDS3.3712614.07434K562LIN28B
chr195905975359059769+CDS5.225109.56232HepG2G3BP1
chr195906069859060758+CDS3.2857413.67176HepG2G3BP1
chr195906153559061557+CDS3.1569710.67654K562PCBP1
chr195906110359061129+CDS,intron-Proximal3.2665913.11770HepG2SUB1
chr195905939159059446+CDS,intron-Proximal3.5134416.65606K562SF3B4
chr195905873059058765+CDS,intron-Proximal6.1195317.10309HepG2PRPF8
chr195905878759058807+CDS5.601207.54335HepG2SUB1
chr195906094759060965+CDS3.464685.15600K562LIN28B
chr195906183559061873+CDS3.8595315.47870K562FXR2
chr195905716759057185+CDS,intron-Distal3.558264.08434K562FXR1
chr195905873159058767+CDS,intron-Proximal4.1371310.53109K562DDX24
chr195905940059059460+CDS,intron-Proximal4.6088323.30933HepG2G3BP1
chr195905966259059734+CDS3.216689.49507HepG2GRWD1
chr195905625659056302+CDS,intron-Distal,intron-Proximal3.5718110.37820K562DHX30
chr195905879659058833+CDS4.345517.03491K562RBM15
chr195906026259060274+CDS3.580595.62335HepG2RPS3
chr195906139559061401+CDS3.254695.59529K562PCBP1
chr195905968659059720+CDS4.0347132.78563K562FMR1
chr195906009259060123+CDS,intron-Proximal5.9961178.42942K562EFTUD2
chr195906023959060271+CDS,intron-Proximal3.2120911.18765HepG2PPIG
chr195905940559059441+CDS3.3527212.30918HepG2BUD13
chr195905718559057199+CDS,intron-Distal4.307593.55204K562FXR1
chr195905714959057163+CDS,intron-Distal5.6956330.72287K562FMR1
chr195906021659060284+CDS,intron-Proximal5.21588400.00000K562EFTUD2
chr195906020959060275+CDS,intron-Proximal4.6760914.69272HepG2AQR
chr195906108059061105+CDS,intron-Proximal4.9162636.97906HepG2EFTUD2
chr195905708759057149+CDS,intron-Distal,intron-Proximal3.9467124.22774K562SF3B4
chr195906014059060187+CDS,intron-Proximal5.0180514.62919HepG2AQR
chr195905716759057198+CDS,intron-Distal4.4211737.78781K562FXR2
chr195906078259060823+CDS4.329379.65734HepG2RPS3
chr195905868759058760+CDS,intron-Proximal4.2855022.41342K562SF3B4
chr195906082059060866+CDS3.2022811.22068K562METAP2
chr195906098759061001+CDS3.7712111.50336K562FMR1
chr195905614459056163+CDS,intron-Distal4.3742213.27362K562FXR2
chr195906012659060152+CDS,intron-Proximal5.5254439.69146HepG2PRPF8
chr195906022059060279+CDS,intron-Proximal3.9729727.15822HepG2EFTUD2
chr195905925359059273+CDS3.7669511.24090HepG2G3BP1
chr195905874359058762+CDS4.395818.71672K562METAP2
chr195906092159060950+CDS4.4577216.62115K562FXR2
chr195906023359060284+CDS,intron-Proximal4.5549324.75915HepG2PRPF8
chr195906056559060621+CDS,intron-Proximal4.4525222.29294HepG2PRPF8
chr195906148659061540+CDS,intron-Proximal3.4019122.69745HepG2PRPF8
chr195905966959059697+CDS3.181988.23093K562METAP2
chr195906083559060871+CDS4.3670919.05602K562FXR2
chr195906082159060860+CDS4.4379221.35972K562FMR1
chr195905872659058771+CDS,intron-Proximal3.8494420.12089K562BUD13
chr195906078759060813+CDS4.0229312.72886K562FXR2
chr195905966359059688+CDS3.372828.06364HepG2G3BP1
chr195905985159059894+CDS,intron-Proximal3.1984110.72533K562U2AF2
chr195906012959060220+CDS,intron-Proximal5.3349038.87351HepG2EFTUD2
chr195906051659060560+CDS3.9164622.15944K562FMR1
chr195905925459059273+CDS3.324219.27251K562DDX24
chr195906070659060742+CDS3.5461114.62237K562FMR1
chr195905985859059878+CDS3.3287010.10407K562FXR2
chr195906052559060553+CDS4.413878.77766HepG2RPS3
