TFDP2

General Information

Gene Name : TFDP2
Gene ID : ENSG00000114126.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TFDP2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TFDP2	ENSG00000114126.17	44.15	32.78	38.47	ENCSR000AEF
HepG2	TFDP2	ENSG00000114126.17	11.53	25.43	18.48	ENCSR985KAT
K562	TFDP2	ENSG00000114126.17	87.65	107.36	97.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TFDP2 is not avaliable on ENCORE database.

Proteins bound to RNA

TFDP2 RNA is bound by 30 proteins.

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eCLIP assay for TFDP2 is not avaliable on ENCORE database.

30 proteins are bound to TFDP2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	141868239	141868307	-	5'-UTR,intron-Distal,intron-Proximal	4.64332	13.16393	HepG2	DDX3X
chr3	141791344	141791470	-	intron-Distal	5.51831	12.10180	HepG2	SUGP2
chr3	141868110	141868192	-	5'-UTR,intron-Distal	5.10714	11.73310	HepG2	DDX3X
chr3	141668871	141668987	-	3'-UTR,intron-Distal	3.49505	9.23879	HepG2	UPF1
chr3	141671349	141671441	-	3'-UTR,CDS,intron-Distal	3.32048	9.23212	K562	ZNF622
chr3	141669459	141669529	-	3'-UTR,intron-Distal	3.65594	9.06214	HepG2	QKI
chr3	141682651	141682728	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.16601	7.19068	K562	YBX3
chr3	141669659	141669725	-	3'-UTR,intron-Distal	4.22888	7.15603	K562	UPF1
chr3	141678575	141678661	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.22962	7.09561	HepG2	BCLAF1
chr3	141682138	141682280	-	intron-Distal	3.79226	7.05443	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 74 entries

eCLIP assay for TFDP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TFDP2 is not available on ENCORE database.
118 RBPs can affect the levels of TFDP2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TFDP2 is not available on ENCORE database.

118 RBPs can affect the gene expression of TFDP2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TFDP2	ENSG00000114126.13	6714.98030	3415.29350	0.97530	49.36220	46.96820	K562	DDX47
TFDP2	ENSG00000114126.13	333.29400	982.16100	-1.55920	43.66240	41.74150	HepG2	CELF1
TFDP2	ENSG00000114126.13	4336.93270	2474.43690	0.80950	37.60160	35.18690	K562	WDR43
TFDP2	ENSG00000114126.13	505.57560	1333.99630	-1.39980	34.82330	33.44580	HepG2	ZNF622
TFDP2	ENSG00000114126.13	407.80460	834.70390	-1.03340	23.93090	22.34180	HepG2	SMN1
TFDP2	ENSG00000114126.13	368.29720	787.96120	-1.09730	23.71060	22.25970	HepG2	TRIM56
TFDP2	ENSG00000114126.13	590.72800	1178.93710	-0.99690	21.16310	20.00280	HepG2	RBM22
TFDP2	ENSG00000114126.13	664.82240	1228.58580	-0.88600	19.62270	18.09950	HepG2	AUH
TFDP2	ENSG00000114126.13	1663.28640	3155.82580	-0.92400	18.42740	17.08000	K562	AQR
TFDP2	ENSG00000114126.13	780.77230	1331.59400	-0.77020	17.39650	16.42460	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TFDP2 is not available on ENCORE database.

26 RBPs can affect the splicing of TFDP2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TFDP2	ENSG00000114126.13	chr3	-	141713861	141713983	141697361	141697524	141724282	141724386	0.14700	0.00000	0.00013	included	K562	SRSF1
SE	TFDP2	ENSG00000114126.13	chr3	-	141712379	141712427	141697361	141697524	141713861	141713983	-0.09700	0.00000	0.00000	excluded	K562	SF3B4
SE	TFDP2	ENSG00000114126.13	chr3	-	141724282	141724386	141713861	141713983	141747420	141747439	-0.08700	0.00000	0.00000	excluded	K562	PUS1
SE	TFDP2	ENSG00000114126.13	chr3	-	141772956	141772991	141724282	141724386	141811902	141811969	0.28100	0.00000	0.00009	included	HepG2	SFPQ
SE	TFDP2	ENSG00000114126.13	chr3	-	141724282	141724386	141713861	141713983	141747420	141747439	-0.12400	0.00000	0.00000	excluded	K562	U2AF1
SE	TFDP2	ENSG00000114126.13	chr3	-	141724282	141724386	141713861	141713983	141747420	141747439	-0.14800	0.00000	0.00000	excluded	K562	U2AF2
SE	TFDP2	ENSG00000114126.13	chr3	-	141712379	141712427	141697361	141697524	141713861	141713983	-0.05800	0.00000	0.00000	excluded	K562	AGGF1
A3SS	TFDP2	ENSG00000114126.13	chr3	-	141678641	141678719	141678641	141678682	141682653	141682805	0.05100	0.00000	0.00001	longer	K562	AQR
SE	TFDP2	ENSG00000114126.13	chr3	-	141713861	141713983	141697361	141697524	141724282	141724386	0.13700	0.00001	0.00296	included	K562	MATR3
SE	TFDP2	ENSG00000114126.13	chr3	-	141772956	141772991	141724282	141724386	141811902	141811969	0.26100	0.00001	0.00308	included	HepG2	RBFOX2

Showing 1 to 10 of 34 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TFDP2

General Information

Functions

Localization

Domains (AlphaFold: TFDP2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TFDP2 is not avaliable on ENCORE database.

30 proteins are bound to TFDP2 RNA:

eCLIP assay for TFDP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TFDP2 is not available on ENCORE database.

118 RBPs can affect the gene expression of TFDP2 :

The Knockdown/knockout RNA-Seq assay for TFDP2 is not available on ENCORE database.

26 RBPs can affect the splicing of TFDP2 :

The Knockdown/knockout RNA-Seq assay for TFDP2 is not avaliable on ENCORE database.