SMPD1

General Information

Gene Name       : SMPD1
Gene ID             : ENSG00000166311.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMPD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMPD1ENSG00000166311.93.804.724.26ENCSR000AEF
HepG2SMPD1ENSG00000166311.98.716.197.45ENCSR985KAT
K562SMPD1ENSG00000166311.96.605.105.85ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMPD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMPD1 RNA is bound by 1 proteins.  







eCLIP assay for SMPD1 is not avaliable on ENCORE database.





1 proteins are bound to SMPD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1164117246411806+5'-UTR6.1071416.52524HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMPD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMPD1 is not available on ENCORE database.

  • 135 RBPs can affect the levels of SMPD1.  








The Knockdown/knockout RNA-Seq assay for SMPD1 is not available on ENCORE database.





135 RBPs can affect the gene expression of SMPD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMPD1ENSG00000166311.5524.56060343.931400.608903.584402.51800HepG2ABCF1
SMPD1ENSG00000166311.5483.73790224.779201.1056016.3205015.10520HepG2ACO1
SMPD1ENSG00000166311.51561.14760317.520902.2976050.8131048.97180HepG2AKAP1
SMPD1ENSG00000166311.5613.91450258.555301.2475013.6647011.57520HepG2AKAP8
SMPD1ENSG00000166311.5339.56350225.873600.588104.227003.29300HepG2AKAP8L
SMPD1ENSG00000166311.5736.04060308.734601.2533022.1900020.58800HepG2AUH
SMPD1ENSG00000166311.5491.79880191.779501.3585013.2436011.47760HepG2BCLAF1
SMPD1ENSG00000166311.51139.24100307.183901.8908046.3134044.43810HepG2BOP1
SMPD1ENSG00000166311.5530.92660257.661401.0429011.720509.37060HepG2BUD13
SMPD1ENSG00000166311.5400.86560192.783801.056008.694907.43600HepG2CALR
SMPD1ENSG00000166311.5588.96320305.472100.947007.461405.84260HepG2CCAR1
SMPD1ENSG00000166311.5670.89870249.596101.4264019.5147017.67500HepG2CIRBP
SMPD1ENSG00000166311.5431.90300224.776500.9421011.7600010.58150HepG2CKAP4
SMPD1ENSG00000166311.5248.21620151.824300.709102.712101.95580HepG2CNOT7
SMPD1ENSG00000166311.5535.06020282.011800.923808.835907.66840HepG2CPSF6
SMPD1ENSG00000166311.5421.45150259.056100.702003.534302.82660HepG2CELF1
SMPD1ENSG00000166311.5586.94580278.557501.0752018.9982017.37610HepG2DAZAP1
SMPD1ENSG00000166311.5302.48130207.909800.540803.893302.92530HepG2DDX19B
SMPD1ENSG00000166311.5307.11860179.981200.770805.462403.88660HepG2DDX1
SMPD1ENSG00000166311.5430.23710175.420701.2942014.0121012.62870HepG2DDX21
SMPD1ENSG00000166311.51763.30770304.134402.5354071.9644069.18010HepG2DDX3X
SMPD1ENSG00000166311.5428.18690217.022400.980306.501405.37550HepG2DDX55
SMPD1ENSG00000166311.5402.92200276.380300.543703.255602.16670HepG2DDX5
SMPD1ENSG00000166311.51093.29710261.320402.0647012.0992010.91660HepG2DDX6
SMPD1ENSG00000166311.5308.78620170.216500.859106.189004.76140HepG2DHX30
SMPD1ENSG00000166311.5491.48700215.064701.1923016.6387015.28510HepG2DKC1
SMPD1ENSG00000166311.5358.87800176.482501.0239010.495109.19640HepG2DNAJC21
SMPD1ENSG00000166311.5621.45990200.890101.6292021.4114019.26980HepG2EEF2
SMPD1ENSG00000166311.51080.23320251.151402.1046044.9503042.80330HepG2EIF2S1
SMPD1ENSG00000166311.51006.15410277.521701.8581032.5620030.42240HepG2EIF4A3
SMPD1ENSG00000166311.5425.53870263.248500.692804.873203.81120HepG2EIF4G2
SMPD1ENSG00000166311.5822.92870354.471901.2150025.2411023.73710HepG2ETF1
