GPSM3

General Information

Gene Name       : GPSM3
Gene ID             : ENSG00000213654.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GPSM3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPSM3ENSG00000213654.938.0170.7754.39ENCSR000AEF
HepG2GPSM3ENSG00000213654.91.300.761.03ENCSR985KAT
K562GPSM3ENSG00000213654.933.5726.6630.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPSM3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPSM3 RNA is bound by 3 proteins.  







eCLIP assay for GPSM3 is not avaliable on ENCORE database.





3 proteins are bound to GPSM3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63215880632158849-3'-UTR,intron-Distal3.548233.06830K562UPF1
chr63215951732159559-3'-UTR,CDS,intron-Distal4.413853.31330K562UPF1
chr63216025732160345-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.172803.06617K562HNRNPK
chr63216051132160534-5'-UTR,intron-Distal4.010183.31330K562UPF1
chr63215990132159926-CDS,intron-Distal,intron-Proximal5.278566.04760K562AQR
chr63215988032159901-intron-Distal,intron-Proximal5.082405.65342K562AQR
chr63215973632159841-intron-Distal,intron-Proximal4.857777.37220K562HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPSM3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPSM3 is not available on ENCORE database.

  • 137 RBPs can affect the levels of GPSM3.  








The Knockdown/knockout RNA-Seq assay for GPSM3 is not available on ENCORE database.





