CLNS1A

General Information

Gene Name       : CLNS1A
Gene ID             : ENSG00000074201.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CLNS1A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLNS1AENSG00000074201.8200.17156.74178.45ENCSR000AEF
HepG2CLNS1AENSG00000074201.8155.70189.15172.43ENCSR985KAT
K562CLNS1AENSG00000074201.8303.56297.18300.37ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq CLNS1A-BGKcLV28-K562ENCSR950KYUCLNS1AK562ReleasedENCSR220DTX   CRISPRKD% = 49.6,53.2
knockdown followed by RNA-seq CLNS1A-BGHcLV29-HepG2ENCSR513CVFCLNS1AHepG2ReleasedENCSR462MFN   CRISPRKD% = 73.3,73.6






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CLNS1AENCAB677WEYA304-521A1Released, ENCODE4BGHcLV29-21, Released, ENCODE4BGKcLV28-21, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CLNS1AK562CRISPRENCSR950KYUENCSR220DTXCLNS1A-BGKcLV28-21,CLNS1A-BGKcLV28-22NT-BGKcLV28-1,NT-BGKcLV28-249.6,53.2ReleasedENCODE4
CLNS1AHepG2CRISPRENCSR513CVFENCSR462MFNCLNS1A-BGHcLV29-21,CLNS1A-BGHcLV29-22NT-BGHcLV29-1,NT-BGHcLV29-273.3,73.6ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
CLNS1AProduct_ID: A304-521A
Lot_ID: 1
Source: Bethyl Labs
Target Name: CLNS1A-human		 CLNS1A-HEPG2-CRISPR-A304-521A.png<br>Caption: Western blot following CRISPR against CLNS1A in HepG2 whole cell lysate using CLNS1A specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CLNS1A. CLNS1A protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 Bethyl_A304-521A_1_CLNS1A.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CLNS1A specific antibody, A304-521A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CLNS1A-specific antibody, A304-521A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 CLNS1A-K562-CRISPR-A304-521A.png<br>Caption: Western blot following CRISPR against CLNS1A in K562 whole cell lysate using CLNS1A specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CLNS1A. CLNS1A protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for CLNS1A is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLNS1A RNA is bound by 32 proteins.  







eCLIP assay for CLNS1A is not avaliable on ENCORE database.





