RGN

General Information

Gene Name       : RGN
Gene ID             : ENSG00000130988.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RGN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RGNENSG00000130988.120.000.000.00ENCSR000AEF
HepG2RGNENSG00000130988.1224.4750.3437.41ENCSR985KAT
K562RGNENSG00000130988.120.080.060.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RGN is not avaliable on ENCORE database.



Proteins bound to RNA
  • RGN RNA is bound by 6 proteins.  







eCLIP assay for RGN is not avaliable on ENCORE database.





6 proteins are bound to RGN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4693791546937967+5'-UTR5.190233.85934HepG2DDX3X
chrX4695111046951175+CDS,intron-Distal3.153733.79741HepG2GRWD1
chrX4695105346951123+CDS,intron-Distal,intron-Proximal3.247893.42396HepG2U2AF2
chrX4694385946943953+CDS4.366874.69889HepG2GRWD1
chrX4694397246944036+CDS,intron-Proximal4.8857311.25775HepG2PRPF8
chrX4694841846948490+intron-Distal3.712863.04332HepG2SRSF9
chrX4695084946950901+intron-Distal4.486273.82973HepG2HLTF
chrX4695162846951682+intron-Proximal3.766554.54206HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RGN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RGN is not available on ENCORE database.

  • 123 RBPs can affect the levels of RGN.  








The Knockdown/knockout RNA-Seq assay for RGN is not available on ENCORE database.