137 RBPs can affect the gene expression of GPSM3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPSM3ENSG00000213654.576.1172033.375701.189303.196602.05240HepG2AATF
GPSM3ENSG00000213654.511.9812073.38760-2.614806.291804.93560HepG2ABCF1
GPSM3ENSG00000213654.5219.4954084.338501.379807.440206.61250HepG2AKAP1
GPSM3ENSG00000213654.5434.9511092.620102.2314029.0397026.12940HepG2AKAP8
GPSM3ENSG00000213654.5290.4946069.779502.0575019.7529017.89440HepG2ASCC1
GPSM3ENSG00000213654.5239.9353067.414601.8314019.1378017.63440HepG2AUH
GPSM3ENSG00000213654.511.8413066.29650-2.485107.252906.04580HepG2CIRBP
GPSM3ENSG00000213654.5544.9299082.016502.7320033.1900030.67060HepG2CNOT7
GPSM3ENSG00000213654.581.3227042.686500.929802.364601.72200HepG2CPSF6
GPSM3ENSG00000213654.5143.9706060.374801.253705.280903.79310HepG2CPSF7
GPSM3ENSG00000213654.5166.9286059.699901.4833010.369909.27930HepG2CELF1
GPSM3ENSG00000213654.518.5914040.28010-1.115402.160901.41680HepG2DDX19B
GPSM3ENSG00000213654.59.7661036.82400-1.914803.490802.73690HepG2DDX21
GPSM3ENSG00000213654.513.2879036.03470-1.439302.281901.46180HepG2DDX24
GPSM3ENSG00000213654.5175.4593080.782401.118905.194204.36050HepG2DDX3X
GPSM3ENSG00000213654.589.5934030.312101.563404.231603.29630HepG2DDX55
GPSM3ENSG00000213654.5672.7841069.411403.2768060.4660058.18280HepG2DDX6
GPSM3ENSG00000213654.510.9949041.67040-1.922203.892403.11570HepG2DKC1
GPSM3ENSG00000213654.5193.2374041.244402.2280017.3645015.74990HepG2DNAJC21
GPSM3ENSG00000213654.521.0052058.40020-1.475203.326202.32280HepG2EEF2
GPSM3ENSG00000213654.512.8971034.77410-1.431002.311901.32260HepG2EIF3G
GPSM3ENSG00000213654.510.1965073.71310-2.8538010.055908.85460HepG2EIF4A3
GPSM3ENSG00000213654.528.5261063.53290-1.155202.917801.79660HepG2ESF1
GPSM3ENSG00000213654.5131.3884077.379500.763703.040802.41490HepG2ETF1
GPSM3ENSG00000213654.598.3755035.091801.487105.734704.18300HepG2FASTKD2
GPSM3ENSG00000213654.5376.8533074.091102.3465022.3391020.52960HepG2FIP1L1
GPSM3ENSG00000213654.593.2886042.752101.125602.291201.37420HepG2FTO
GPSM3ENSG00000213654.5508.0723069.002602.8802047.0588044.49530HepG2G3BP1
GPSM3ENSG00000213654.513.1853073.27280-2.474308.163906.61790HepG2G3BP2
GPSM3ENSG00000213654.5131.3436041.579101.6593010.306408.58520HepG2HDGF
GPSM3ENSG00000213654.57.4090041.63960-2.490604.754503.93800HepG2HNRNPA1
GPSM3ENSG00000213654.5149.6801069.903001.098404.538703.66330HepG2HNRNPK
GPSM3ENSG00000213654.5197.8204058.452101.7588016.1293014.61920HepG2HNRNPL
GPSM3ENSG00000213654.5173.8733046.011901.9179015.3338014.00210HepG2HNRNPU
GPSM3ENSG00000213654.537.6697070.13480-0.896701.940501.36570HepG2IGF2BP2
GPSM3ENSG00000213654.5190.3530079.960101.251206.260304.20500HepG2ILF3
GPSM3ENSG00000213654.540.3387098.19320-1.283504.011703.00820HepG2LARP4
GPSM3ENSG00000213654.511.0550074.42530-2.751109.507308.30880HepG2MAGOH
GPSM3ENSG00000213654.519.9327074.83760-1.908605.558204.68920HepG2MATR3
GPSM3ENSG00000213654.5157.6381049.594301.668305.981004.48190HepG2METAP2
GPSM3ENSG00000213654.5106.6075050.318801.083003.753002.33850HepG2NAA15
GPSM3ENSG00000213654.5238.5897063.635801.9065019.8177017.89570HepG2NOL12
GPSM3ENSG00000213654.5119.1428045.541401.387306.628605.40260HepG2PARN
GPSM3ENSG00000213654.517.0862056.72470-1.731104.690803.93520HepG2PCBP1
GPSM3ENSG00000213654.5102.5016057.716900.828502.588202.05610HepG2PTBP1
GPSM3ENSG00000213654.5149.1708064.495701.209607.440006.56460HepG2PUM1
GPSM3ENSG00000213654.5123.5852064.444900.939303.749202.97410HepG2PUM2
GPSM3ENSG00000213654.520.1660044.36500-1.137502.247601.67960HepG2PUS1
GPSM3ENSG00000213654.5290.0900062.514402.2141024.3443022.75260HepG2QKI
GPSM3ENSG00000213654.5156.5970038.601502.020209.190607.95590HepG2RAVER1
GPSM3ENSG00000213654.5213.6285066.156601.6910013.4618011.78550HepG2RBM15
GPSM3ENSG00000213654.5269.3246064.679502.0579020.6045019.45840HepG2RBM22
GPSM3ENSG00000213654.522.1920052.60560-1.245202.267301.30950HepG2RCC2
GPSM3ENSG00000213654.515.0271037.93460-1.335902.174701.33480HepG2RPS10
GPSM3ENSG00000213654.538.9865082.37410-1.079202.951302.12700HepG2RPS3A
