NR4A1

General Information

Gene Name       : NR4A1
Gene ID             : ENSG00000123358.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NR4A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NR4A1ENSG00000123358.190.781.351.06ENCSR000AEF
HepG2NR4A1ENSG00000123358.194.702.143.42ENCSR985KAT
K562NR4A1ENSG00000123358.191.761.131.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NR4A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NR4A1 RNA is bound by 2 proteins.  







eCLIP assay for NR4A1 is not avaliable on ENCORE database.





2 proteins are bound to NR4A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125245298652453079+3'-UTR7.6309920.87968K562PUM2
chr125245311752453183+3'-UTR5.608799.86388K562PUM2
chr125244898252449035+CDS,intron-Distal,intron-Proximal4.204036.23016HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NR4A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NR4A1 is not available on ENCORE database.

  • 138 RBPs can affect the levels of NR4A1.  








The Knockdown/knockout RNA-Seq assay for NR4A1 is not available on ENCORE database.





138 RBPs can affect the gene expression of NR4A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NR4A1ENSG00000123358.1599.98030481.89120-2.2690029.7012027.34710HepG2ABCF1
NR4A1ENSG00000123358.15478.79710316.852500.595505.882705.06080HepG2ACO1
NR4A1ENSG00000123358.15152.74760318.30790-1.0593010.629409.24710HepG2AKAP8L
NR4A1ENSG00000123358.1599.95710209.49080-1.067505.892204.92210HepG2CPSF6
NR4A1ENSG00000123358.15754.31660396.696600.9270011.135809.09500HepG2CPSF7
NR4A1ENSG00000123358.1559.81670117.78060-0.977503.900802.64630HepG2CSTF2
NR4A1ENSG00000123358.15317.40850217.758600.543502.029101.46250HepG2CELF1
NR4A1ENSG00000123358.15198.32200293.02480-0.563204.094603.10310HepG2DDX19B
NR4A1ENSG00000123358.1558.86350160.46880-1.446802.880202.18970HepG2DDX21
NR4A1ENSG00000123358.1552.44170175.46580-1.742408.265506.18340HepG2DDX27
NR4A1ENSG00000123358.1576.11850142.02880-0.899902.930301.49760HepG2DDX28
NR4A1ENSG00000123358.15480.33230237.892901.013605.446404.08960HepG2DDX59
NR4A1ENSG00000123358.15154.56010347.53220-1.1690010.178308.38870HepG2DDX5
NR4A1ENSG00000123358.152262.67210269.822203.0678083.3496080.76540HepG2DDX6
NR4A1ENSG00000123358.1561.39830303.13160-2.3037029.9387028.32360HepG2DKC1
NR4A1ENSG00000123358.15211.13440149.545100.497502.462401.84110HepG2DNAJC2
NR4A1ENSG00000123358.15389.98100259.222900.589103.112402.48440HepG2EIF2S1
NR4A1ENSG00000123358.15228.56800365.44230-0.677004.248302.80910HepG2EIF2S2
NR4A1ENSG00000123358.15203.79360319.68660-0.649503.418601.45240HepG2EIF3H
NR4A1ENSG00000123358.1591.37230286.39260-1.648206.224605.27170HepG2EIF4A3
NR4A1ENSG00000123358.15156.31030230.99530-0.563502.630801.81180HepG2EIF4G1
NR4A1ENSG00000123358.15160.96060417.34300-1.3745015.4287013.18120HepG2ESF1
NR4A1ENSG00000123358.15491.48060196.597301.321808.204206.16850HepG2FAM120A
NR4A1ENSG00000123358.1592.76620156.11250-0.750902.980001.66360HepG2FKBP4
NR4A1ENSG00000123358.15462.75090157.806301.5520015.0245012.71570HepG2FUS
NR4A1ENSG00000123358.15144.42000284.83740-0.979902.681201.80650HepG2G3BP2
NR4A1ENSG00000123358.1567.47060168.12600-1.317206.698105.09440HepG2GNB2L1
NR4A1ENSG00000123358.1579.00480237.46780-1.5877010.799409.59130HepG2GPKOW
NR4A1ENSG00000123358.1579.35830156.05990-0.975603.795601.58230HepG2GRWD1
NR4A1ENSG00000123358.15534.14910302.479200.8203010.921309.15840HepG2HDGF