chr195906147859061544+CDS,intron-Proximal4.1390412.42306HepG2AQR
chr195906183559061876+CDS3.3829810.25920K562FMR1
chr195906091459060954+CDS3.6350911.02213HepG2G3BP1
chr195906036359060371+CDS3.211067.96900K562FMR1
chr195906174559061798+CDS3.0731929.34572K562YBX3
chr195905940059059439+CDS,intron-Proximal4.0246817.21175K562DDX24
chr195905982859059893+CDS,intron-Proximal3.6040120.07180HepG2EFTUD2
chr195906113859061211+CDS3.7920315.47743HepG2PPIG
chr195906070259060749+CDS3.6639111.77523HepG2RPS3
chr195905874559058752+CDS3.0107618.28436K562YBX3
chr195905716159057235+CDS,intron-Distal3.6300514.24333HepG2G3BP1
chr195905926059059273+CDS3.282545.18085K562LIN28B
chr195906013459060142+CDS4.5813013.32758K562FXR2
chr195905925659059273+CDS3.555808.59266K562GRWD1
chr195905719959057243+CDS,intron-Distal3.569299.43239K562METAP2
chr195906051659060563+CDS3.390313.52724HepG2PABPN1
chr195906154259061565+CDS3.2966810.72925K562FMR1
chr195906097359061009+CDS3.8002710.91981K562PCBP1
chr195906163659061650+CDS3.289486.72989K562APOBEC3C
chr195905713759057167+CDS,intron-Distal4.6358432.86570K562FXR2
chr195905983659059857+CDS,intron-Proximal5.9593874.29093K562EFTUD2
chr195906022359060243+CDS,intron-Proximal3.530654.18571HepG2SF3A3
chr195905687959056884+CDS,intron-Distal3.0698622.96908K562YBX3
chr195905719759057211+CDS,intron-Distal3.4996614.88177K562FMR1
chr195906105359061135+CDS,intron-Proximal4.2410534.66043K562SF3B4
chr195905975659059808+CDS,intron-Proximal5.3397630.87787HepG2PRPF8
chr195905874859058767+CDS3.394798.43476K562RPS3
chr195905686459056895+CDS,intron-Distal3.9899115.68397K562FMR1
chr195905874259058745+CDS,intron-Proximal3.1147618.83239K562YBX3
chr195906031359060382+CDS,intron-Proximal4.6440423.23717K562SF3B4
chr195905925059059272+CDS3.2875610.23274K562BUD13
chr195905972559059776+CDS,intron-Proximal3.4652417.60183HepG2PPIG
chr195906069859060741+CDS3.8839116.02254K562FXR2
chr195906035459060373+CDS,intron-Proximal3.413875.64888HepG2RPS3
chr195906007859060126+CDS,intron-Proximal5.9006143.49415HepG2PRPF8
chr195906090759060954+CDS3.466334.79691K562FXR1
chr195905897559058989+CDS4.245428.81535HepG2G3BP1
chr195906110359061137+CDS,intron-Proximal3.2183913.77780K562FMR1
chr195906028459060395+CDS,intron-Proximal5.27390400.00000K562EFTUD2
chr195906110359061110+CDS,intron-Proximal4.748117.56132K562RPS3
chr195906012459060206+CDS,intron-Proximal5.3140443.70226K562AQR
chr195905686059056903+CDS,intron-Distal5.0944031.29227K562FXR2
chr195906091859060954+CDS4.5519518.31393K562RPS3
chr195905617259056211+CDS,intron-Distal,intron-Proximal5.3214317.02120K562FXR2
chr195906056059060603+CDS3.4157616.86461K562FMR1
chr195906071459060745+CDS3.190657.38586HepG2PPIG
chr195905726159057305+CDS,intron-Distal,intron-Proximal3.7932615.70941HepG2PRPF8
chr195906086959060892+CDS3.776977.62413K562RPS3
chr195906030159060385+CDS,intron-Proximal5.8609750.19536HepG2EFTUD2
chr195906046959060487+CDS3.398697.09278HepG2PPIG
chr195905926559059271+CDS3.560319.44001K562FXR2
chr195906100159061017+CDS3.6234716.75975K562FMR1
chr195906007659060140+CDS,intron-Proximal5.9126328.71288HepG2AQR
chr195905924159059270+CDS4.0418714.94885K562FMR1
chr195906097759061007+CDS3.3318413.35141HepG2RPS3
chr195906025959060277+CDS5.1300115.83073K562RPS3