SMPD1ENSG00000166311.5244.08380145.763300.743604.437502.92550HepG2FAM120A
SMPD1ENSG00000166311.51126.05760347.282901.6970027.7301025.76640HepG2FIP1L1
SMPD1ENSG00000166311.5497.91390260.600300.934005.059702.82390HepG2FMR1
SMPD1ENSG00000166311.5432.63720180.865201.2581010.315608.35860HepG2FUS
SMPD1ENSG00000166311.5385.81730280.098900.461902.237401.61290HepG2FXR1
SMPD1ENSG00000166311.5670.88080259.784901.3686017.3810015.78470HepG2G3BP1
SMPD1ENSG00000166311.5398.38210275.857500.530102.838201.93520HepG2G3BP2
SMPD1ENSG00000166311.5570.39290167.149201.7707024.6086021.69570HepG2GNB2L1
SMPD1ENSG00000166311.5955.92420319.683201.580209.539508.39840HepG2GPKOW
SMPD1ENSG00000166311.5232.03710140.554200.723102.497201.43790HepG2GRSF1
SMPD1ENSG00000166311.5391.00660214.627800.865309.403707.74050HepG2HDGF
SMPD1ENSG00000166311.5207.60510128.431000.692702.775101.40040HepG2HNRNPA0
SMPD1ENSG00000166311.5412.93460178.173201.2125011.9442010.75370HepG2HNRNPA1
SMPD1ENSG00000166311.5353.82060255.998200.466802.874001.92410HepG2HNRNPA2B1
SMPD1ENSG00000166311.5247.14240125.409600.978605.584303.53930HepG2HNRNPAB
SMPD1ENSG00000166311.5777.34690198.183701.9716038.0728035.84210HepG2HNRNPC
SMPD1ENSG00000166311.5553.07550263.167601.0714011.069909.75640HepG2HNRNPK
SMPD1ENSG00000166311.5496.80380305.079500.703403.910803.17500HepG2HNRNPLL
SMPD1ENSG00000166311.5409.40630196.873501.0562013.1190011.87530HepG2HNRNPU
SMPD1ENSG00000166311.5453.37790281.345200.688303.709802.28130HepG2HSPD1
SMPD1ENSG00000166311.5453.46030307.334000.561104.496703.59280HepG2IGF2BP1
SMPD1ENSG00000166311.5662.59460264.048601.3272016.9803015.47550HepG2IGF2BP2
SMPD1ENSG00000166311.5254.57740144.715600.814804.232002.70320HepG2KHDRBS1
SMPD1ENSG00000166311.5437.44250265.619600.719603.971302.74990HepG2KHSRP
SMPD1ENSG00000166311.5292.62810205.505100.509803.256002.15130HepG2KIF1C
SMPD1ENSG00000166311.5698.03130281.208601.3116013.1652010.60900HepG2KRR1
SMPD1ENSG00000166311.5276.75700163.774100.756804.271402.85500HepG2LARP7
SMPD1ENSG00000166311.5453.09910280.197100.693304.549903.71400HepG2MAGOH
SMPD1ENSG00000166311.5655.18500281.750501.2174012.8572011.56910HepG2MATR3
SMPD1ENSG00000166311.5323.96160170.656300.924603.802402.57540HepG2METAP2
SMPD1ENSG00000166311.5577.69720281.044901.0394011.9464010.38470HepG2MSI2
SMPD1ENSG00000166311.5558.71200311.139600.844405.294203.92860HepG2MTPAP
SMPD1ENSG00000166311.5803.23730288.375201.4778020.9412019.30070HepG2NCBP2
SMPD1ENSG00000166311.5258.49020148.080900.803604.687802.83160HepG2NIP7
SMPD1ENSG00000166311.5387.64860199.313100.959604.410503.00910HepG2NONO
SMPD1ENSG00000166311.5405.45660157.103901.367704.174001.35760HepG2NPM1
SMPD1ENSG00000166311.5341.15950222.940100.613703.611101.76370HepG2NUP35
SMPD1ENSG00000166311.5526.09370256.761601.034809.896608.55020HepG2PABPC4
SMPD1ENSG00000166311.5295.67840194.872300.601403.870702.88830HepG2PARN
SMPD1ENSG00000166311.5398.76220171.187501.219909.393907.61830HepG2PCBP2
SMPD1ENSG00000166311.5267.12620175.595600.605203.669202.83280HepG2PPIL4
SMPD1ENSG00000166311.5156.85630216.04700-0.461902.038501.36710HepG2PRPF4
SMPD1ENSG00000166311.5447.63500167.383401.4191013.8530012.24480HepG2PRPF8
SMPD1ENSG00000166311.5408.55820279.229500.549004.089503.45350HepG2PTBP1
SMPD1ENSG00000166311.5778.91630263.670501.5626029.4440027.77550HepG2PUF60
SMPD1ENSG00000166311.5414.99430279.895100.568105.136904.38000HepG2PUM1
SMPD1ENSG00000166311.5572.87160279.692401.034307.745006.64830HepG2PUM2