NR4A1ENSG00000123358.15526.38030314.498000.743002.960701.54180HepG2HNRNPA0
NR4A1ENSG00000123358.1597.18530152.30850-0.648201.998101.43850HepG2HNRNPA1
NR4A1ENSG00000123358.1572.62670169.41980-1.222005.932204.94480HepG2HNRNPC
NR4A1ENSG00000123358.15484.70660271.817700.834406.511605.47030HepG2HNRNPK
NR4A1ENSG00000123358.15383.12550213.267300.845108.951607.80610HepG2HNRNPL
NR4A1ENSG00000123358.1596.13040226.62050-1.237207.456206.48150HepG2HNRNPLL
NR4A1ENSG00000123358.15393.02170289.618000.440403.253502.14910HepG2KIF1C
NR4A1ENSG00000123358.15253.79030418.63610-0.722104.084902.55630HepG2KRR1
NR4A1ENSG00000123358.1581.21070165.24790-1.024904.210402.13230HepG2LSM11
NR4A1ENSG00000123358.15103.09430289.29980-1.488605.197904.30510HepG2MAGOH
NR4A1ENSG00000123358.15661.40740230.017801.5237013.1548011.01700HepG2METAP2
NR4A1ENSG00000123358.15202.09070393.65380-0.961908.680107.32270HepG2MSI2
NR4A1ENSG00000123358.15132.73000200.94700-0.598302.280101.59890HepG2NSUN2
NR4A1ENSG00000123358.151148.21950339.536301.757706.176604.81530HepG2PABPC1
NR4A1ENSG00000123358.15427.54090264.975900.690104.447203.54430HepG2PABPC4
NR4A1ENSG00000123358.15543.44270295.041700.881105.780104.95390HepG2PCBP1
NR4A1ENSG00000123358.15273.53030150.108700.865605.061404.09240HepG2PPIL4
NR4A1ENSG00000123358.1557.46170144.59760-1.331406.448405.27190HepG2PRPF8
NR4A1ENSG00000123358.15409.80890300.238400.448702.973602.41000HepG2PTBP1
NR4A1ENSG00000123358.1593.20500221.62280-1.249608.282407.32440HepG2PUF60
NR4A1ENSG00000123358.15359.85150235.267700.613003.459002.81060HepG2PUM1
NR4A1ENSG00000123358.15250.14430322.72900-0.367602.023301.47720HepG2PUS1
NR4A1ENSG00000123358.15856.83430144.040402.5724010.159708.87160HepG2RAVER1
NR4A1ENSG00000123358.15611.05180422.634400.531802.717801.86650HepG2RBM15
NR4A1ENSG00000123358.15218.85270379.70020-0.794906.310905.60570HepG2RBM22
NR4A1ENSG00000123358.15533.12830295.083300.853302.806202.12720HepG2RBM25
NR4A1ENSG00000123358.15170.10130334.11790-0.974008.037707.20110HepG2NELFE
NR4A1ENSG00000123358.1592.90850290.14660-1.642909.467208.32620HepG2RPLP0
NR4A1ENSG00000123358.15407.87980213.962400.930704.910904.11840HepG2RPS19
NR4A1ENSG00000123358.1574.75490183.15510-1.292806.922605.69380HepG2RPS2
NR4A1ENSG00000123358.15137.73290373.35020-1.438703.046202.20840HepG2RPS3A
NR4A1ENSG00000123358.15322.47400143.026201.172803.559202.68250HepG2RRP9
NR4A1ENSG00000123358.15268.26580109.682001.290203.633602.03330HepG2SF1
NR4A1ENSG00000123358.15219.85320412.99540-0.909604.705703.81220HepG2SF3A3
NR4A1ENSG00000123358.15573.80060224.305801.3550017.7574016.13540HepG2SF3B1
NR4A1ENSG00000123358.15229.24290147.357700.637502.264701.40750HepG2SMNDC1
NR4A1ENSG00000123358.15236.26440140.632400.748402.946401.31380HepG2SND1
NR4A1ENSG00000123358.15356.2381098.127001.860007.748305.32850HepG2SNRNP200
NR4A1ENSG00000123358.15165.95060249.58090-0.588802.027801.36380HepG2SNRNP70
NR4A1ENSG00000123358.151554.84790428.861901.8581049.3287047.90160HepG2SRFBP1
NR4A1ENSG00000123358.1580.74420326.24750-2.0145024.6448023.54060HepG2SRSF1
NR4A1ENSG00000123358.15137.01970241.36420-0.816803.482102.34580HepG2SRSF3
NR4A1ENSG00000123358.15326.87060218.826600.578804.025603.29620HepG2SRSF5
NR4A1ENSG00000123358.15354.77660265.433900.418502.723202.17500HepG2SRSF9
NR4A1ENSG00000123358.1538.37820372.36160-3.2783057.9636056.36790HepG2SSB
NR4A1ENSG00000123358.15211.09020324.86500-0.622002.481401.30120HepG2STAU1
NR4A1ENSG00000123358.15346.37880134.634101.363208.753006.70010HepG2SUB1
