CTNNB1

General Information

Gene Name : CTNNB1
Gene ID : ENSG00000168036.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTNNB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CTNNB1	ENSG00000168036.17	91.49	99.62	95.56	ENCSR000AEF
HepG2	CTNNB1	ENSG00000168036.17	340.86	265.98	303.42	ENCSR985KAT
K562	CTNNB1	ENSG00000168036.17	115.02	103.39	109.20	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTNNB1 is not avaliable on ENCORE database.

Proteins bound to RNA

CTNNB1 RNA is bound by 71 proteins.

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eCLIP assay for CTNNB1 is not avaliable on ENCORE database.

71 proteins are bound to CTNNB1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	41241260	41241402	+	intron-Distal,intron-Proximal	6.09051	73.69730	HepG2	PRPF4
chr3	41281627	41281685	+	3'-UTR,intron-Distal	4.10180	53.19253	K562	PUM2
chr3	41241465	41241530	+	intron-Distal	5.81833	49.52250	HepG2	FAM120A
chr3	41241070	41241161	+	5'-UTR,intron-Distal	3.75986	49.25776	HepG2	DDX3X
chr3	41241262	41241365	+	intron-Distal	4.28284	45.80844	HepG2	FAM120A
chr3	41241558	41241636	+	5'-UTR,intron-Distal	4.98773	44.57337	HepG2	FAM120A
chr3	41241005	41241070	+	5'-UTR,intron-Distal	4.10467	40.42251	HepG2	DDX3X
chr3	41241068	41241161	+	5'-UTR,intron-Distal	4.82643	34.93479	K562	DDX3X
chr3	41249264	41249395	+	intron-Distal	4.27699	33.52203	HepG2	SUGP2
chr3	41241257	41241382	+	intron-Distal,intron-Proximal	4.20207	33.16378	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 331 entries

eCLIP assay for CTNNB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTNNB1 is not available on ENCORE database.
92 RBPs can affect the levels of CTNNB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CTNNB1 is not available on ENCORE database.

92 RBPs can affect the gene expression of CTNNB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTNNB1	ENSG00000168036.12	8508.18150	3132.54080	1.44140	46.63230	44.32880	K562	PUS1
CTNNB1	ENSG00000168036.12	5476.87820	3052.40880	0.84330	28.30160	26.31870	K562	RBM15
CTNNB1	ENSG00000168036.12	6963.85650	10773.21220	-0.62950	24.57580	22.61290	HepG2	EIF4G1
CTNNB1	ENSG00000168036.12	4747.72520	3035.81890	0.64510	22.81080	21.29350	K562	AGGF1
CTNNB1	ENSG00000168036.12	1720.66450	3343.42840	-0.95840	19.30920	17.56220	HepG2	NSUN2
CTNNB1	ENSG00000168036.12	3239.21110	5397.55170	-0.73670	18.88020	17.19750	HepG2	CALR
CTNNB1	ENSG00000168036.12	3381.99650	7318.80650	-1.11370	15.89980	14.04300	HepG2	RPS3A
CTNNB1	ENSG00000168036.12	11877.28960	8836.42540	0.42660	14.28370	13.38850	HepG2	SRSF1
CTNNB1	ENSG00000168036.12	8984.47200	6675.11100	0.42850	13.79850	12.65970	HepG2	ACO1
CTNNB1	ENSG00000168036.12	2262.64700	3796.75520	-0.74680	13.37300	12.19380	HepG2	BOP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 105 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTNNB1 is not available on ENCORE database.

9 RBPs can affect the splicing of CTNNB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	0.27300	0.00000	0.00000	longer	HepG2	SRSF1
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	0.19800	0.00000	0.00036	longer	HepG2	TIAL1
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	-0.19900	0.00000	0.00001	shorter	HepG2	U2AF1
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	0.20100	0.00000	0.00000	longer	HepG2	SSB
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	0.25900	0.00000	0.00005	longer	K562	SRSF1
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	-0.26100	0.00004	0.00306	shorter	K562	U2AF1
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	0.13100	0.00051	0.08732	longer	HepG2	PRPF8
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281128	41281227	41281150	41281227	41280624	41280845	0.07300	0.00064	0.00463	longer	K562	AQR
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	0.20300	0.00095	0.07500	longer	K562	AKAP8L
A3SS	CTNNB1	ENSG00000168036.12	chr3	+	41281150	41281934	41281309	41281934	41280624	41280845	0.30000	0.00116	0.05435	longer	K562	PUS1

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTNNB1

General Information

Functions

Localization

Domains (AlphaFold: CTNNB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTNNB1 is not avaliable on ENCORE database.

71 proteins are bound to CTNNB1 RNA:

eCLIP assay for CTNNB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTNNB1 is not available on ENCORE database.

92 RBPs can affect the gene expression of CTNNB1 :

The Knockdown/knockout RNA-Seq assay for CTNNB1 is not available on ENCORE database.

9 RBPs can affect the splicing of CTNNB1 :

The Knockdown/knockout RNA-Seq assay for CTNNB1 is not avaliable on ENCORE database.