123 RBPs can affect the gene expression of RGN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RGNENSG00000130988.8316.96570587.60100-0.890509.382507.55990HepG2AATF
RGNENSG00000130988.81076.07700683.836400.654005.781204.47460HepG2ABCF1
RGNENSG00000130988.8169.41540651.08770-1.9423051.3015049.49890HepG2ACO1
RGNENSG00000130988.8562.43300415.032300.438402.704101.71700HepG2ADAR
RGNENSG00000130988.8217.377301993.44290-3.1970055.6551053.75740HepG2AKAP1
RGNENSG00000130988.8531.97080654.11460-0.298202.220901.52580HepG2AKAP8L
RGNENSG00000130988.8740.14910388.270200.930704.241302.14530HepG2APOBEC3C
RGNENSG00000130988.8662.41750509.030500.379902.218401.41360HepG2BCLAF1
RGNENSG00000130988.8615.43060458.457100.424702.658602.07100HepG2BOP1
RGNENSG00000130988.8356.05440512.38140-0.525103.724402.30480HepG2BUD13
RGNENSG00000130988.82208.332001567.086200.494804.954403.93570HepG2CIRBP
RGNENSG00000130988.8258.53800415.79050-0.685503.196302.37070HepG2CNOT7
RGNENSG00000130988.8423.77090563.19960-0.410402.563801.49980HepG2CPSF7
RGNENSG00000130988.8718.95510425.619800.7562010.098208.21730HepG2YBX3
RGNENSG00000130988.8315.18900844.81870-1.4224032.8505031.13980HepG2CELF1
RGNENSG00000130988.8640.60830908.33370-0.503807.023805.92230HepG2DAZAP1
RGNENSG00000130988.8841.39710602.145100.482606.641005.43570HepG2DDX19B
RGNENSG00000130988.81006.77720648.397300.634706.846005.82820HepG2DDX21
RGNENSG00000130988.81115.47480634.427700.8140012.1749010.32300HepG2DDX24
RGNENSG00000130988.8628.630901909.69190-1.6031022.8586021.23980HepG2DDX3X
RGNENSG00000130988.8316.58880529.05530-0.740807.054205.04260HepG2DDX52
RGNENSG00000130988.8337.83250575.89920-0.769504.953303.95540HepG2DDX55
RGNENSG00000130988.81120.84720552.942601.0193015.2487013.13750HepG2DDX5
RGNENSG00000130988.8535.348201640.17190-1.6153025.9284024.32490HepG2DDX6
RGNENSG00000130988.8830.89650403.074001.0435015.4533013.43190HepG2DHX30
RGNENSG00000130988.81557.96080622.904501.3225045.8015043.91900HepG2DKC1
RGNENSG00000130988.8587.47210417.901100.491304.404503.53280HepG2DNAJC21
RGNENSG00000130988.8690.442501577.02780-1.1916015.5659014.23120HepG2EIF2S1
RGNENSG00000130988.8286.93020512.45780-0.836705.885904.60180HepG2EIF3D
RGNENSG00000130988.81100.15110612.253900.8454013.3506011.35120HepG2EIF3G
RGNENSG00000130988.81088.415401742.94180-0.679306.399305.42720HepG2EIF4A3
RGNENSG00000130988.8770.220301696.72990-1.1394013.2353011.79590HepG2EIF4B
RGNENSG00000130988.81228.87410896.173300.455406.551305.36250HepG2EIF4G1
RGNENSG00000130988.81336.13150858.468400.638107.352106.05310HepG2EIF4G2
RGNENSG00000130988.8911.09930592.404100.620903.611902.37310HepG2ESF1
RGNENSG00000130988.8435.99850636.19470-0.545104.673903.59320HepG2EWSR1
RGNENSG00000130988.8314.70390457.97620-0.541303.995602.56410HepG2FAM120A
RGNENSG00000130988.8416.94250617.85810-0.567404.879503.42430HepG2FASTKD2
RGNENSG00000130988.8256.73680690.51970-1.4274017.2581015.62250HepG2FIP1L1
RGNENSG00000130988.8703.32440479.381600.552904.224002.68100HepG2FKBP4
RGNENSG00000130988.8770.74470421.631000.870203.652502.47990HepG2FTO
RGNENSG00000130988.8799.263301310.04000-0.712909.347907.95070HepG2FUBP3
RGNENSG00000130988.8342.91590724.62690-1.079409.706707.78350HepG2FUS
RGNENSG00000130988.8664.379901758.12960-1.4040020.7381019.02990HepG2FXR1
RGNENSG00000130988.8784.421301631.14690-1.0562013.1828011.79100HepG2G3BP1
RGNENSG00000130988.8335.24260456.28260-0.444702.204301.41100HepG2GEMIN5
RGNENSG00000130988.81472.59540477.034801.6261031.0724029.20710HepG2GPKOW
RGNENSG00000130988.8231.21220384.87150-0.735203.907102.58600HepG2GRSF1
RGNENSG00000130988.8447.44260682.94340-0.610103.323201.59180HepG2GTF2F1
RGNENSG00000130988.81136.86090421.905101.4300029.6737027.97830HepG2HNRNPA1
RGNENSG00000130988.8554.13030360.145300.621503.721001.95020HepG2HNRNPD
RGNENSG00000130988.8648.60830389.110300.737109.684108.44320HepG2HNRNPF
RGNENSG00000130988.8640.938501651.16120-1.3652019.5782017.87060HepG2HNRNPK
RGNENSG00000130988.8341.08440827.40620-1.2785032.0099030.02610HepG2HNRNPL
RGNENSG00000130988.81086.13970455.247901.2544019.9287018.47720HepG2HNRNPLL
RGNENSG00000130988.8199.33540476.45410-1.2571015.5514013.61100HepG2HNRNPM
RGNENSG00000130988.8624.77870466.200100.422303.921203.21080HepG2HNRNPU
RGNENSG00000130988.8941.18030383.160101.2964026.6563024.69550HepG2IGF2BP1
RGNENSG00000130988.8801.528201658.10480-1.0487012.4979011.18140HepG2IGF2BP2
RGNENSG00000130988.8589.323701555.73900-1.400508.426706.78370HepG2IGF2BP3
RGNENSG00000130988.8374.50010476.20590-0.346602.735602.00640HepG2ILF2