GPSM3ENSG00000213654.516.4265055.60020-1.759104.347203.49230HepG2SF3A3
GPSM3ENSG00000213654.515.7312045.72160-1.539202.772102.06460HepG2SF3B1
GPSM3ENSG00000213654.591.9567011.330603.020607.250004.71690HepG2SFPQ
GPSM3ENSG00000213654.585.9543047.781200.847002.485401.87080HepG2SMN1
GPSM3ENSG00000213654.5116.2334039.406401.560405.053903.72960HepG2SMNDC1
GPSM3ENSG00000213654.577.5571010.440602.893007.105304.80410HepG2SNRNP200
GPSM3ENSG00000213654.5120.4519050.871201.243403.403302.53210HepG2SNRNP70
GPSM3ENSG00000213654.516.1315062.72470-1.959205.377004.77260HepG2SRSF1
GPSM3ENSG00000213654.5174.3343049.180001.8256010.061308.05190HepG2SRSF3
GPSM3ENSG00000213654.5100.1769058.916200.765702.443401.78630HepG2SRSF7
GPSM3ENSG00000213654.5107.2616051.028301.071704.292603.63360HepG2SRSF9
GPSM3ENSG00000213654.53.7728063.44810-4.071906.866806.12810HepG2SSB
GPSM3ENSG00000213654.5170.29430100.482600.761003.058901.71010HepG2SSRP1
GPSM3ENSG00000213654.5130.5223068.218800.936001.961901.42150HepG2SUCLG1
GPSM3ENSG00000213654.533.4627098.69560-1.560404.717003.35490HepG2TBRG4
GPSM3ENSG00000213654.593.2135051.805800.847302.577701.76840HepG2TIA1
GPSM3ENSG00000213654.513.1031044.70180-1.770403.832503.26480HepG2TIAL1
GPSM3ENSG00000213654.580.2435045.109300.830902.415901.88170HepG2TRIM56
GPSM3ENSG00000213654.5111.4493059.360700.908703.187102.24350HepG2TUFM
GPSM3ENSG00000213654.5134.0247063.348201.081003.644602.92820HepG2U2AF1
GPSM3ENSG00000213654.566.2695012.091902.454204.433903.17440HepG2U2AF2
GPSM3ENSG00000213654.5125.2901062.838600.995403.022502.14870HepG2UBE2L3
GPSM3ENSG00000213654.550.9529017.823301.515303.495802.64680HepG2UCHL5
GPSM3ENSG00000213654.5164.7867049.308701.7406012.8182011.51840HepG2UPF1
GPSM3ENSG00000213654.5118.1567050.683401.221005.437804.01290HepG2UTP18
GPSM3ENSG00000213654.59.1596029.70260-1.697202.240101.58220HepG2XRN2
GPSM3ENSG00000213654.518.6564044.72230-1.261302.479201.83800HepG2ZC3H8
GPSM3ENSG00000213654.586.7458054.230300.677601.877201.40280HepG2ZNF622
GPSM3ENSG00000213654.5210.31680441.81010-1.0709010.332208.06890K562AARS
GPSM3ENSG00000213654.5399.96560891.87650-1.1570024.5981023.01950K562AGGF1
GPSM3ENSG00000213654.5608.00690928.02870-0.610106.357805.33830K562AKAP8L
GPSM3ENSG00000213654.5171.91160703.45720-2.0328034.8307032.95510K562AQR
GPSM3ENSG00000213654.5647.70810973.70790-0.588107.846406.18680K562ATP5C1
GPSM3ENSG00000213654.51143.92500833.020700.457504.411301.92320K562AUH
GPSM3ENSG00000213654.5308.14950413.35000-0.423702.807201.48640K562BCCIP
GPSM3ENSG00000213654.5279.45830399.48520-0.515503.859602.71390K562BCLAF1
GPSM3ENSG00000213654.5231.99660515.52050-1.1519011.9079010.05980K562BOP1
GPSM3ENSG00000213654.5529.81090742.85840-0.487602.882101.40910K562CKAP4
GPSM3ENSG00000213654.5696.18750890.48930-0.355103.592002.32400K562CPEB4
GPSM3ENSG00000213654.5658.719101115.04050-0.7594011.686309.75950K562CELF1
GPSM3ENSG00000213654.5433.57750569.45910-0.393302.924101.67770K562DDX21
GPSM3ENSG00000213654.5158.06260350.21140-1.1477013.4279010.75310K562DDX27
GPSM3ENSG00000213654.5409.30630921.34710-1.1706026.8986025.06820K562DDX47
GPSM3ENSG00000213654.5672.14880998.68360-0.571207.857206.24640K562DKC1
GPSM3ENSG00000213654.5182.88620385.98550-1.077605.693103.82950K562EEF2
GPSM3ENSG00000213654.51343.21180496.609801.4354037.9416035.89290K562EIF2S2
GPSM3ENSG00000213654.5232.52960568.91390-1.290802.474001.52650K562EIF3A
GPSM3ENSG00000213654.5208.41230399.05260-0.937105.363503.86260K562EIF3D
GPSM3ENSG00000213654.5216.73210356.32190-0.717305.140204.01950K562EIF4A3
GPSM3ENSG00000213654.5510.34760906.71490-0.8292014.1432012.12390K562EIF4G2
GPSM3ENSG00000213654.5522.84110402.396500.377702.160701.40920K562FIP1L1
GPSM3ENSG00000213654.5193.27870419.66800-1.118609.914407.60490K562FKBP4
GPSM3ENSG00000213654.5241.15960370.55820-0.619704.638203.88200K562FXR1
GPSM3ENSG00000213654.5110.6534038.525001.522104.482501.75080K562FXR2
GPSM3ENSG00000213654.559.09820210.76990-1.8345012.6871010.94040K562G3BP2
GPSM3ENSG00000213654.5442.42800765.48270-0.7909011.360609.20610K562GLRX3
GPSM3ENSG00000213654.5192.37760644.86160-1.7450029.4461026.63870K562HNRNPA1
