SLC48A1

General Information

Gene Name       : SLC48A1
Gene ID             : ENSG00000211584.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC48A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC48A1ENSG00000211584.130.991.101.04ENCSR000AEF
HepG2SLC48A1ENSG00000211584.133.272.913.09ENCSR985KAT
K562SLC48A1ENSG00000211584.1320.6920.4820.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC48A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC48A1 RNA is bound by 11 proteins.  







eCLIP assay for SLC48A1 is not avaliable on ENCORE database.





11 proteins are bound to SLC48A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr124817276648172842+3'-UTR,CDS,intron-Proximal3.165253.73797K562CSTF2T
chr124817523848175326+3'-UTR,intron-Distal3.2143110.85097K562UPF1
chr124817523448175317+3'-UTR,intron-Distal3.6972812.87939K562PABPC4
chr124817502248175066+3'-UTR,intron-Distal3.640195.75623K562FAM120A
chr124817486848174943+3'-UTR,intron-Distal3.7580211.02176K562UPF1
chr124817483748174918+3'-UTR,intron-Distal3.150917.59396K562YBX3
chr124817412248174180+3'-UTR,intron-Distal,intron-Proximal4.547215.20653K562LIN28B
chr124816702748167143+5'-UTR,CDS,intron-Distal3.907334.32969K562DDX3X
chr124816704048167075+5'-UTR,intron-Distal4.399317.28749K562YBX3
chr124816707548167082+5'-UTR,intron-Distal4.261266.42513K562YBX3
chr124816714348167222+CDS,intron-Distal,intron-Proximal3.685047.60655K562DDX3X
chr124816724848167301+intron-Distal,intron-Proximal4.541203.79905K562AGGF1
chr124815369748153719+intron-Distal6.076175.18024K562WRN
chr124817031548170375+intron-Distal4.433824.27047K562AKAP8L
chr124816888348168932+intron-Distal4.062723.57893K562EWSR1
chr124817011748170168+intron-Distal3.869323.14687K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC48A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC48A1 is not available on ENCORE database.

  • 115 RBPs can affect the levels of SLC48A1.  








The Knockdown/knockout RNA-Seq assay for SLC48A1 is not available on ENCORE database.