chr195906114659061190+CDS3.518024.02339HepG2PABPN1
chr195905975059059772+CDS3.8772611.35044K562FXR2
chr195906081759060835+CDS3.7346910.82443K562FXR2
chr195906055859060590+CDS4.0803017.39827K562FXR2
chr195905974659059773+CDS3.7630715.65412K562FMR1
chr195906097059061017+CDS3.680574.97785K562FXR1
chr195906152159061535+CDS3.1249310.16298K562FXR2
chr195906174359061745+CDS,intron-Proximal3.0357222.64964K562YBX3
chr195905985759059897+CDS5.0440760.08115K562EFTUD2
chr195906092059060956+CDS4.8389126.27806K562FMR1
chr195905686959056884+CDS,intron-Distal3.321005.26861K562DDX24
chr195905725659057261+CDS,intron-Distal4.187186.51500K562METAP2
chr195905868259058765+CDS,intron-Proximal3.0103220.26281HepG2SF3A3
chr195905891959058970+CDS,intron-Proximal4.6674018.68019K562SF3B4
chr195905616259056212+CDS,intron-Distal,intron-Proximal4.0838022.56465HepG2RPS3
chr195906110559061135+CDS4.3839430.36385HepG2EFTUD2
chr195906096959061019+CDS,intron-Proximal3.6779618.96043HepG2SUB1
chr195905719859057218+CDS,intron-Distal4.1009519.60940K562FXR2
chr195906109759061137+CDS,intron-Proximal3.008838.14327HepG2PRPF8
chr195905968959059721+CDS4.5726733.95218K562FXR2
chr195906097759061016+CDS3.6373412.89966HepG2G3BP1
chr195906116459061211+CDS3.1139011.06808HepG2G3BP1
chr195905871859058764+CDS,intron-Proximal3.425684.52939HepG2PRPF4
chr195906108559061145+CDS,intron-Proximal5.75629400.00000K562EFTUD2
chr195906099659061017+CDS3.6128914.45373K562FXR2
chr195905709359057158+CDS,intron-Distal,intron-Proximal4.409386.81982HepG2SF3B4
chr195905625459056302+CDS,intron-Distal,intron-Proximal4.6062720.58201K562FMR1
chr195905917959059215+CDS3.3093111.53484HepG2SUB1
chr195906058159060599+CDS4.555178.22774K562RPS3
chr195905846059058518+intron-Distal4.158774.56225K562FUS
chr195905847459058509+intron-Distal3.068603.50009K562CSTF2T
chr195905752359057629+intron-Distal3.067296.91768K562CSTF2T
chr195905811059058216+intron-Distal4.2526810.51043K562FUS
chr195905736259057400+intron-Distal,intron-Proximal4.390683.87357K562EWSR1
chr195905759459057632+intron-Distal3.700303.04470K562FUS
chr195905743959057592+intron-Distal3.277988.58011K562FUS
chr195905746459057555+intron-Distal3.705946.77565K562GTF2F1
chr195905759859057654+intron-Distal3.623429.69977K562HNRNPM
chr195905778259057810+intron-Distal4.923938.12044K562HNRNPM
chr195905734959057396+intron-Distal,intron-Proximal3.777114.87260HepG2HNRNPM
chr195905774659057871+intron-Distal3.431507.56588HepG2HNRNPM
chr195905750059057589+intron-Distal3.956227.77550K562EWSR1
chr195905692459056948+intron-Distal,intron-Proximal5.5498518.99614K562AQR
chr195905646459056503+intron-Distal,intron-Proximal5.259608.56980HepG2AQR
chr195905647259056507+intron-Distal,intron-Proximal3.524809.95570K562PRPF8
chr195905780559057829+intron-Distal3.204253.50009K562CSTF2T
chr195905790059057964+intron-Distal4.036638.17769HepG2PRPF4
chr195905647759056506+intron-Distal,intron-Proximal3.867369.52203HepG2PRPF8
chr195905846059058489+intron-Distal3.009483.14777HepG2GTF2F1
chr195905693159056989+intron-Distal,intron-Proximal5.621747.97468K562RBM22
chr195905781059057850+intron-Distal4.150928.56038K562HNRNPM
chr195905733359057410+intron-Distal,intron-Proximal3.701276.59722K562HNRNPM