GPSM3ENSG00000213654.5365.46110483.48220-0.403702.289501.73910K562HNRNPC
GPSM3ENSG00000213654.51278.66830545.545501.2288022.4631020.38740K562HSPD1
GPSM3ENSG00000213654.5371.53120661.54570-0.832404.729402.83380K562ILF2
GPSM3ENSG00000213654.5629.59120984.90300-0.645606.732705.31540K562KIF1C
GPSM3ENSG00000213654.5164.45720446.86010-1.4421012.8012010.66860K562KRR1
GPSM3ENSG00000213654.5794.50290468.120500.763108.783706.23010K562LARP7
GPSM3ENSG00000213654.5640.99590431.059700.572305.027902.88750K562LSM11
GPSM3ENSG00000213654.5231.52310453.49220-0.969903.486402.53760K562MAGOH
GPSM3ENSG00000213654.5223.20670452.49840-1.019503.720802.63860K562MATR3
GPSM3ENSG00000213654.5381.71040804.79370-1.0761021.8400019.88010K562MTPAP
GPSM3ENSG00000213654.5690.25220991.85690-0.523004.820502.81710K562NOL12
GPSM3ENSG00000213654.5587.86630894.26290-0.6052010.276208.96090K562NSUN2
GPSM3ENSG00000213654.5663.56460475.998400.479202.801601.37300K562NUSAP1
GPSM3ENSG00000213654.5400.43180695.94230-0.797405.209103.49280K562PABPC1
GPSM3ENSG00000213654.5245.26740443.51610-0.854602.793201.43740K562PCBP1
GPSM3ENSG00000213654.5272.55670750.91100-1.462107.962006.55190K562PCBP3
GPSM3ENSG00000213654.5556.47550931.68690-0.7435010.489908.09440K562PNPT1
GPSM3ENSG00000213654.5211.99040575.93280-1.4419012.8636011.20020K562POLR2G
GPSM3ENSG00000213654.5634.03460456.818900.472803.301102.39110K562PPIG
GPSM3ENSG00000213654.5784.11900433.485900.855009.187207.33860K562PSIP1
GPSM3ENSG00000213654.5658.23440989.27250-0.587806.354305.11890K562PUF60
GPSM3ENSG00000213654.5711.821001052.40170-0.564107.127205.35610K562PUM1
GPSM3ENSG00000213654.5573.76590920.41640-0.681803.401102.80780K562PUS1
GPSM3ENSG00000213654.5535.49070896.75190-0.7438010.558209.42450K562RBM15
GPSM3ENSG00000213654.5150.86720253.38610-0.748103.187301.48550K562RPS10
GPSM3ENSG00000213654.5153.41100369.46860-1.268006.874405.57500K562RPS19
GPSM3ENSG00000213654.5433.18420646.31780-0.577302.970501.32040K562RPS3A
GPSM3ENSG00000213654.5348.27780207.387700.747804.014302.77840K562RPS3
GPSM3ENSG00000213654.5186.01320370.85430-0.995405.568403.68220K562RRP9
GPSM3ENSG00000213654.5478.10040828.09780-0.792506.971104.16880K562SAFB2
GPSM3ENSG00000213654.5105.92400310.37900-1.551006.296104.05060K562SERBP1
GPSM3ENSG00000213654.5633.39280882.31280-0.478205.467304.34840K562SF3A3
GPSM3ENSG00000213654.5233.55560497.69650-1.091509.037607.20680K562SF3B1
GPSM3ENSG00000213654.5100.08340219.18850-1.131008.317006.79320K562SF3B4
GPSM3ENSG00000213654.5560.00140374.896600.578804.350202.97970K562SRFBP1
GPSM3ENSG00000213654.5631.99620903.93980-0.516304.790503.60050K562SRPK2
GPSM3ENSG00000213654.5335.53980527.95010-0.653904.907703.05720K562SSRP1
GPSM3ENSG00000213654.5272.68700482.86600-0.824406.576904.57540K562STAU1
GPSM3ENSG00000213654.5648.39080863.13900-0.412703.961402.17740K562SUCLG1
GPSM3ENSG00000213654.5294.96790805.97680-1.450209.452406.24720K562SUPT6H
GPSM3ENSG00000213654.5229.03550351.09570-0.616302.700001.69550K562SUPV3L1
GPSM3ENSG00000213654.5368.60130577.73300-0.648304.189303.17450K562SYNCRIP
GPSM3ENSG00000213654.5663.70160836.03660-0.333002.906301.60530K562TROVE2
GPSM3ENSG00000213654.5111.96040204.33250-0.867904.128602.73350K562U2AF1
GPSM3ENSG00000213654.560.98750211.02190-1.7908015.4391013.51470K562U2AF2
GPSM3ENSG00000213654.5615.36830933.13890-0.600602.787101.48600K562UTP18
GPSM3ENSG00000213654.5283.76670835.30130-1.5576012.6412010.34330K562UTP3
GPSM3ENSG00000213654.5459.26560811.35380-0.8210011.029909.22520K562WDR3
GPSM3ENSG00000213654.5414.54250843.65630-1.0251015.0488013.28380K562WDR43
GPSM3ENSG00000213654.5594.80530833.35850-0.486504.490402.83480K562WRN
GPSM3ENSG00000213654.5561.48200792.52130-0.497204.344803.22440K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPSM3 is not available on ENCORE database.





1 RBPs can affect the splicing of GPSM3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSGPSM3ENSG00000213654.5chr6-321594853215968532159485321596473215992432160027-0.080000.000160.07591shorterK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GPSM3 is not avaliable on ENCORE database.