SMPD1ENSG00000166311.5383.15310228.958900.742707.056406.15000HepG2PUS1
SMPD1ENSG00000166311.5436.85860302.403400.530603.658102.95480HepG2QKI
SMPD1ENSG00000166311.558.41080165.11710-1.499205.362904.39890HepG2RAVER1
SMPD1ENSG00000166311.5421.28280296.272200.507802.428101.93400HepG2RBM22
SMPD1ENSG00000166311.5411.66650310.752100.405602.370401.86270HepG2NELFE
SMPD1ENSG00000166311.5479.34480336.154000.511802.280201.65070HepG2RPLP0
SMPD1ENSG00000166311.5533.28490162.346501.7157014.3287012.37190HepG2RPS10
SMPD1ENSG00000166311.5330.05190158.682701.056408.640107.62700HepG2RPS19
SMPD1ENSG00000166311.5334.05820182.131100.875005.568204.45640HepG2RPS2
SMPD1ENSG00000166311.5313.11660152.501101.037806.459205.24070HepG2RPS3A
SMPD1ENSG00000166311.5292.73470185.921900.654803.198302.03670HepG2RPS5
SMPD1ENSG00000166311.5294.55160165.573700.830904.194403.24950HepG2RRP9
SMPD1ENSG00000166311.580.05480175.32520-1.131007.006006.04790HepG2SAFB2
SMPD1ENSG00000166311.5453.19310159.244701.5088017.3705015.15930HepG2SERBP1
SMPD1ENSG00000166311.51310.26010401.426801.7065026.9572024.79930HepG2SF3A3
SMPD1ENSG00000166311.5521.74310301.969000.788806.690505.63390HepG2SF3B1
SMPD1ENSG00000166311.5581.88770290.706401.0011013.9243012.75620HepG2SF3B4
SMPD1ENSG00000166311.5344.39800252.813200.445902.830002.12030HepG2SLBP
SMPD1ENSG00000166311.5376.15630128.925501.544705.877603.78340HepG2SNRNP200
SMPD1ENSG00000166311.5474.72810335.993200.498602.006001.34580HepG2SNRNP70
SMPD1ENSG00000166311.5428.91190303.437600.499203.631603.10810HepG2SRSF1
SMPD1ENSG00000166311.5461.86280260.332900.827009.258008.20290HepG2SRSF5
SMPD1ENSG00000166311.5355.14680246.865300.524602.164701.66420HepG2SRSF9
SMPD1ENSG00000166311.5612.68020290.533701.0763018.3255017.25340HepG2SSB
SMPD1ENSG00000166311.5565.79670296.073000.9342013.6623012.45210HepG2SUCLG1
SMPD1ENSG00000166311.5370.59150234.482200.660304.654703.45050HepG2SUPT6H
SMPD1ENSG00000166311.5607.79060216.033201.4922015.9140014.52560HepG2SUPV3L1
SMPD1ENSG00000166311.5362.16910272.750100.409002.432801.90210HepG2TAF15
SMPD1ENSG00000166311.5770.33810297.355801.3732021.5276019.86690HepG2TARDBP
SMPD1ENSG00000166311.5628.59160275.523401.189804.446803.11840HepG2TBRG4
SMPD1ENSG00000166311.5396.09680250.611100.660305.063903.94450HepG2TIA1
SMPD1ENSG00000166311.5643.30210191.303101.7495012.5573011.62490HepG2TIAL1
SMPD1ENSG00000166311.5417.35610193.009301.1125014.5891013.43740HepG2TRIM56
SMPD1ENSG00000166311.5445.29650297.064700.583903.483802.78390HepG2U2AF1
SMPD1ENSG00000166311.5795.59700149.708602.4098012.6532010.45970HepG2U2AF2
SMPD1ENSG00000166311.5760.82830272.652301.4804017.9762015.83830HepG2UBE2L3
SMPD1ENSG00000166311.542.49270127.61120-1.586507.988206.70060HepG2UCHL5
SMPD1ENSG00000166311.5867.55110356.004201.2850026.2199024.52020HepG2UPF1
SMPD1ENSG00000166311.5655.55630365.922700.8411012.0967010.10930HepG2UTP18
SMPD1ENSG00000166311.5428.25300343.708100.317201.848401.33730HepG2UTP3
SMPD1ENSG00000166311.5323.88940136.598201.245509.139307.17890HepG2XPO5
SMPD1ENSG00000166311.5306.49400181.665700.754503.845902.59510HepG2XRCC6
SMPD1ENSG00000166311.5339.68060213.193300.671905.174304.30490HepG2ZC3H8
SMPD1ENSG00000166311.5268.60130391.53650-0.543704.551303.89490HepG2ZNF622
SMPD1ENSG00000166311.5639.14110218.341501.5494022.3097020.82600K562AQR
SMPD1ENSG00000166311.5186.42050117.649300.664003.039202.03590K562BCLAF1
SMPD1ENSG00000166311.5313.62220132.584801.242009.612007.93350K562BOP1