chr195905731259057362+intron-Distal,intron-Proximal4.5588117.18244K562AQR
chr195905747159057530+intron-Distal3.367035.85203K562TAF15
chr195905760259057659+intron-Distal4.529459.67936HepG2HNRNPM
chr195905727659057307+intron-Distal,intron-Proximal5.8560138.30172K562AQR
chr195905845459058521+intron-Distal3.695583.72797K562GTF2F1
chr195905646459056507+intron-Distal,intron-Proximal4.3888913.60040K562AQR
chr195905690459056924+intron-Distal,intron-Proximal5.2289014.81877K562AQR
chr195905755959057640+intron-Distal3.719683.14313K562SAFB
chr195905726659057290+intron-Distal,intron-Proximal4.968785.90930HepG2AQR
chr195905693559056982+intron-Distal,intron-Proximal3.6245411.50168HepG2RBM22
chr195905812159058230+intron-Distal3.120118.19757K562GTF2F1
chr195906031059060348+intron-Proximal3.785543.23253K562SMNDC1
chr195906006759060097+intron-Proximal4.3298210.20178K562SF3B4
chr195905997459060022+intron-Proximal5.2229516.52322HepG2AQR
chr195906007959060088+intron-Proximal4.8748821.67006K562AQR
chr195905910359059124+intron-Proximal3.7358710.64040HepG2PRPF8
chr195905980559059843+intron-Proximal4.808214.57682HepG2SF3B4
chr195905984159059851+intron-Proximal4.3055615.52461K562U2AF2
chr195906015259060207+intron-Proximal4.8243133.66904HepG2PRPF8
chr195906007059060092+intron-Proximal5.363935.75771HepG2SF3A3
chr195905964559059657+intron-Proximal3.583065.75558K562U2AF2
chr195906016959060219+intron-Proximal4.9566617.03352K562SF3B4
chr195906109159061099+intron-Proximal3.0036010.37891K562PRPF8
chr195906103859061078+intron-Proximal4.225445.92879HepG2RBM22
chr195906106859061080+intron-Proximal4.212513.41594K562SMNDC1
chr195906104859061080+intron-Proximal7.0043622.22504HepG2EFTUD2
chr195905892359058949+intron-Proximal5.3278619.90424K562EFTUD2
chr195906141659061471+intron-Proximal5.6105630.68486HepG2PRPF8
chr195906014959060216+intron-Proximal6.54609400.00000K562EFTUD2
chr195905978359059829+intron-Proximal4.4490715.23188K562PRPF8
chr195905996059059976+intron-Proximal4.530167.53589K562AQR
chr195905936559059391+intron-Proximal5.9466412.80845K562SF3B4
chr195905980459059839+intron-Proximal5.3696518.60679K562SF3B4
chr195906017259060214+intron-Proximal3.263299.26797K562BUD13
chr195905868459058740+intron-Proximal3.568774.59518HepG2SF3B4
chr195906004359060092+intron-Proximal7.8357480.98633K562EFTUD2
chr195906014959060211+intron-Proximal5.3830235.85125K562PRPF8
chr195906141959061478+intron-Proximal4.9112013.20711HepG2AQR
chr195905997359060000+intron-Proximal6.3036820.19308HepG2PRPF8
chr195905868759058717+intron-Proximal4.944765.32906HepG2AQR
chr195905911159059147+intron-Proximal7.6386327.73934K562EFTUD2
chr195905980959059836+intron-Proximal7.3151128.36722K562EFTUD2
chr195906017859060220+intron-Proximal5.4326912.50933HepG2SF3A3
chr195905997659059997+intron-Proximal5.6458210.04245K562AQR
chr195906016159060207+intron-Proximal3.217175.89769K562XRN2
chr195906031059060350+intron-Proximal3.9383012.48765K562PRPF8
chr195906104359061085+intron-Proximal7.8145574.68350K562EFTUD2
chr195906104159061073+intron-Proximal4.2415513.41670K562PRPF8
chr195906102359061098+intron-Proximal4.016756.81982HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM28 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM28 is not available on ENCORE database.