NR4A1ENSG00000123358.15183.08000293.28960-0.679904.189503.52120HepG2TAF15
NR4A1ENSG00000123358.15110.60460220.90160-0.998005.516804.54650HepG2TARDBP
NR4A1ENSG00000123358.15193.39970410.09350-1.084403.600802.38950HepG2TBRG4
NR4A1ENSG00000123358.15392.86450125.123901.6506015.5175013.57100HepG2TFIP11
NR4A1ENSG00000123358.1561.29440163.51640-1.415608.775507.97510HepG2TIAL1
NR4A1ENSG00000123358.15241.18800144.778700.736203.027801.48900HepG2TRA2A
NR4A1ENSG00000123358.15312.60600164.997200.921808.493507.59060HepG2TRIM56
NR4A1ENSG00000123358.15394.97420114.006601.792506.684805.07650HepG2U2AF2
NR4A1ENSG00000123358.15384.26070229.193700.745404.164303.12630HepG2UBE2L3
NR4A1ENSG00000123358.15181.80340366.26670-1.010505.251504.33810HepG2UPF1
NR4A1ENSG00000123358.1571.42050170.88260-1.258606.056304.52820HepG2UPF2
NR4A1ENSG00000123358.15222.82550376.44900-0.756503.666902.47830HepG2UTP18
NR4A1ENSG00000123358.15188.30320353.61160-0.909104.708703.96030HepG2UTP3
NR4A1ENSG00000123358.15240.87140141.801300.764303.100601.75940HepG2XRCC5
NR4A1ENSG00000123358.1572.71130183.79370-1.337805.104504.12720HepG2XRN2
NR4A1ENSG00000123358.1556.83360243.68640-2.1002023.3403021.73250HepG2ZC3H8
NR4A1ENSG00000123358.15269.50780402.81910-0.579802.380501.86220HepG2ZNF622
NR4A1ENSG00000123358.15255.57490144.071700.826903.923902.35360HepG2ZRANB2
NR4A1ENSG00000123358.15281.30890126.812201.149408.990008.04250K562AGGF1
NR4A1ENSG00000123358.15209.22720139.360400.586102.799901.80930K562AKAP8
NR4A1ENSG00000123358.15324.52220131.957101.2981012.6035011.06690K562AKAP8L
NR4A1ENSG00000123358.15269.93310130.588001.047505.851005.05210K562AQR
NR4A1ENSG00000123358.15106.8725060.918800.810802.618101.68720K562BCLAF1
NR4A1ENSG00000123358.15142.0825071.625900.988104.501003.09020K562CCAR1
NR4A1ENSG00000123358.1580.3928039.601701.021402.900701.58590K562CIRBP
NR4A1ENSG00000123358.15222.32400119.268800.898304.512302.59180K562CKAP4
NR4A1ENSG00000123358.15173.0639074.941301.207402.747601.96840K562CPSF6
NR4A1ENSG00000123358.1585.4024046.216000.885802.286701.34380K562CSTF2
NR4A1ENSG00000123358.15176.41030112.893800.643902.847401.61810K562DDX21
NR4A1ENSG00000123358.15103.6405043.614301.248603.838401.83940K562DDX51
NR4A1ENSG00000123358.15165.5425080.198301.045503.982402.33810K562DHX30
NR4A1ENSG00000123358.15207.78850141.975400.549402.790101.91210K562DKC1
NR4A1ENSG00000123358.15167.5865077.016701.121605.926603.97400K562DNAJC21
NR4A1ENSG00000123358.15214.1847040.323902.4090019.3943016.70010K562EFTUD2
NR4A1ENSG00000123358.15155.2982072.850501.091903.841702.63320K562EIF3A
NR4A1ENSG00000123358.15215.07330132.030900.703903.616302.14230K562EXOSC5
NR4A1ENSG00000123358.15182.6227076.256601.259806.771005.41180K562FMR1
NR4A1ENSG00000123358.15137.0898064.636701.084604.542203.34410K562FTO
NR4A1ENSG00000123358.156.1044026.41190-2.113302.878702.15490K562G3BP2
NR4A1ENSG00000123358.1591.2676040.431401.174503.213401.66180K562GEMIN5
NR4A1ENSG00000123358.15178.8138090.978200.974804.438802.99760K562GLRX3
NR4A1ENSG00000123358.15147.9574071.548301.048104.509903.49950K562GPKOW
NR4A1ENSG00000123358.15204.18520116.015300.815502.097401.43330K562GRSF1
NR4A1ENSG00000123358.15214.60490111.837600.940203.146301.82090K562HNRNPA2B1
NR4A1ENSG00000123358.15123.8290066.808800.890103.024402.40330K562HNRNPC
NR4A1ENSG00000123358.15114.5136059.659700.940603.187101.95700K562HNRNPF
NR4A1ENSG00000123358.15111.8763036.983401.596906.493504.63820K562IGF2BP2
NR4A1ENSG00000123358.15209.32860140.028300.580002.556001.76760K562KIF1C
