FAM171A1

General Information

Gene Name       : FAM171A1
Gene ID             : ENSG00000148468.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM171A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM171A1ENSG00000148468.160.070.070.07ENCSR000AEF
HepG2FAM171A1ENSG00000148468.1635.1628.3531.75ENCSR985KAT
K562FAM171A1ENSG00000148468.165.004.924.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM171A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM171A1 RNA is bound by 26 proteins.  







eCLIP assay for FAM171A1 is not avaliable on ENCORE database.





26 proteins are bound to FAM171A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr101525430215254407-3'-UTR,intron-Distal3.856308.86627HepG2DDX55
chr101525433315254414-3'-UTR,intron-Distal4.138198.20344HepG2TIA1
chr101525427915254340-3'-UTR,intron-Distal4.295034.78280HepG2AKAP1
chr101525425115254329-3'-UTR,intron-Distal3.795943.84732HepG2TIA1
chr101525487815254915-3'-UTR,intron-Distal3.810053.68471HepG2BCLAF1
chr101525487315254995-3'-UTR,CDS,intron-Distal3.638555.73981HepG2GRWD1
chr101525427615254334-3'-UTR,intron-Distal3.016084.01705HepG2FUBP3
chr101525426715254410-3'-UTR,intron-Distal3.147105.23265HepG2TIAL1
chr101525380915253894-3'-UTR,intron-Distal5.520475.98124HepG2DDX55
chr101541295015413050-CDS,intron-Distal4.6242730.93033HepG2DDX3X
chr101525657115256583-CDS,intron-Distal3.853644.91603HepG2LIN28B
chr101525658315256601-CDS,intron-Distal4.859946.07680HepG2LIN28B
chr101525566115255721-CDS,intron-Distal4.186576.75303HepG2IGF2BP1
chr101525560915255661-CDS,intron-Distal3.108986.67603HepG2IGF2BP1
chr101525799415258022-CDS,intron-Distal,intron-Proximal4.616775.48503HepG2LIN28B
chr101531251515312597-intron-Distal4.214504.61447HepG2SUGP2
chr101538757815387661-intron-Distal3.920766.52594HepG2HNRNPK
chr101538739015387441-intron-Distal3.422023.91859HepG2SUGP2
chr101539966715399779-intron-Distal3.650353.81193HepG2QKI
chr101541287415412933-intron-Distal3.561933.57490HepG2NKRF
chr101538770115387778-intron-Distal3.142055.35016HepG2SUGP2
chr101528473815284795-intron-Distal3.215824.07077HepG2HNRNPC
chr101541283015412893-intron-Distal3.009483.14777HepG2GTF2F1
chr101539797215398033-intron-Distal3.685053.04224HepG2SUGP2
chr101540594715406042-intron-Distal4.102763.65412HepG2HNRNPK
chr101541239315412506-intron-Distal4.6372110.78851HepG2NKRF
chr101541282615412937-intron-Distal3.880583.39593HepG2PRPF4
chr101537368515373830-intron-Distal4.5043416.75136HepG2HNRNPL
chr101540794015407990-intron-Distal4.253575.42334HepG2QKI
chr101541287115412928-intron-Distal3.796194.88931HepG2FAM120A
chr101526615215266222-intron-Distal4.108513.57018HepG2HNRNPK
chr101539502815395090-intron-Distal4.684903.97018HepG2HNRNPM
chr101540788715407940-intron-Distal3.610075.31346HepG2QKI
chr101538802815388084-intron-Distal3.379304.57452HepG2SUGP2
chr101531388215313986-intron-Distal3.402833.10883HepG2SUGP2
chr101526623415266383-intron-Distal4.473554.12666HepG2HNRNPK
chr101529695015297024-intron-Distal,intron-Proximal5.421488.32568HepG2RBFOX2
chr101541281715412917-intron-Distal3.7181111.17980HepG2CSTF2T
chr101540214315402190-intron-Distal7.0050922.57343HepG2XPO5
chr101537370415373804-intron-Distal3.444824.35137HepG2AGGF1
chr101541282115412871-intron-Distal3.743295.16644HepG2FAM120A
chr101531302415313125-intron-Distal3.653055.30446HepG2SUGP2
chr101539664115396696-intron-Distal3.692434.61500HepG2HNRNPM
chr101541241915412484-intron-Distal3.518976.72825HepG2XRN2
chr101539608415396138-intron-Distal3.588733.69184HepG2SUGP2
chr101538287415382945-intron-Distal3.966613.57018HepG2HNRNPK
chr101528914515289260-intron-Distal4.606676.34129HepG2HNRNPL
chr101540219015402249-intron-Distal3.296167.67623HepG2XPO5
chr101538515515385181-intron-Distal3.233483.23296HepG2SUGP2
chr101538758315387643-intron-Distal3.514954.14346HepG2SUGP2
chr101541282315412874-intron-Distal4.713216.03393HepG2NKRF
chr101527387315273923-intron-Distal3.372843.76025HepG2ILF3
chr101539779315397858-intron-Distal4.164733.04224HepG2SUGP2
chr101531388715313937-intron-Distal3.358863.39857HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM171A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM171A1 is not available on ENCORE database.