  • 94 RBPs can affect the levels of TRIM28.  








The Knockdown/knockout RNA-Seq assay for TRIM28 is not available on ENCORE database.





94 RBPs can affect the gene expression of TRIM28 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM28ENSG00000130726.71816.520902441.67680-0.426703.794302.55090HepG2AATF
TRIM28ENSG00000130726.73694.692304284.19210-0.213601.954901.42730HepG2ACO1
TRIM28ENSG00000130726.75953.243606889.49960-0.210703.089402.36990HepG2AUH
TRIM28ENSG00000130726.72277.613703040.93350-0.417003.442502.07760HepG2BUD13
TRIM28ENSG00000130726.71370.515302395.13290-0.805406.832105.69270HepG2CALR
TRIM28ENSG00000130726.71483.451402267.51580-0.612204.171503.34340HepG2CPSF6
TRIM28ENSG00000130726.72714.796701999.212400.441306.248404.71750HepG2YBX3
TRIM28ENSG00000130726.71618.606502501.02800-0.627803.453301.87230HepG2CSTF2T
TRIM28ENSG00000130726.71896.672702691.47880-0.504906.298605.32290HepG2DDX21
TRIM28ENSG00000130726.72010.615702635.83450-0.390603.593002.54360HepG2DDX24
TRIM28ENSG00000130726.72557.590801945.759700.394409.088707.98770HepG2DNAJC2
TRIM28ENSG00000130726.71476.572602480.15840-0.748205.446803.89950HepG2AGO1
TRIM28ENSG00000130726.73444.927104254.27380-0.304402.889802.03750HepG2EIF4G1
TRIM28ENSG00000130726.76080.963507910.41050-0.379506.964906.08410HepG2ETF1
TRIM28ENSG00000130726.71274.434702271.60740-0.833902.934101.88730HepG2FTO
TRIM28ENSG00000130726.72682.888103276.28570-0.288302.863502.06370HepG2FUBP3
TRIM28ENSG00000130726.71717.949002570.13570-0.581203.836203.09330HepG2GPKOW
TRIM28ENSG00000130726.73658.661802490.816500.554602.824101.43570HepG2HNRNPA0
TRIM28ENSG00000130726.72627.312003962.82250-0.592906.035204.74870HepG2HNRNPA2B1
TRIM28ENSG00000130726.73999.604103510.425500.188102.044201.42090HepG2HNRNPF
TRIM28ENSG00000130726.76207.295504555.416400.446302.082201.47090HepG2HNRNPK
TRIM28ENSG00000130726.71568.876002452.75230-0.644704.569603.78030HepG2HNRNPLL
TRIM28ENSG00000130726.72532.724602189.879500.209702.133901.59340HepG2HNRNPU
TRIM28ENSG00000130726.72477.824203316.68820-0.420704.624103.59830HepG2MSI2
TRIM28ENSG00000130726.71496.509102502.07880-0.741502.628901.68710HepG2MTPAP
TRIM28ENSG00000130726.72197.987702785.32420-0.341702.543101.37990HepG2NAA15
TRIM28ENSG00000130726.71575.103702175.03010-0.465602.701301.96090HepG2NSUN2
TRIM28ENSG00000130726.72819.490101953.194300.529505.173904.19450HepG2PPIL4
TRIM28ENSG00000130726.71727.060502534.34850-0.553302.136001.42180HepG2PRPF8
TRIM28ENSG00000130726.73581.038804766.76110-0.412608.913408.04500HepG2PTBP1
TRIM28ENSG00000130726.75445.433704332.870500.329606.563205.73120HepG2PUM1
TRIM28ENSG00000130726.75320.010304329.557500.297102.029301.44870HepG2PUM2
TRIM28ENSG00000130726.73524.909304363.62370-0.307903.447802.77760HepG2PUS1