RGNENSG00000130988.81173.985601667.62110-0.506403.402402.27450HepG2KHSRP
RGNENSG00000130988.8385.43760602.95680-0.645605.479703.89120HepG2LARP7
RGNENSG00000130988.81006.692101758.74140-0.804909.564008.36150HepG2MAGOH
RGNENSG00000130988.8523.176001768.65410-1.7573026.6570024.87740HepG2MATR3
RGNENSG00000130988.8155.02790536.34550-1.7906014.7244012.46860HepG2METAP2
RGNENSG00000130988.8857.69360464.410000.885003.337902.26680HepG2MTPAP
RGNENSG00000130988.8563.490201810.37220-1.6838025.6244023.83510HepG2NCBP2
RGNENSG00000130988.8539.13710900.70470-0.7404010.492909.04000HepG2NOL12
RGNENSG00000130988.81404.41450403.703001.7985033.7616031.63330HepG2NSUN2
RGNENSG00000130988.8975.997001612.51310-0.724404.448503.54550HepG2PABPC4
RGNENSG00000130988.8248.34700461.44280-0.8938010.493309.02380HepG2PARN
RGNENSG00000130988.8735.803701559.23630-1.0834034.1523032.42800HepG2PCBP1
RGNENSG00000130988.8590.75200415.811100.506504.732703.79500HepG2PPIL4
RGNENSG00000130988.8235.35290467.53630-0.9903012.5221011.05450HepG2PRPF4
RGNENSG00000130988.8549.756901586.56030-1.5290059.5039057.70890HepG2PTBP1
RGNENSG00000130988.81477.92730859.816400.781409.354608.34740HepG2PUF60
RGNENSG00000130988.8374.76210912.75050-1.2842035.9115034.26810HepG2PUM1
RGNENSG00000130988.8789.605401718.32870-1.1218030.1906028.47320HepG2QKI
RGNENSG00000130988.8249.01020661.92130-1.4105011.168409.82120HepG2RAVER1
RGNENSG00000130988.8401.61210735.87950-0.8737011.6523010.07790HepG2RBM15
RGNENSG00000130988.8246.32920813.55600-1.7237040.8830039.35080HepG2RBM22
RGNENSG00000130988.8894.646101559.47680-0.8017013.7363012.30130HepG2RBM25
RGNENSG00000130988.8507.48120727.06580-0.518703.800302.62610HepG2RBM27
RGNENSG00000130988.8817.72170590.409300.469802.800601.73400HepG2RCC2
RGNENSG00000130988.8986.131401765.70670-0.8404022.0952020.85130HepG2NELFE
RGNENSG00000130988.81004.899101644.48420-0.7106016.3638015.06930HepG2RECQL
RGNENSG00000130988.8877.95820419.204601.0664015.0666013.71370HepG2RPLP0
RGNENSG00000130988.8948.14760650.279200.544003.049002.05980HepG2RPS10
RGNENSG00000130988.8229.61130498.62930-1.1188013.2725012.05490HepG2RPS19
RGNENSG00000130988.81021.94500417.364601.2918015.3149013.49320HepG2RPS3A
RGNENSG00000130988.8316.06240439.61780-0.476001.977301.30210HepG2RRP9
RGNENSG00000130988.8532.96970415.164500.360302.811102.16290HepG2SAFB2
RGNENSG00000130988.8482.61160989.21330-1.035409.933008.59510HepG2SF3A3
RGNENSG00000130988.8681.59230450.574800.597004.223103.36810HepG2SF3B1
RGNENSG00000130988.8689.043101651.85170-1.2614043.7333041.92290HepG2SF3B4
RGNENSG00000130988.81154.80680824.465600.486008.190407.08120HepG2SLBP
RGNENSG00000130988.8306.77740484.13970-0.658207.256406.29130HepG2SMN1
RGNENSG00000130988.8326.83580675.11700-1.046609.551907.71060HepG2SMNDC1
RGNENSG00000130988.8361.43840918.86690-1.3461035.4172034.15530HepG2SRFBP1
RGNENSG00000130988.81104.101701724.16020-0.6430014.6853013.77970HepG2SRSF1
RGNENSG00000130988.8675.16780848.96430-0.330502.587801.97770HepG2SRSF5
RGNENSG00000130988.8580.79200382.296700.603206.341005.35750HepG2SRSF7
RGNENSG00000130988.8572.893901402.68290-1.2918045.7332044.03470HepG2SRSF9
RGNENSG00000130988.81700.97580797.768301.0922037.6752036.29080HepG2SSB
RGNENSG00000130988.8420.64760676.31790-0.685105.184903.49110HepG2SSRP1
RGNENSG00000130988.8624.84970965.48840-0.6277010.140009.07330HepG2SUCLG1
RGNENSG00000130988.81077.53550573.339500.910209.607608.47390HepG2SUPV3L1
RGNENSG00000130988.81213.037101549.69970-0.353404.231703.56040HepG2TAF15
RGNENSG00000130988.8215.81180443.86690-1.040407.509206.39100HepG2TARDBP
RGNENSG00000130988.81203.81260664.297600.857604.436603.10990HepG2TBRG4
RGNENSG00000130988.8837.780301424.00820-0.7653012.9311011.15530HepG2TIA1
RGNENSG00000130988.8962.53720452.954001.0874020.6136019.48180HepG2TIAL1
RGNENSG00000130988.8301.80020457.05300-0.598805.635204.88280HepG2TRIM56
RGNENSG00000130988.8431.28240783.78170-0.861802.348001.44760HepG2U2AF2
RGNENSG00000130988.8707.20110525.111000.429402.325801.41150HepG2UPF2
RGNENSG00000130988.8383.14560846.98010-1.1444024.4341022.92030HepG2UTP3
RGNENSG00000130988.8672.40810373.826100.846906.390904.72730HepG2XPO5
RGNENSG00000130988.8298.04000650.96850-1.127108.832106.66640HepG2XRCC5
RGNENSG00000130988.8479.30080727.97610-0.603003.640002.42240HepG2XRCC6
RGNENSG00000130988.81263.33360564.388701.1624018.2076016.39730HepG2XRN2
RGNENSG00000130988.8900.71790461.381300.9650013.8289012.51870HepG2ZC3H8
RGNENSG00000130988.8480.42440964.84100-1.0060025.9688024.72260HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RGN is not available on ENCORE database.