  • 119 RBPs can affect the levels of FAM171A1.  








The Knockdown/knockout RNA-Seq assay for FAM171A1 is not available on ENCORE database.





119 RBPs can affect the gene expression of FAM171A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM171A1ENSG00000148468.12921.311402078.58370-1.1738019.6079017.51860HepG2ABCF1
FAM171A1ENSG00000148468.121245.190401587.32100-0.350205.251704.46680HepG2ACO1
FAM171A1ENSG00000148468.121078.962002526.61270-1.2276020.2513018.94970HepG2AKAP1
FAM171A1ENSG00000148468.121870.563602512.07410-0.425402.430701.45100HepG2AKAP8
FAM171A1ENSG00000148468.121579.916402090.47620-0.404003.295202.43780HepG2ASCC1
FAM171A1ENSG00000148468.122245.360902819.00640-0.328205.264804.36770HepG2AUH
FAM171A1ENSG00000148468.12607.810601036.54930-0.770107.483506.08980HepG2BCLAF1
FAM171A1ENSG00000148468.12360.120301111.74440-1.6263014.3287013.11590HepG2BOP1
FAM171A1ENSG00000148468.12948.969501318.43030-0.474405.434204.40060HepG2CALR
FAM171A1ENSG00000148468.121531.799602042.26250-0.414902.614901.67070HepG2CCAR1
FAM171A1ENSG00000148468.12700.451001986.12340-1.5036033.9942031.76950HepG2CIRBP
FAM171A1ENSG00000148468.121333.541802738.96400-1.0384010.219108.77940HepG2CNOT7
FAM171A1ENSG00000148468.121572.846701020.595600.623907.081006.02090HepG2CPSF6
FAM171A1ENSG00000148468.121344.395401711.59240-0.348403.273602.07040HepG2CPSF7
FAM171A1ENSG00000148468.12941.894901258.58910-0.418204.983303.61770HepG2YBX3
FAM171A1ENSG00000148468.121033.238201411.79360-0.450402.703701.36930HepG2CSTF2T
FAM171A1ENSG00000148468.122377.235301962.169600.276703.579202.86720HepG2CELF1
FAM171A1ENSG00000148468.121640.405102109.65700-0.363006.870505.78020HepG2DAZAP1
FAM171A1ENSG00000148468.121234.827901468.05990-0.249602.969302.10720HepG2DDX19B
FAM171A1ENSG00000148468.12561.998901520.39050-1.4358034.6454032.64950HepG2DDX21
FAM171A1ENSG00000148468.12856.711701488.33720-0.7968013.5620011.61510HepG2DDX24
FAM171A1ENSG00000148468.12742.752201097.45970-0.563204.525702.93540HepG2DDX27
FAM171A1ENSG00000148468.121336.031002420.12430-0.8571012.2113010.98460HepG2DDX3X
FAM171A1ENSG00000148468.12727.618601173.12670-0.689106.461905.33890HepG2DDX55
FAM171A1ENSG00000148468.121242.970701712.94400-0.462704.354603.09640HepG2DDX5
FAM171A1ENSG00000148468.12948.021301191.97540-0.330402.491601.56020HepG2DHX30
FAM171A1ENSG00000148468.12605.449301518.64470-1.3267045.8483043.96300HepG2DKC1
FAM171A1ENSG00000148468.121522.578501224.921100.313704.633603.82550HepG2DNAJC2
FAM171A1ENSG00000148468.121077.124701576.82230-0.549805.496904.23450HepG2EEF2
FAM171A1ENSG00000148468.12922.601601998.51920-1.1152018.9097017.45800HepG2EIF2S1
FAM171A1ENSG00000148468.12827.018301436.10890-0.7962013.6405011.61180HepG2EIF3G