SMPD1ENSG00000166311.5433.74470298.171100.540603.703602.31130K562CCDC124
SMPD1ENSG00000166311.5336.02070207.065800.698402.872701.40590K562CKAP4
SMPD1ENSG00000166311.5271.62530162.578600.740402.855001.77190K562CNOT7
SMPD1ENSG00000166311.5235.37690140.990900.739303.945903.01020K562CPSF6
SMPD1ENSG00000166311.5218.0694096.357001.178208.614706.67810K562DDX3X
SMPD1ENSG00000166311.5185.01220279.37910-0.594602.143301.38380K562DKC1
SMPD1ENSG00000166311.5206.86800111.292400.894303.974102.40850K562EEF2
SMPD1ENSG00000166311.5188.15340107.531100.807103.537802.49850K562EFTUD2
SMPD1ENSG00000166311.5161.55950105.863600.609802.737901.53870K562EIF2S1
SMPD1ENSG00000166311.5369.04670181.775601.0215010.452909.19250K562EIF2S2
SMPD1ENSG00000166311.5169.61680100.678200.752403.445102.53370K562EIF4A3
SMPD1ENSG00000166311.5265.99400154.520200.783504.569503.45870K562FIP1L1
SMPD1ENSG00000166311.5289.71220143.425501.014206.794905.43130K562FMR1
SMPD1ENSG00000166311.5212.86750121.553300.808303.827002.73750K562FTO
SMPD1ENSG00000166311.5215.01630104.702601.038006.929106.03220K562FXR1
SMPD1ENSG00000166311.517.8075055.65500-1.644002.023401.43120K562G3BP2
SMPD1ENSG00000166311.5312.27900134.623701.2138010.028308.50440K562GPKOW
SMPD1ENSG00000166311.5383.04880242.225300.661104.172503.24760K562GRSF1
SMPD1ENSG00000166311.5384.13920130.706201.5552017.1507015.74450K562HNRNPC
SMPD1ENSG00000166311.5304.43120209.510100.539002.555301.78750K562HSPD1
SMPD1ENSG00000166311.5198.54100131.402600.595302.487901.66180K562METAP2
SMPD1ENSG00000166311.5171.83540100.521100.773403.560702.15020K562NCBP2
SMPD1ENSG00000166311.5356.94130156.190801.192306.043704.20780K562PABPC1
SMPD1ENSG00000166311.5385.59270255.961200.591103.233802.33470K562PCBP3
SMPD1ENSG00000166311.5312.15550196.320000.669004.223203.23010K562POLR2G
SMPD1ENSG00000166311.5231.88760104.640101.147906.635305.47220K562PRPF8
SMPD1ENSG00000166311.5161.0494091.619400.813703.915203.13830K562PTBP1
SMPD1ENSG00000166311.5490.32980257.671200.928108.529407.08930K562PUF60
SMPD1ENSG00000166311.5371.52610268.537200.468202.650801.71090K562PUM2
SMPD1ENSG00000166311.5145.9710087.839900.732602.942202.07290K562RBM22
SMPD1ENSG00000166311.5258.99750174.960200.565802.671601.61060K562SAFB
SMPD1ENSG00000166311.5261.23800148.099200.818703.436101.69520K562SBDS
SMPD1ENSG00000166311.5333.77490208.390800.679505.196804.10450K562SF3A3
SMPD1ENSG00000166311.5213.63590127.987700.739003.083102.05470K562SF3B1
SMPD1ENSG00000166311.5157.9751089.820000.814503.452902.66870K562SRSF1
SMPD1ENSG00000166311.5182.8070082.108101.154605.654904.04380K562SRSF4
SMPD1ENSG00000166311.5158.6845084.834400.903304.196502.85870K562SRSF5
SMPD1ENSG00000166311.5177.5638090.898300.965904.939303.97900K562TARDBP
SMPD1ENSG00000166311.5159.1281087.683100.859703.909902.91380K562TIA1
SMPD1ENSG00000166311.5180.41500119.809600.590502.169601.34710K562TRIM56
SMPD1ENSG00000166311.5306.74900224.093500.452902.507001.30460K562TROVE2
SMPD1ENSG00000166311.5394.49950223.920100.816907.975406.83200K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMPD1 is not available on ENCORE database.





1 RBPs can affect the splicing of SMPD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXESMPD1ENSG00000166311.5chr11+641444564146176414846641492364126136413386641512564152710.394000.000050.004901includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMPD1 is not avaliable on ENCORE database.