115 RBPs can affect the gene expression of SLC48A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC48A1ENSG00000211584.9302.04380176.168500.777703.521902.46330HepG2ABCF1
SLC48A1ENSG00000211584.9334.08040182.532900.871904.747104.07410HepG2AKAP1
SLC48A1ENSG00000211584.9239.85440137.065800.807203.875302.64710HepG2AKAP8
SLC48A1ENSG00000211584.9272.10050206.116400.400602.067701.45800HepG2AUH
SLC48A1ENSG00000211584.9448.77190210.232301.0939010.948709.86040HepG2BOP1
SLC48A1ENSG00000211584.9290.78640180.028200.691603.167802.12010HepG2CCAR1
SLC48A1ENSG00000211584.9277.80300115.922501.2608012.7562011.53900HepG2CKAP4
SLC48A1ENSG00000211584.9271.6757092.451201.555009.793508.38810HepG2CNOT7
SLC48A1ENSG00000211584.9217.48970137.736500.658904.005403.13950HepG2DAZAP1
SLC48A1ENSG00000211584.9166.5842084.391800.981004.822803.31740HepG2DDX1
SLC48A1ENSG00000211584.9227.40560102.189101.153907.314806.26370HepG2DDX21
SLC48A1ENSG00000211584.9373.81100174.815001.096408.377607.33870HepG2DDX3X
SLC48A1ENSG00000211584.9276.15990150.258500.878002.806402.18410HepG2DDX6
SLC48A1ENSG00000211584.9169.71300110.935100.613302.505401.85610HepG2DKC1
SLC48A1ENSG00000211584.9159.6433082.754100.947804.754203.85420HepG2DNAJC21
SLC48A1ENSG00000211584.9158.8825082.008300.954005.444204.57510HepG2DNAJC2
SLC48A1ENSG00000211584.9203.89640133.600000.609802.478101.37420HepG2EIF2S2
SLC48A1ENSG00000211584.9496.27750159.491001.6376018.7286017.07840HepG2EIF4A3
SLC48A1ENSG00000211584.9589.18500236.646201.3159022.2325020.80650HepG2ETF1
SLC48A1ENSG00000211584.9295.57760177.877100.732603.297302.46340HepG2FIP1L1
SLC48A1ENSG00000211584.9111.6745065.521000.769202.402101.57400HepG2GEMIN5
SLC48A1ENSG00000211584.9183.99230110.699200.732903.931602.78160HepG2HDGF
SLC48A1ENSG00000211584.9136.1134078.115900.801002.710001.35780HepG2HNRNPA0
SLC48A1ENSG00000211584.9161.3011083.546800.949003.940703.18870HepG2HNRNPA1
SLC48A1ENSG00000211584.9261.0253092.925301.4899011.162009.84850HepG2HNRNPC
SLC48A1ENSG00000211584.9123.64640208.79400-0.755903.243002.56800HepG2HNRNPLL
SLC48A1ENSG00000211584.9183.45440122.697600.580202.174301.33200HepG2HNRNPM
SLC48A1ENSG00000211584.9217.7040092.311301.237709.738808.65660HepG2HNRNPU
SLC48A1ENSG00000211584.9261.59070149.233700.809603.840302.38860HepG2HSPD1
SLC48A1ENSG00000211584.9150.6357094.293800.675702.966002.20940HepG2ILF2
SLC48A1ENSG00000211584.9146.1345088.031600.731102.517801.39450HepG2KHDRBS1
SLC48A1ENSG00000211584.9391.74270190.138501.042807.345805.97910HepG2LARP4
SLC48A1ENSG00000211584.9240.12950161.105600.575702.337801.73320HepG2MAGOH
SLC48A1ENSG00000211584.9217.84420143.914500.598002.461501.69690HepG2MSI2
SLC48A1ENSG00000211584.9130.94890212.93810-0.701402.288701.41320HepG2MTPAP
SLC48A1ENSG00000211584.9244.66070165.784900.561402.209901.64180HepG2NCBP2
SLC48A1ENSG00000211584.9236.02210141.419800.738803.183201.65030HepG2NKRF
SLC48A1ENSG00000211584.9226.64550137.809300.717704.010303.30740HepG2PCBP1
SLC48A1ENSG00000211584.9238.4882097.350401.292606.894805.68550HepG2PRPF8
SLC48A1ENSG00000211584.9216.56450140.212300.627103.146502.57050HepG2PTBP1
SLC48A1ENSG00000211584.9219.79610138.423500.667004.237503.53720HepG2PUM1
SLC48A1ENSG00000211584.9195.72730138.315600.500802.116501.52600HepG2PUM2
SLC48A1ENSG00000211584.9199.85620118.106000.758804.270403.53490HepG2PUS1
SLC48A1ENSG00000211584.9292.82040197.793100.565903.348702.79410HepG2RBM22
SLC48A1ENSG00000211584.9224.98060137.832300.706803.415802.67290HepG2RBM25
SLC48A1ENSG00000211584.9272.74440156.054300.805404.880604.19790HepG2NELFE
SLC48A1ENSG00000211584.9661.37660262.795401.3314019.8533018.36460HepG2RPLP0