14 RBPs can affect the splicing of RGN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERGNENSG00000130988.8chrX+469397154694033546937774469381084694052846940592-0.131000.000680.05823excludedHepG2G3BP1
SERGNENSG00000130988.8chrX+469491744694939046943816469439994695107646951208-0.213000.000360.02735excludedHepG2RBM22
SERGNENSG00000130988.8chrX+4694917446949390469438164694399946951076469512080.120000.004230.08431includedHepG2HNRNPK
SERGNENSG00000130988.8chrX+469491744694939046943816469439994695107646951208-0.216000.000000.00003excludedHepG2QKI
SERGNENSG00000130988.8chrX+469397154694033546937774469381084694052846940706-0.165000.000110.02647excludedHepG2TIA1
SERGNENSG00000130988.8chrX+469397154694033546937774469381084694052846940592-0.139000.001370.07080excludedHepG2NCBP2
SERGNENSG00000130988.8chrX+469397154694033546937774469381084694052846940592-0.163000.000500.04423excludedHepG2DDX6
SERGNENSG00000130988.8chrX+4695107646951208469438164694399946951459469516140.077000.000440.05992includedHepG2HNRNPUL1
SERGNENSG00000130988.8chrX+469491744694939046943816469439994695107646951208-0.436000.000000.00000excludedHepG2SRSF1
SERGNENSG00000130988.8chrX+4693971546940335469377744693810846940528469407060.260000.000020.00534includedHepG2SSB
SERGNENSG00000130988.8chrX+469397154694033546937774469381084694052846940706-0.167000.000020.00212excludedHepG2PCBP1
SERGNENSG00000130988.8chrX+469491744694939046943816469439994695107646951208-0.133000.000490.05433excludedHepG2TAF15
SERGNENSG00000130988.8chrX+4694917446949390469438164694399946951076469512080.206000.000000.00015includedHepG2SRSF9
SERGNENSG00000130988.8chrX+4695107646951208469438164694399946951459469516140.100000.000890.09069includedHepG2KHSRP
SERGNENSG00000130988.8chrX+469397154694033546937774469381084694052846940592-0.138000.000210.03745excludedHepG2KHSRP
RIRGNENSG00000130988.8chrX+4693971546940706469397154694033546940528469407060.118000.002340.06784includedHepG2TIA1
RIRGNENSG00000130988.8chrX+4693971546940706469397154694033546940528469407060.093000.006370.06089includedHepG2QKI
RIRGNENSG00000130988.8chrX+4693971546940706469397154694033546940528469407060.135000.000790.02022includedHepG2KHSRP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RGN is not avaliable on ENCORE database.