PDGFRB

General Information

Gene Name       : PDGFRB
Gene ID             : ENSG00000113721.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDGFRB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDGFRBENSG00000113721.130.260.610.43ENCSR000AEF
HepG2PDGFRBENSG00000113721.137.195.126.16ENCSR985KAT
K562PDGFRBENSG00000113721.130.020.060.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDGFRB is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDGFRB RNA is bound by 1 proteins.  







eCLIP assay for PDGFRB is not avaliable on ENCORE database.





1 proteins are bound to PDGFRB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5149510989149511093-intron-Distal5.148105.04993HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDGFRB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDGFRB is not available on ENCORE database.

  • 126 RBPs can affect the levels of PDGFRB.  








The Knockdown/knockout RNA-Seq assay for PDGFRB is not available on ENCORE database.





126 RBPs can affect the gene expression of PDGFRB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDGFRBENSG00000113721.9266.22380372.00940-0.482702.594501.55280HepG2AATF
PDGFRBENSG00000113721.959.69240575.78390-3.2699055.7344052.90310HepG2ABCF1
PDGFRBENSG00000113721.9122.08080542.24290-2.1511051.0976049.30290HepG2ACO1
PDGFRBENSG00000113721.9234.20640457.82070-0.967008.907407.24450HepG2ADAR
PDGFRBENSG00000113721.9143.28220704.20900-2.2971036.5367034.90040HepG2AKAP1
PDGFRBENSG00000113721.9174.32060544.73320-1.6438032.7819030.62230HepG2AKAP8L
PDGFRBENSG00000113721.92046.62420582.644301.8125045.5916043.06140HepG2ASCC1
PDGFRBENSG00000113721.9346.33730519.57020-0.585104.062202.38600HepG2ATP5C1
PDGFRBENSG00000113721.91356.83530921.236000.558509.664508.51130HepG2AUH
PDGFRBENSG00000113721.9166.82440382.05420-1.195408.897907.17520HepG2BCCIP
PDGFRBENSG00000113721.9212.43060435.67310-1.0363010.493209.13770HepG2CALR
PDGFRBENSG00000113721.9198.54870759.51980-1.9356015.4894013.34430HepG2CCAR1
PDGFRBENSG00000113721.9239.06890553.56170-1.2113013.2950011.73960HepG2CIRBP
PDGFRBENSG00000113721.9200.85830542.05610-1.4323028.3504026.72270HepG2CKAP4
PDGFRBENSG00000113721.9854.23660474.157300.8492010.736708.73270HepG2CPSF7
PDGFRBENSG00000113721.951.02650236.00600-2.2095019.9204017.54020HepG2CSTF2
PDGFRBENSG00000113721.9189.11230501.46530-1.4069022.7222020.89410HepG2DDX19B
PDGFRBENSG00000113721.9261.06650470.13530-0.848708.569006.71320HepG2DDX1
PDGFRBENSG00000113721.953.81560410.52630-2.9314048.3176046.00560HepG2DDX21
PDGFRBENSG00000113721.9160.53620401.65940-1.3231015.0716013.06250HepG2DDX24
PDGFRBENSG00000113721.9158.23880351.48110-1.151307.070005.10320HepG2DDX27
PDGFRBENSG00000113721.9263.29240454.14210-0.786507.245305.20740HepG2DDX52
PDGFRBENSG00000113721.9104.60580375.63360-1.8444018.0489016.32770HepG2DDX55
PDGFRBENSG00000113721.9360.64890188.232200.938003.752902.62000HepG2DDX59
PDGFRBENSG00000113721.9199.55390493.21730-1.3054015.1958013.08920HepG2DDX5
PDGFRBENSG00000113721.92908.06500579.572002.3269023.6332022.07480HepG2DDX6
PDGFRBENSG00000113721.9191.34650444.63000-1.2164013.6476011.71620HepG2DHX30
PDGFRBENSG00000113721.9100.70960518.76170-2.3649049.5531047.61660HepG2DKC1
PDGFRBENSG00000113721.9216.62480541.78350-1.3225015.1592013.27830HepG2EEF2
PDGFRBENSG00000113721.9163.77940451.59680-1.4633017.5013014.86410HepG2EFTUD2
PDGFRBENSG00000113721.9357.83520557.00860-0.638404.485103.74060HepG2EIF2S1
PDGFRBENSG00000113721.9227.38420436.77100-0.941709.128907.16630HepG2EIF2S2
PDGFRBENSG00000113721.9175.51630439.77080-1.3251012.4420010.67760HepG2EIF3D
PDGFRBENSG00000113721.9178.71240387.62770-1.1170011.659709.76100HepG2EIF3G