FAM171A1ENSG00000148468.121005.757702208.39570-1.1347017.7070016.10040HepG2EIF4A3
FAM171A1ENSG00000148468.123337.831602150.570600.634105.265804.33730HepG2EIF4B
FAM171A1ENSG00000148468.121728.279402081.44140-0.268203.124802.24500HepG2EIF4G1
FAM171A1ENSG00000148468.121175.710401800.47230-0.614807.695805.99880HepG2ESF1
FAM171A1ENSG00000148468.121319.014203236.60600-1.2950064.6197062.44410HepG2ETF1
FAM171A1ENSG00000148468.121059.896201551.12590-0.549407.014705.69010HepG2EWSR1
FAM171A1ENSG00000148468.12648.537201022.44120-0.656802.439901.49180HepG2FTO
FAM171A1ENSG00000148468.12611.439201139.61130-0.8983012.7654010.94610HepG2GEMIN5
FAM171A1ENSG00000148468.12724.904001156.79780-0.674304.265703.48270HepG2GPKOW
FAM171A1ENSG00000148468.121087.429201604.11200-0.560902.898301.48610HepG2HLTF
FAM171A1ENSG00000148468.12576.553301247.69320-1.1137019.8040018.33630HepG2HNRNPA1
FAM171A1ENSG00000148468.123186.409102261.890100.494303.782102.13430HepG2HNRNPAB
FAM171A1ENSG00000148468.12798.344201387.82160-0.7977011.4066010.07870HepG2HNRNPC
FAM171A1ENSG00000148468.122208.137301590.365500.473408.866707.67600HepG2HNRNPF
FAM171A1ENSG00000148468.121683.738202093.99100-0.314602.466301.80480HepG2HNRNPK
FAM171A1ENSG00000148468.122850.131001921.688400.5686019.1977017.57160HepG2HNRNPL
FAM171A1ENSG00000148468.12538.858801103.96490-1.034708.234907.21110HepG2HNRNPLL
FAM171A1ENSG00000148468.12846.015601448.00840-0.7753012.6915010.90610HepG2HNRNPM
FAM171A1ENSG00000148468.121604.674401378.646600.218902.240201.68930HepG2HNRNPU
FAM171A1ENSG00000148468.12963.664702101.15800-1.1246019.9987018.37340HepG2IGF2BP2
FAM171A1ENSG00000148468.123571.351602157.091800.727307.503406.12430HepG2LARP4
FAM171A1ENSG00000148468.12831.134901480.87530-0.8333013.5463011.22240HepG2LARP7
FAM171A1ENSG00000148468.121056.594302229.57380-1.0773018.1887016.58390HepG2MAGOH
FAM171A1ENSG00000148468.121286.693202241.95250-0.801109.599408.48330HepG2MATR3
FAM171A1ENSG00000148468.121096.240201698.50470-0.631709.246107.84870HepG2MSI2
FAM171A1ENSG00000148468.12630.174501126.17800-0.837603.487702.39250HepG2MTPAP
FAM171A1ENSG00000148468.121805.519502294.68190-0.345902.458501.86010HepG2NCBP2
FAM171A1ENSG00000148468.121719.321202591.40320-0.591904.100302.36740HepG2NKRF
FAM171A1ENSG00000148468.121663.189802091.94000-0.330903.664702.78620HepG2NOL12
FAM171A1ENSG00000148468.12639.69340978.96810-0.613903.743202.87420HepG2NSUN2
FAM171A1ENSG00000148468.12850.682502503.49070-1.5572018.5958016.27940HepG2PABPC1
FAM171A1ENSG00000148468.12952.003102043.19070-1.1018018.4459016.63370HepG2PABPC4
FAM171A1ENSG00000148468.121979.340601364.632200.5364010.913709.41680HepG2PARN
FAM171A1ENSG00000148468.122555.222302060.898200.310104.676603.92180HepG2PCBP1
FAM171A1ENSG00000148468.121089.682801582.96370-0.538703.335802.19960HepG2PCBP2