NR4A1ENSG00000123358.15114.3668061.099300.904302.505001.61970K562KRR1
NR4A1ENSG00000123358.1577.9225038.834101.004602.967702.09670K562MAGOH
NR4A1ENSG00000123358.15213.85820134.050600.673803.305702.09960K562MAK16
NR4A1ENSG00000123358.1590.0163038.750101.215903.325702.30300K562MATR3
NR4A1ENSG00000123358.15284.76180156.868600.860106.188204.72450K562MBNL1
NR4A1ENSG00000123358.15182.2954069.840001.384108.092506.54970K562METAP2
NR4A1ENSG00000123358.15158.5247095.647100.728803.069702.22060K562MTPAP
NR4A1ENSG00000123358.15247.08110106.298901.216805.441404.44740K562NSUN2
NR4A1ENSG00000123358.15216.2259097.810501.144404.151902.87460K562PABPN1
NR4A1ENSG00000123358.15102.4972034.546501.568906.228604.74590K562PCBP2
NR4A1ENSG00000123358.15238.16310116.270201.034403.531601.81870K562PPP1R8
NR4A1ENSG00000123358.15103.8911039.240801.404504.444403.49460K562PRPF8
NR4A1ENSG00000123358.15146.6664059.900901.291806.368604.90840K562PSIP1
NR4A1ENSG00000123358.15233.88840133.364000.810404.156702.97210K562PUM2
NR4A1ENSG00000123358.15222.22380130.842500.764103.523902.92270K562PUS1
NR4A1ENSG00000123358.15236.20060127.505100.889403.792303.11420K562RBM15
NR4A1ENSG00000123358.15187.9845036.162102.378007.373005.91460K562RBM22
NR4A1ENSG00000123358.15277.21310120.331301.203904.601502.48940K562RBM39
NR4A1ENSG00000123358.1597.8641054.650900.840402.511701.57090K562RCC2
NR4A1ENSG00000123358.15145.9124039.943101.869008.696907.23400K562RPS19
NR4A1ENSG00000123358.15216.1866097.077501.155003.932802.03300K562SBDS
NR4A1ENSG00000123358.15226.9696033.554402.7578011.750308.93270K562SERBP1
NR4A1ENSG00000123358.15330.1306089.441101.883909.699507.04730K562SF1
NR4A1ENSG00000123358.15203.31480104.850600.955302.552601.76770K562SF3A3
NR4A1ENSG00000123358.15287.5205068.053202.0788018.5139015.97450K562SF3B1
NR4A1ENSG00000123358.15403.32170109.025301.8872012.219508.91470K562SFPQ
NR4A1ENSG00000123358.15160.2597078.864901.022905.070903.32510K562SLBP
NR4A1ENSG00000123358.15315.39800102.731701.618206.926504.67510K562SNRNP200
NR4A1ENSG00000123358.15122.0365051.807701.236002.652601.65500K562SRFBP1
NR4A1ENSG00000123358.15238.66580107.418101.151703.519002.47890K562SRPK2
NR4A1ENSG00000123358.15138.9179036.994001.9088010.864809.47220K562SRSF1
NR4A1ENSG00000123358.15162.75890100.719600.692303.355602.05950K562SRSF7
NR4A1ENSG00000123358.1586.1784037.943501.183402.515701.55210K562SUPV3L1
NR4A1ENSG00000123358.1564.59500129.21110-1.000204.152403.14070K562SYNCRIP
NR4A1ENSG00000123358.1586.8784037.432101.214602.507001.83070K562TARDBP
NR4A1ENSG00000123358.1575.2310036.109701.058802.817801.99170K562TIA1
NR4A1ENSG00000123358.1579.5241035.453801.165403.289402.08040K562TRA2A
NR4A1ENSG00000123358.15155.5089061.207201.345107.095305.42430K562TRIM56
NR4A1ENSG00000123358.1585.7639025.607101.743706.367804.55760K562U2AF1
NR4A1ENSG00000123358.1563.0063026.444801.252403.406402.51720K562U2AF2
NR4A1ENSG00000123358.15119.3999040.183601.571006.371604.75080K562UCHL5
NR4A1ENSG00000123358.15336.47170132.683601.342402.862001.54170K562UTP18
NR4A1ENSG00000123358.1597.6777040.957701.253802.541801.39780K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NR4A1 is not available on ENCORE database.





1 RBPs can affect the splicing of NR4A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENR4A1ENSG00000123358.15chr12+5244627952446429524451905244535252448110524484570.339000.000160.03435includedHepG2RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NR4A1 is not avaliable on ENCORE database.