TRIM28ENSG00000130726.73576.541305162.11700-0.5294010.972809.84840HepG2QKI
TRIM28ENSG00000130726.74089.026206611.56790-0.6932022.2749021.08910HepG2RBM22
TRIM28ENSG00000130726.73658.752504685.10520-0.356703.147702.43330HepG2RBM25
TRIM28ENSG00000130726.72718.796003781.91890-0.476206.177005.21350HepG2RPLP0
TRIM28ENSG00000130726.71523.415002506.79390-0.718502.594301.83070HepG2RRP9
TRIM28ENSG00000130726.72327.402701950.173700.255003.741503.01200HepG2SAFB2
TRIM28ENSG00000130726.71428.748402117.77280-0.567802.179601.34070HepG2SERBP1
TRIM28ENSG00000130726.75801.852503802.986000.609304.689703.79860HepG2SF3A3
TRIM28ENSG00000130726.74070.404104962.47450-0.285904.926104.17290HepG2SF3B4
TRIM28ENSG00000130726.72846.848302274.213800.323906.989506.03910HepG2SMN1
TRIM28ENSG00000130726.71898.260502701.16920-0.508903.183502.34380HepG2SNRNP70
TRIM28ENSG00000130726.74923.956307467.39620-0.6008025.7287024.60210HepG2SRFBP1
TRIM28ENSG00000130726.74062.855605179.88740-0.350407.695106.99830HepG2SRSF1
TRIM28ENSG00000130726.75193.902004030.116200.365908.254907.24840HepG2SRSF5
TRIM28ENSG00000130726.72949.879804214.23350-0.5146014.8507013.75380HepG2SRSF9
TRIM28ENSG00000130726.74958.673206483.24700-0.3868010.205009.33920HepG2SSB
TRIM28ENSG00000130726.75637.129404583.108100.298505.949305.09990HepG2SUCLG1
TRIM28ENSG00000130726.71747.280003272.52310-0.905303.480602.73300HepG2SUPV3L1
TRIM28ENSG00000130726.72731.601104656.26890-0.7694017.2917016.06210HepG2TAF15
TRIM28ENSG00000130726.71565.886502391.39010-0.610903.765602.93580HepG2TARDBP
TRIM28ENSG00000130726.73361.910804278.06920-0.347702.468101.67600HepG2TIA1
TRIM28ENSG00000130726.75253.911403987.786200.397703.410402.42930HepG2TUFM
TRIM28ENSG00000130726.72520.698903372.67080-0.420109.821308.64470HepG2UPF1
TRIM28ENSG00000130726.74657.818303256.175600.5164015.7419014.48600HepG2UTP3
TRIM28ENSG00000130726.72538.360803261.14430-0.361508.203707.15000HepG2ZC3H8
TRIM28ENSG00000130726.72579.540503709.28710-0.5240018.8285017.71580HepG2ZNF622
TRIM28ENSG00000130726.713923.966007736.468100.8477048.1383045.81840K562AGGF1
TRIM28ENSG00000130726.711699.937208501.403100.460604.127202.87310K562AKAP8
TRIM28ENSG00000130726.712806.883708050.193500.669705.836004.86510K562AKAP8L
TRIM28ENSG00000130726.718449.5304012348.077900.5792010.223209.20450K562AQR
TRIM28ENSG00000130726.79954.410908446.681100.236903.253002.25730K562ATP5C1
TRIM28ENSG00000130726.711056.608308665.302800.351507.347705.51700K562CPEB4
TRIM28ENSG00000130726.77350.049805384.743700.448805.286103.76110K562CSTF2
TRIM28ENSG00000130726.77645.332006222.364200.297004.391002.70630K562DDX27
TRIM28ENSG00000130726.710448.534108967.022300.220503.528102.80460K562DDX47
TRIM28ENSG00000130726.710307.227308662.285400.250703.764502.72130K562DKC1