FAM171A1ENSG00000148468.121271.684901853.86390-0.5438010.530709.16290HepG2PRPF4
FAM171A1ENSG00000148468.12956.513301663.98880-0.798806.413004.63130HepG2PRPF6
FAM171A1ENSG00000148468.121077.408501996.98320-0.8903016.9046015.60200HepG2PUF60
FAM171A1ENSG00000148468.122432.127502119.936800.198103.008602.39610HepG2PUM1
FAM171A1ENSG00000148468.121750.321802118.35670-0.275302.514201.87460HepG2PUM2
FAM171A1ENSG00000148468.121203.899401616.79430-0.425407.379306.45410HepG2PUS1
FAM171A1ENSG00000148468.121718.437802271.16370-0.402305.536904.69880HepG2QKI
FAM171A1ENSG00000148468.12828.087101527.28390-0.883106.200805.17000HepG2RAVER1
FAM171A1ENSG00000148468.122767.585902061.214300.425005.243104.34220HepG2RBM25
FAM171A1ENSG00000148468.122336.887901785.726500.388003.126302.06850HepG2RBM27
FAM171A1ENSG00000148468.121048.220401450.09170-0.468204.028302.74660HepG2RCC2
FAM171A1ENSG00000148468.121107.260702333.80080-1.0757039.7262038.21030HepG2NELFE
FAM171A1ENSG00000148468.121348.847601713.29930-0.345002.975102.26950HepG2RPLP0
FAM171A1ENSG00000148468.12864.016801245.52910-0.527606.070505.20040HepG2RPS19
FAM171A1ENSG00000148468.121080.733601646.85880-0.607707.228205.97650HepG2RPS2
FAM171A1ENSG00000148468.121359.267702750.57170-1.0169012.3890010.75330HepG2RPS3A
FAM171A1ENSG00000148468.121871.891802590.13570-0.468503.434401.98470HepG2SART3
FAM171A1ENSG00000148468.12534.505801868.23150-1.8054031.8923029.56850HepG2SF3A3
FAM171A1ENSG00000148468.12629.271901092.63400-0.796105.880204.88500HepG2SF3B1
FAM171A1ENSG00000148468.121578.931802183.30220-0.467608.949407.97830HepG2SF3B4
FAM171A1ENSG00000148468.122102.555401487.856900.498803.536101.70970HepG2SND1
FAM171A1ENSG00000148468.121527.558003055.42240-1.0001046.1598044.76550HepG2SRFBP1
FAM171A1ENSG00000148468.12916.243702278.88330-1.3145059.6723058.11950HepG2SRSF1
FAM171A1ENSG00000148468.121058.079001971.79100-0.8981026.9090025.23840HepG2SRSF5
FAM171A1ENSG00000148468.121996.585201562.501400.353605.094504.19530HepG2SRSF7
FAM171A1ENSG00000148468.121529.221501853.98300-0.277803.732703.11300HepG2SRSF9
FAM171A1ENSG00000148468.12611.187002652.82400-2.11780145.71390143.56550HepG2SSB
FAM171A1ENSG00000148468.121326.590302725.34100-1.038708.399806.34210HepG2SSRP1
FAM171A1ENSG00000148468.121016.867401427.36860-0.489202.771601.56700HepG2SUB1
FAM171A1ENSG00000148468.121476.203302242.41740-0.6032016.5232015.20730HepG2SUCLG1
FAM171A1ENSG00000148468.12718.984401417.10090-0.9789019.4115017.18070HepG2SUPT6H
FAM171A1ENSG00000148468.12524.478201167.70990-1.1547012.4756011.21230HepG2SUPV3L1
FAM171A1ENSG00000148468.122349.804102048.317100.198001.861301.38480HepG2TAF15
FAM171A1ENSG00000148468.12492.601301076.36030-1.127707.445006.33220HepG2TARDBP
FAM171A1ENSG00000148468.121413.470602676.86640-0.921305.540704.07680HepG2TBRG4