SLC48A1ENSG00000211584.9324.7480071.613602.1809025.4520023.89960HepG2RPS19
SLC48A1ENSG00000211584.9176.64840117.505900.588002.005601.31610HepG2RPS2
SLC48A1ENSG00000211584.9162.4238071.864901.176305.752404.41030HepG2SERBP1
SLC48A1ENSG00000211584.9145.8909059.552001.292602.926601.52500HepG2SF1
SLC48A1ENSG00000211584.9373.04230145.277501.3604011.429109.99450HepG2SF3A3
SLC48A1ENSG00000211584.9196.9852057.805001.768704.990502.96120HepG2SFPQ
SLC48A1ENSG00000211584.9138.9394095.876000.535101.882301.33440HepG2SMN1
SLC48A1ENSG00000211584.9194.26270113.562200.774403.371702.30290HepG2SMNDC1
SLC48A1ENSG00000211584.9161.3179053.236901.599304.626802.83490HepG2SNRNP200
SLC48A1ENSG00000211584.9319.74600223.401100.517203.274002.74330HepG2SRFBP1
SLC48A1ENSG00000211584.9406.63240152.386301.4159017.1277016.16420HepG2SRSF1
SLC48A1ENSG00000211584.9139.31630222.36990-0.674602.511401.56110HepG2SRSF3
SLC48A1ENSG00000211584.9216.13980128.752300.747304.619103.84640HepG2SRSF5
SLC48A1ENSG00000211584.9227.37580146.415500.634903.787403.08040HepG2SUCLG1
SLC48A1ENSG00000211584.9184.37260120.070400.618602.673201.74630HepG2SUPT6H
SLC48A1ENSG00000211584.9286.10520136.942801.062908.776407.86910HepG2TAF15
SLC48A1ENSG00000211584.9309.56100203.503900.605103.178802.40740HepG2TARDBP
SLC48A1ENSG00000211584.9703.1453089.716502.9703079.4169077.43000HepG2TIAL1
SLC48A1ENSG00000211584.9178.3848090.498300.978904.145603.48340HepG2TRIM56
SLC48A1ENSG00000211584.9292.5518061.906902.240408.672206.83240HepG2U2AF2
SLC48A1ENSG00000211584.9184.58320128.838600.518602.252801.61180HepG2UPF1
SLC48A1ENSG00000211584.9250.62920124.389201.010607.695106.77700HepG2UTP3
SLC48A1ENSG00000211584.9200.18010122.308900.710702.806201.74450HepG2XRCC6
SLC48A1ENSG00000211584.9272.96810141.698300.945808.195307.38320HepG2ZNF622
SLC48A1ENSG00000211584.91785.885101372.029900.380203.170201.84400K562ABCF1
SLC48A1ENSG00000211584.91512.186901886.91670-0.319404.306203.62540K562AGGF1
SLC48A1ENSG00000211584.91419.389101963.38020-0.468105.390604.46200K562AKAP8L
SLC48A1ENSG00000211584.91536.973302059.97880-0.422506.458204.98630K562ATP5C1
SLC48A1ENSG00000211584.91293.46520912.902100.502604.446503.33030K562BOP1
SLC48A1ENSG00000211584.91405.12740955.645500.556104.924902.95610K562BUD13
SLC48A1ENSG00000211584.91850.100501277.228000.534504.690102.72820K562CKAP4
SLC48A1ENSG00000211584.92439.959401110.334101.1358010.827108.72520K562CNOT7
SLC48A1ENSG00000211584.91372.46940970.639900.499705.749404.62580K562CPSF6
SLC48A1ENSG00000211584.91629.086201294.904000.331103.316501.98800K562DDX21
SLC48A1ENSG00000211584.91374.69840844.049800.703604.806202.95120K562DHX30
SLC48A1ENSG00000211584.9848.08560652.079800.379103.706402.28860K562EIF2S1
SLC48A1ENSG00000211584.9815.53950558.554400.546006.322304.44930K562EIF4B
SLC48A1ENSG00000211584.9695.39120541.407100.361002.789801.49520K562EWSR1
SLC48A1ENSG00000211584.91613.451601156.114700.480804.885303.15450K562EXOSC5
SLC48A1ENSG00000211584.91641.45120986.209600.734904.182703.12690K562FIP1L1
SLC48A1ENSG00000211584.91341.94710987.674700.442103.597802.61770K562FMR1
SLC48A1ENSG00000211584.91193.97330837.174500.512104.264703.10660K562FTO
SLC48A1ENSG00000211584.9174.95200365.05580-1.061207.512206.22830K562G3BP2
SLC48A1ENSG00000211584.91494.88030926.692600.689809.426007.95200K562GPKOW
SLC48A1ENSG00000211584.9886.63520635.280000.480804.126601.62470K562GRWD1
SLC48A1ENSG00000211584.91695.28310996.778100.766104.336002.08190K562HNRNPA0
SLC48A1ENSG00000211584.91243.345501009.573800.300402.385901.39250K562HNRNPA1