TRIM28ENSG00000130726.79309.774706608.564100.494302.599301.71800K562EFTUD2
TRIM28ENSG00000130726.710513.981907072.685800.571903.575002.38310K562EIF3D
TRIM28ENSG00000130726.75037.139503069.714900.7144019.9623017.76110K562EIF3G
TRIM28ENSG00000130726.78840.332606947.703600.347505.688003.70770K562EWSR1
TRIM28ENSG00000130726.72105.722002713.87670-0.366004.636502.85570K562FUS
TRIM28ENSG00000130726.710049.038308277.310900.279704.863704.09250K562FXR1
TRIM28ENSG00000130726.7738.772302651.64930-1.8437010.421508.88080K562G3BP2
TRIM28ENSG00000130726.710960.708508103.595600.435603.063401.94480K562HNRNPL
TRIM28ENSG00000130726.78211.766204815.742600.769802.917201.85510K562IGF2BP2
TRIM28ENSG00000130726.711411.667208543.099900.417606.300404.93890K562KIF1C
TRIM28ENSG00000130726.77169.351205057.149900.503404.293603.24370K562MAGOH
TRIM28ENSG00000130726.710857.167508177.984600.408704.959503.38690K562MAK16
TRIM28ENSG00000130726.76664.269805046.281200.401102.791401.86430K562MATR3
TRIM28ENSG00000130726.712274.412009570.453200.358904.917803.63670K562MBNL1
TRIM28ENSG00000130726.74282.762503324.585900.365304.202903.10820K562METAP2
TRIM28ENSG00000130726.78452.212206708.209300.333302.136501.38490K562NAA15
TRIM28ENSG00000130726.711493.430809519.769400.271709.988408.69060K562NSUN2
TRIM28ENSG00000130726.79615.748805305.426500.857805.341603.83720K562PABPN1
TRIM28ENSG00000130726.77088.485804945.239700.519304.245102.54860K562PCBP1
TRIM28ENSG00000130726.78834.327606788.177500.380002.933902.08570K562PPIG
TRIM28ENSG00000130726.79816.494506308.789300.637702.814701.36030K562PPP1R8
TRIM28ENSG00000130726.77197.747604913.637200.550704.362803.54650K562PTBP1
TRIM28ENSG00000130726.714016.6993016914.79500-0.271103.774802.51080K562PUM1
TRIM28ENSG00000130726.714633.001807983.242200.8741015.6327014.38120K562PUS1
TRIM28ENSG00000130726.712712.966507778.749300.7086023.1406021.35510K562RBM15
TRIM28ENSG00000130726.74031.440002754.800700.549205.219704.02240K562SF3B4
TRIM28ENSG00000130726.79480.477405916.990800.680003.142001.71970K562SFPQ
TRIM28ENSG00000130726.71895.652302818.77590-0.572406.304103.63340K562SND1
TRIM28ENSG00000130726.77068.310104817.452400.553003.867303.03720K562SRSF1
TRIM28ENSG00000130726.75503.732404289.284900.359604.530103.12800K562SRSF4
TRIM28ENSG00000130726.76715.228804550.834000.561203.733902.48020K562SRSF5
TRIM28ENSG00000130726.78611.697104874.607100.820906.742005.59480K562TARDBP
TRIM28ENSG00000130726.77752.396104702.363600.721205.819604.56520K562TIA1
TRIM28ENSG00000130726.77347.969604616.711300.670404.797803.28740K562TRA2A
TRIM28ENSG00000130726.78030.468308981.66960-0.161502.513501.70460K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM28 is not available on ENCORE database.