PDGFRBENSG00000113721.986.56850615.48830-2.8298049.9295047.29510HepG2EIF4A3
PDGFRBENSG00000113721.9849.24800631.530600.427203.101502.24130HepG2EIF4G2
PDGFRBENSG00000113721.9229.20470498.76590-1.1217011.957409.95760HepG2ESF1
PDGFRBENSG00000113721.9144.96780529.80700-1.8697032.2453029.76760HepG2EWSR1
PDGFRBENSG00000113721.9255.60820581.40060-1.1856011.4551010.04170HepG2FIP1L1
PDGFRBENSG00000113721.9764.72770430.815500.827807.878306.58620HepG2FUBP3
PDGFRBENSG00000113721.9185.29870442.52470-1.2559010.313908.35860HepG2FUS
PDGFRBENSG00000113721.971.38410391.54820-2.4555034.7883032.22160HepG2GEMIN5
PDGFRBENSG00000113721.9248.24770495.92350-0.998309.054607.18310HepG2GNB2L1
PDGFRBENSG00000113721.9881.27210517.644900.7675013.7382011.82360HepG2HDGF
PDGFRBENSG00000113721.950.49960465.40300-3.2041053.0579050.99140HepG2HNRNPA1
PDGFRBENSG00000113721.9410.78800614.13290-0.580206.141004.84220HepG2HNRNPA2B1
PDGFRBENSG00000113721.9624.05020396.434500.654504.401402.63010HepG2HNRNPAB
PDGFRBENSG00000113721.9322.22430517.68780-0.684005.212604.28400HepG2HNRNPC
PDGFRBENSG00000113721.9386.95730252.957000.613204.728803.82180HepG2HNRNPF
PDGFRBENSG00000113721.9895.85400608.713800.557408.622407.49720HepG2HNRNPL
PDGFRBENSG00000113721.993.45170179.28000-0.939902.234801.66290HepG2HNRNPLL
PDGFRBENSG00000113721.9334.56870249.087400.425602.051201.42170HepG2IGF2BP1
PDGFRBENSG00000113721.9277.03250585.61080-1.0799011.3532010.08410HepG2IGF2BP2
PDGFRBENSG00000113721.9196.77270549.73380-1.482206.690105.19990HepG2IGF2BP3
PDGFRBENSG00000113721.9257.09850467.89280-0.863905.465103.57320HepG2ILF3
PDGFRBENSG00000113721.91059.41110603.969600.810603.925302.43060HepG2KRR1
PDGFRBENSG00000113721.9200.84610802.49720-1.9984014.0127012.17950HepG2LARP4
PDGFRBENSG00000113721.9212.06970510.13880-1.2664015.1406012.54000HepG2LIN28B
PDGFRBENSG00000113721.9165.91920621.43650-1.9051029.1293027.17890HepG2MAGOH
PDGFRBENSG00000113721.9195.59240411.40850-1.072709.773806.97170HepG2MARK2
PDGFRBENSG00000113721.9115.81770624.87940-2.4317038.5831036.43880HepG2MATR3
PDGFRBENSG00000113721.9142.18300470.53440-1.7266024.6771022.61270HepG2MSI2
PDGFRBENSG00000113721.91150.23610662.625000.795603.205802.38730HepG2NOL12
PDGFRBENSG00000113721.9171.56800344.90400-1.007405.057703.55240HepG2NONO
PDGFRBENSG00000113721.9242.67590438.69500-0.854204.524603.36910HepG2PABPC1
PDGFRBENSG00000113721.9218.45060418.87460-0.939206.111904.61310HepG2PCBP2
PDGFRBENSG00000113721.9232.63580430.41420-0.887705.131203.09840HepG2PNPT1
PDGFRBENSG00000113721.9188.00770548.77670-1.5454029.1582027.17100HepG2PRPF4
PDGFRBENSG00000113721.9173.13710440.30370-1.3466010.869908.65040HepG2PRPF6
PDGFRBENSG00000113721.941.05110289.79870-2.8196029.8409027.64990HepG2PRPF8
PDGFRBENSG00000113721.9261.41210554.38130-1.084606.259003.60820HepG2PSIP1
PDGFRBENSG00000113721.9438.47580571.10110-0.381202.920802.36150HepG2PTBP1
PDGFRBENSG00000113721.9270.15610632.53460-1.2274017.1720015.86090HepG2PUF60
PDGFRBENSG00000113721.9396.10830670.97340-0.760406.213005.22220HepG2PUM2
PDGFRBENSG00000113721.9348.46790552.29950-0.664407.883706.93280HepG2PUS1
PDGFRBENSG00000113721.91092.71410618.467500.8210013.6787012.44150HepG2QKI
PDGFRBENSG00000113721.9205.68040404.10530-0.974305.044504.10650HepG2RAVER1
PDGFRBENSG00000113721.9278.64340164.656200.758903.606701.61520HepG2RBM14
PDGFRBENSG00000113721.9866.07100669.040700.372303.069402.17040HepG2RBM15
PDGFRBENSG00000113721.9223.08700884.07440-1.9866053.8794052.16150HepG2RBM22
PDGFRBENSG00000113721.9270.48050585.89900-1.1151012.3808010.27760HepG2RBM27
PDGFRBENSG00000113721.9160.92630475.77630-1.5639015.5087013.10440HepG2RCC2
PDGFRBENSG00000113721.9106.89510635.56160-2.5718062.5834060.82590HepG2NELFE