SLC48A1ENSG00000211584.91660.483101039.476200.675603.747901.90080K562HNRNPAB
SLC48A1ENSG00000211584.9873.42630652.743500.420103.388502.11840K562HNRNPF
SLC48A1ENSG00000211584.91528.965601191.937300.359103.311502.14330K562HNRNPL
SLC48A1ENSG00000211584.92120.086101337.131000.664908.878607.46790K562HSPD1
SLC48A1ENSG00000211584.9862.49680585.328600.559203.890202.58780K562IGF2BP2
SLC48A1ENSG00000211584.91126.795801566.45310-0.475306.273703.46800K562CCAR2
SLC48A1ENSG00000211584.9963.04900707.758100.444303.879802.18190K562LARP7
SLC48A1ENSG00000211584.9486.74690614.80720-0.337002.189801.43690K562MAGOH
SLC48A1ENSG00000211584.91779.779002334.34480-0.391303.804002.70840K562MBNL1
SLC48A1ENSG00000211584.91417.67610904.567900.648108.780607.15560K562METAP2
SLC48A1ENSG00000211584.9956.509501147.89170-0.263102.402901.64880K562MTPAP
SLC48A1ENSG00000211584.91257.757101636.19360-0.379502.129601.37880K562NAA15
SLC48A1ENSG00000211584.91849.028801275.518500.5356010.614609.28210K562NSUN2
SLC48A1ENSG00000211584.91008.28600719.677100.486403.483301.81600K562NUSAP1
SLC48A1ENSG00000211584.92091.410001066.715600.971208.644006.47560K562PABPC1
SLC48A1ENSG00000211584.91144.45050713.652000.681308.606406.04970K562PHF6
SLC48A1ENSG00000211584.91926.868301397.323600.463506.349704.30410K562PNPT1
SLC48A1ENSG00000211584.91575.066601119.501600.492504.838203.70740K562PPIG
SLC48A1ENSG00000211584.91551.63130988.459700.650403.556901.49310K562PPIL4
SLC48A1ENSG00000211584.9443.41310805.80070-0.861809.507308.11420K562PRPF8
SLC48A1ENSG00000211584.91081.22010655.407200.722108.546006.77320K562PSIP1
SLC48A1ENSG00000211584.92084.035101578.146300.401005.093703.61370K562PUM1
SLC48A1ENSG00000211584.91006.132001947.43620-0.9528016.2200014.94540K562PUS1
SLC48A1ENSG00000211584.91044.000101897.23310-0.8618010.572809.43830K562RBM15
SLC48A1ENSG00000211584.91177.41180597.919300.9775017.9139015.41080K562RCC2
SLC48A1ENSG00000211584.91895.478401258.450900.5908011.021009.47200K562SF3A3
SLC48A1ENSG00000211584.92227.259301117.626100.994705.556803.41970K562SFPQ
SLC48A1ENSG00000211584.9891.81020566.817200.653806.750804.94380K562SRFBP1
SLC48A1ENSG00000211584.9808.07140585.641400.464403.679902.86990K562SRSF1
SLC48A1ENSG00000211584.91390.15990839.832000.727002.263101.32950K562SRSF4
SLC48A1ENSG00000211584.9817.50710553.191400.563405.142503.63100K562SRSF5
SLC48A1ENSG00000211584.91399.195201155.681800.275802.509301.39740K562SRSF7
SLC48A1ENSG00000211584.9616.26470475.763600.373202.549801.32550K562SSB
SLC48A1ENSG00000211584.91637.032201183.568200.467803.960702.41540K562STAU1
SLC48A1ENSG00000211584.91044.32580711.132100.554304.462302.35680K562TFIP11
SLC48A1ENSG00000211584.91214.21700630.398700.9456012.5272010.43270K562TIAL1
SLC48A1ENSG00000211584.9762.64000561.182400.442403.240802.04200K562TRA2A
SLC48A1ENSG00000211584.91382.98760669.656001.0462018.5712015.71070K562TRIM56
SLC48A1ENSG00000211584.9253.96510365.54160-0.525403.376402.49230K562U2AF2
SLC48A1ENSG00000211584.92230.882101672.848400.415204.501002.71630K562UBE2L3
SLC48A1ENSG00000211584.91171.05080825.623500.504104.201602.92110K562UCHL5
SLC48A1ENSG00000211584.91818.089201352.450700.426706.473205.42720K562UPF1
SLC48A1ENSG00000211584.9466.40520806.64980-0.790404.168802.13660K562XRCC6
SLC48A1ENSG00000211584.91139.26200840.872200.438003.281301.92820K562XRN2
SLC48A1ENSG00000211584.91635.595101294.251300.337602.842601.96570K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC48A1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SLC48A1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SLC48A1 is not avaliable on ENCORE database.