FAM171A1ENSG00000148468.12663.349701339.63700-1.0140021.9337020.77590HepG2TIAL1
FAM171A1ENSG00000148468.121470.447401951.05110-0.408004.405903.27190HepG2TUFM
FAM171A1ENSG00000148468.121025.209801795.32870-0.8083011.5489010.23860HepG2U2AF1
FAM171A1ENSG00000148468.121231.42430689.720400.836109.645808.23130HepG2UCHL5
FAM171A1ENSG00000148468.12901.595301656.83930-0.8779025.9209024.22920HepG2UPF1
FAM171A1ENSG00000148468.12639.562401068.94930-0.741006.424704.85150HepG2UPF2
FAM171A1ENSG00000148468.121027.928701599.60780-0.6380013.8652012.67980HepG2UTP3
FAM171A1ENSG00000148468.121800.151602463.70700-0.452702.865201.74480HepG2XPO5
FAM171A1ENSG00000148468.121176.854901679.91290-0.513403.251202.09900HepG2XRCC6
FAM171A1ENSG00000148468.12626.167301149.48590-0.876406.981405.84070HepG2XRN2
FAM171A1ENSG00000148468.12350.479701822.20100-2.37830144.65250142.40670HepG2ZNF622
FAM171A1ENSG00000148468.12307.42300214.240500.520902.451801.30500K562ABCF1
FAM171A1ENSG00000148468.12187.91560264.89340-0.495302.216201.68170K562AQR
FAM171A1ENSG00000148468.12257.12610168.676300.608102.616101.68540K562BCLAF1
FAM171A1ENSG00000148468.12311.88930169.739900.877606.238805.06370K562CPSF6
FAM171A1ENSG00000148468.12345.71490226.335000.611004.356503.48120K562EIF2S2
FAM171A1ENSG00000148468.12263.23590178.177000.562902.521101.53970K562EIF3D
FAM171A1ENSG00000148468.12266.52350172.690300.626003.053402.15080K562FMR1
FAM171A1ENSG00000148468.1297.37410146.04630-0.584801.859701.35980K562HNRNPC
FAM171A1ENSG00000148468.12284.53090158.192200.846805.373304.12660K562METAP2
FAM171A1ENSG00000148468.12134.26880298.12690-1.150808.258906.82430K562PCBP3
FAM171A1ENSG00000148468.12111.42340228.67580-1.037306.884405.62840K562POLR2G
FAM171A1ENSG00000148468.12162.35650232.35010-0.517101.982001.50790K562PUS1
FAM171A1ENSG00000148468.12173.22680235.77800-0.444802.137101.41290K562SF3A3
FAM171A1ENSG00000148468.12232.47370154.106800.593002.328101.44450K562SF3B1
FAM171A1ENSG00000148468.12471.96360231.310601.028709.200307.13240K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM171A1 is not available on ENCORE database.





3 RBPs can affect the splicing of FAM171A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEFAM171A1ENSG00000148468.12chr10-15290637152908141529671915296878152629421526305915317853153179460.218000.000010.000961includedHepG2TAF15
MXEFAM171A1ENSG00000148468.12chr10-1529063715290814152967191529687815262942152630591531785315317946-0.247000.000000.000042includedHepG2NOL12
MXEFAM171A1ENSG00000148468.12chr10-1529063715290814152967191529687815262942152630591531785315317946-0.231000.000000.000002includedHepG2HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM171A1 is not avaliable on ENCORE database.