18 RBPs can affect the splicing of TRIM28 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRIM28ENSG00000130726.7chr19+590567915905690459056304590564645905874259058878-0.115000.000000.00004excludedK562AQR
A3SSTRIM28ENSG00000130726.7chr19+5906020659060277590602285906027759060106590601430.072000.000140.03244longerK562RBM22
A3SSTRIM28ENSG00000130726.7chr19+5906020659060277590602285906027759060106590601430.077000.000000.00054longerHepG2RBM22
RITRIM28ENSG00000130726.7chr19+590600855906027759060085590601435906022859060277-0.072000.000400.03376excludedK562NONO
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.063000.000000.00000includedK562PUS1
RITRIM28ENSG00000130726.7chr19+5906008559060277590600855906014359060228590602770.093000.000000.00001includedK562PUS1
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.066000.000000.00000includedHepG2SF3A3
RITRIM28ENSG00000130726.7chr19+5906008559060277590600855906014359060228590602770.111000.000050.00105includedHepG2SF3A3
RITRIM28ENSG00000130726.7chr19+5905967259059897590596725905977559059852590598970.078000.001470.04775includedK562SF3B1
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.066000.000000.00000includedHepG2PRPF8
RITRIM28ENSG00000130726.7chr19+5906008559060277590600855906014359060228590602770.098000.011530.09847includedHepG2PRPF8
RITRIM28ENSG00000130726.7chr19+590601065906027759060106590601435906022859060277-0.099000.000070.00328excludedK562SRSF1
RITRIM28ENSG00000130726.7chr19+590601065906027759060106590601435906022859060277-0.088000.000340.05440excludedK562TIA1
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.083000.000000.00000includedK562PRPF8
RITRIM28ENSG00000130726.7chr19+590600855906027759060085590601435906022859060277-0.101000.000140.03288excludedHepG2NOL12
RITRIM28ENSG00000130726.7chr19+5906008559060277590600855906014359060228590602770.153000.001680.07545includedHepG2HNRNPA1
RITRIM28ENSG00000130726.7chr19+590600855906027759060085590601435906022859060277-0.052000.000130.01815excludedK562AARS
RITRIM28ENSG00000130726.7chr19+5906110359061402590611035906122759061315590614020.059000.000000.00000includedK562RBM22
RITRIM28ENSG00000130726.7chr19+5906008559060277590600855906014359060228590602770.163000.000020.00111includedK562RBM22
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.051000.000010.00013includedHepG2U2AF1
RITRIM28ENSG00000130726.7chr19+5906008559060277590600855906014359060228590602770.060000.007100.08511includedHepG2G3BP1
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.076000.000000.00000includedK562U2AF2
RITRIM28ENSG00000130726.7chr19+5906010659060277590601065906014359060228590602770.230000.001630.02359includedK562U2AF2
RITRIM28ENSG00000130726.7chr19+5906110359061402590611035906122759061315590614020.079000.000000.00000includedHepG2RBM22
RITRIM28ENSG00000130726.7chr19+5906010659060277590601065906014359060228590602770.243000.000000.00000includedHepG2RBM22
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.081000.000000.00000includedK562EFTUD2
RITRIM28ENSG00000130726.7chr19+5906110359061402590611035906122759061315590614020.141000.000000.00000includedK562AQR
RITRIM28ENSG00000130726.7chr19+5906156459061770590615645906165159061743590617700.137000.000000.00000includedK562AQR
RITRIM28ENSG00000130726.7chr19+5906006359060267590600635906014359060228590602670.254000.000000.00000includedK562AQR
RITRIM28ENSG00000130726.7chr19+590601065906027759060106590601435906022859060277-0.074000.001870.05836excludedK562TARDBP
MXETRIM28ENSG00000130726.7chr19+5905679159056904590571305905726359056304590564645905874259058878-0.064000.000750.007132includedK562AQR
MXETRIM28ENSG00000130726.7chr19+59056791590569045905713059057263590563045905646459058742590588780.056000.000220.008021includedK562TARDBP
MXETRIM28ENSG00000130726.7chr19+5906069759061017590611525906122759060354590606075906131559061402-0.065000.001240.035512includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRIM28 is not avaliable on ENCORE database.