PDGFRBENSG00000113721.9381.06050591.97390-0.635506.637705.74210HepG2RECQL
PDGFRBENSG00000113721.981.83680272.54180-1.7357016.2408014.85450HepG2RPLP0
PDGFRBENSG00000113721.9176.48130397.17070-1.170208.237206.67970HepG2RPS10
PDGFRBENSG00000113721.957.20330427.95380-2.9033051.2634049.24050HepG2RPS19
PDGFRBENSG00000113721.9211.20820540.34710-1.3552016.7194014.87200HepG2RPS2
PDGFRBENSG00000113721.9238.08150482.07190-1.017807.833706.50480HepG2RPS3A
PDGFRBENSG00000113721.9357.38730551.58470-0.626104.849603.41520HepG2RPS5
PDGFRBENSG00000113721.9148.34530286.67360-0.950505.262504.21060HepG2RRP9
PDGFRBENSG00000113721.9251.65100439.93170-0.805904.429002.47960HepG2RTF1
PDGFRBENSG00000113721.9275.37280457.85440-0.733503.833602.01030HepG2SBDS
PDGFRBENSG00000113721.9176.68790429.45900-1.2813013.3750011.40110HepG2SERBP1
PDGFRBENSG00000113721.939.73050484.45120-3.6080055.1871052.12110HepG2SF3A3
PDGFRBENSG00000113721.9306.62670594.54860-0.9553012.9977011.86510HepG2SF3B4
PDGFRBENSG00000113721.9202.38340394.48990-0.962903.999502.09060HepG2SLTM
PDGFRBENSG00000113721.9190.02060534.05450-1.4908029.8406028.09280HepG2SMN1
PDGFRBENSG00000113721.9573.50210393.851400.542003.071001.39230HepG2SND1
PDGFRBENSG00000113721.9477.09710197.429301.272809.194407.77580HepG2SNRNP70
PDGFRBENSG00000113721.9161.15750998.51120-2.63130104.61730102.66250HepG2SRFBP1
PDGFRBENSG00000113721.989.17670620.59690-2.7989069.9746068.32990HepG2SRSF1
PDGFRBENSG00000113721.9894.09010624.537200.517506.775305.85430HepG2SRSF5
PDGFRBENSG00000113721.9382.75690248.532300.622904.780703.90470HepG2SRSF7
PDGFRBENSG00000113721.940.64840866.91230-4.41460164.84650162.61440HepG2SSB
PDGFRBENSG00000113721.9172.30960419.40650-1.2833011.852009.45950HepG2STIP1
PDGFRBENSG00000113721.9464.75380710.26960-0.611908.266807.28790HepG2SUCLG1
PDGFRBENSG00000113721.9545.47870392.578200.474403.558002.50120HepG2SUPT6H
PDGFRBENSG00000113721.9146.51940373.94550-1.3517010.841609.64880HepG2SUPV3L1
PDGFRBENSG00000113721.9319.42740591.64860-0.889304.265302.95880HepG2TBRG4
PDGFRBENSG00000113721.975.20780499.65520-2.7320055.6513053.94740HepG2TIAL1
PDGFRBENSG00000113721.91628.56430504.173901.6915055.4001053.30630HepG2TRIM56
PDGFRBENSG00000113721.9226.16810349.42580-0.627603.383001.64110HepG2TROVE2
PDGFRBENSG00000113721.964.77640497.34290-2.9407049.6705046.94080HepG2U2AF1
PDGFRBENSG00000113721.9936.44840654.103700.517602.577501.76940HepG2UBE2L3
PDGFRBENSG00000113721.9133.12730220.90660-0.730603.497702.64820HepG2UCHL5
PDGFRBENSG00000113721.9251.52130429.63470-0.772408.143007.04900HepG2UPF1
PDGFRBENSG00000113721.981.67630342.44080-2.0679017.6279015.12280HepG2UPF2
PDGFRBENSG00000113721.946.39260414.79450-3.1604056.2937054.13310HepG2UTP3
PDGFRBENSG00000113721.9213.65160431.80230-1.015107.711505.88530HepG2XPO5
PDGFRBENSG00000113721.9203.23790444.52420-1.129108.699306.92820HepG2XRCC6
PDGFRBENSG00000113721.9110.32350368.10810-1.7384017.3033015.53200HepG2XRN2
PDGFRBENSG00000113721.9138.34490541.57010-1.9689043.8401041.83670HepG2ZC3H8
PDGFRBENSG00000113721.9160.44930472.51510-1.5582029.0877027.79510HepG2ZNF622
PDGFRBENSG00000113721.9216.60840403.94650-0.899106.016504.01140HepG2ZRANB2
PDGFRBENSG00000113721.914.035601.292803.440402.442301.59820K562PSIP1
PDGFRBENSG00000113721.913.052901.185703.460502.495601.55820K562RCC2
PDGFRBENSG00000113721.934.163006.266802.446503.617501.81440K562SERBP1
PDGFRBENSG00000113721.90.4774010.37240-4.441502.470301.69620K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDGFRB is not available on ENCORE database.






No RBPs affect the alternative splcing events of PDGFRB on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PDGFRB is not avaliable on ENCORE database.