32 proteins are bound to CLNS1A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117733357677333697-3'-UTR,CDS,intron-Distal,intron-Proximal4.2278136.60903HepG2BCLAF1
chr117733065477330700-3'-UTR,5'-UTR,CDS,intron-Distal4.8100114.56239K562GRWD1
chr117733675877336792-3'-UTR,CDS,intron-Distal,intron-Proximal4.448109.24303K562LIN28B
chr117732726077327304-3'-UTR,intron-Distal,intron-Proximal5.583716.23813HepG2SUB1
chr117732770077327739-3'-UTR,intron-Distal3.984057.21441K562GRWD1
chr117733060577330735-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.1507616.50149HepG2PRPF8
chr117733367677333719-3'-UTR,CDS,intron-Distal,intron-Proximal3.571119.80079HepG2GRWD1
chr117733065077330684-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.565777.83850HepG2SUB1
chr117733069377330740-3'-UTR,5'-UTR,CDS,intron-Distal3.0890619.99957K562UCHL5
chr117732767477327750-3'-UTR,intron-Distal3.9948116.89181HepG2U2AF2
chr117732768777327739-3'-UTR,intron-Distal3.435017.55176K562PUM1
chr117733679277336818-3'-UTR,CDS,intron-Distal5.3160618.16764K562ZNF622
chr117732756877327663-3'-UTR,intron-Distal5.523288.51902HepG2IGF2BP1
chr117733065277330671-3'-UTR,5'-UTR,intron-Distal4.334476.82890K562PUM1
chr117733679177336864-3'-UTR,CDS,intron-Distal,intron-Proximal3.253196.73037K562CPSF6
chr117733369477333718-3'-UTR,CDS,intron-Distal3.3889914.13039K562UCHL5
chr117733064977330677-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.179783.07152HepG2HLTF
chr117732756277327605-3'-UTR,intron-Distal5.9247157.83886K562IGF2BP1
chr117733354477333567-3'-UTR,CDS,intron-Distal,intron-Proximal4.041665.97027HepG2GRWD1
chr117733676177336826-3'-UTR,CDS,intron-Distal,intron-Proximal3.4725111.42878HepG2SUB1
chr117733363277333699-3'-UTR,CDS,intron-Distal,intron-Proximal3.4783236.44699K562PUM1
chr117733602577336118-3'-UTR,CDS,intron-Distal,intron-Proximal3.126969.18397HepG2ZNF800
chr117732724277327307-3'-UTR,intron-Distal,intron-Proximal5.026586.78939K562NOLC1
chr117732763977327656-3'-UTR,intron-Distal5.1116223.85706K562IGF2BP1
chr117733360077333645-3'-UTR,CDS,intron-Distal,intron-Proximal3.7421114.97778K562GRWD1
chr117733362077333646-3'-UTR,CDS,intron-Distal,intron-Proximal3.6045710.04249HepG2GRWD1
chr117732768877327747-3'-UTR,intron-Distal3.672053.23382HepG2U2AF1
chr117732771577327741-3'-UTR,intron-Distal4.305356.22576HepG2BCLAF1
chr117733600777336035-3'-UTR,CDS,intron-Distal,intron-Proximal3.460647.42278HepG2BCLAF1
chr117733064377330687-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.709037.97334HepG2BCLAF1
chr117733607677336118-3'-UTR,CDS,intron-Distal,intron-Proximal3.601996.01266K562LIN28B
chr117733364677333676-3'-UTR,CDS,intron-Distal,intron-Proximal4.1324216.80147HepG2GRWD1
chr117732734677327460-3'-UTR,intron-Distal,intron-Proximal7.0473846.48556HepG2SUB1
chr117733357477333694-3'-UTR,CDS,intron-Distal,intron-Proximal4.4479565.15617K562UCHL5
chr117733073377330740-3'-UTR,5'-UTR,CDS,intron-Distal3.4274317.18019K562ZNF622
chr117733369277333708-3'-UTR,CDS,intron-Distal3.7175417.34316K562ZNF622
chr117733679377336817-3'-UTR,CDS,intron-Distal4.2673814.14758K562GRWD1
chr117733367477333695-3'-UTR,CDS,intron-Distal,intron-Proximal3.079138.52516K562GRWD1
chr117733367577333692-3'-UTR,CDS,intron-Distal,intron-Proximal3.8444524.39397K562ZNF622
chr117732752777327566-3'-UTR,intron-Distal3.227086.56666K562YBX3
chr117732765677327665-3'-UTR,intron-Distal5.1229016.93209K562IGF2BP1
chr117732758377327655-3'-UTR,intron-Distal3.037736.10018K562GRWD1
chr117733362577333719-3'-UTR,CDS,intron-Distal,intron-Proximal3.330023.65536K562SRSF1
chr117733676077336794-3'-UTR,CDS,intron-Distal,intron-Proximal3.5175716.33532HepG2BCLAF1
chr117733071277330731-3'-UTR,5'-UTR,CDS,intron-Distal3.091673.47996HepG2GRWD1
chr117733600777336038-3'-UTR,CDS,intron-Distal,intron-Proximal3.5767222.24253K562ZNF622
chr117733073177330740-3'-UTR,5'-UTR,CDS,intron-Distal3.722684.88141HepG2GRWD1
chr117733064477330695-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.3736118.34883K562ZNF622
chr117733073477330741-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.399788.01211K562GRWD1
chr117733369977333719-3'-UTR,CDS,intron-Distal,intron-Proximal3.2698116.96976K562PUM1
chr117732767277327741-3'-UTR,intron-Distal5.5403113.70562K562LIN28B
chr117733072677330784-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.790485.62957HepG2BUD13
chr117732769677327739-3'-UTR,intron-Distal4.510275.85471K562NOLC1
chr117732746077327492-3'-UTR,intron-Distal4.461157.17991HepG2SUB1
chr117733679477336817-3'-UTR,CDS,intron-Distal4.442357.53358HepG2BCLAF1
chr117733681877336863-3'-UTR,CDS,intron-Distal3.8917221.91844K562ZNF622
chr117733676177336817-3'-UTR,CDS,intron-Distal,intron-Proximal3.099389.01884HepG2GRWD1
chr117733354377333576-3'-UTR,CDS,intron-Distal,intron-Proximal3.436567.66871HepG2BCLAF1
chr117733369777333718-3'-UTR,CDS,intron-Distal3.474134.74886HepG2BCLAF1
chr117733369477333719-3'-UTR,CDS,intron-Distal,intron-Proximal3.3042014.67512K562ZNF800
chr117733681777336855-3'-UTR,CDS,intron-Distal3.7082715.54680K562GRWD1
chr117732737577327450-3'-UTR,intron-Distal,intron-Proximal3.8768010.52242K562NOLC1
chr117733603877336094-3'-UTR,CDS,intron-Distal,intron-Proximal3.1755426.24191K562ZNF622
chr117733681777336854-3'-UTR,CDS,intron-Distal5.2413016.53902HepG2BCLAF1
chr117733602877336067-3'-UTR,CDS,intron-Distal3.614895.54854HepG2GRWD1
chr117733064077330695-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.4541212.12483K562PRPF8
chr117733370877333719-3'-UTR,CDS,intron-Distal,intron-Proximal3.3711016.69523K562ZNF622
chr117733360477333675-3'-UTR,CDS,intron-Distal,intron-Proximal3.9334543.35071K562ZNF622
chr117733358977333717-3'-UTR,CDS,intron-Distal,intron-Proximal3.252769.98987HepG2ZNF800
chr117733682377336864-3'-UTR,CDS,intron-Distal,intron-Proximal3.903537.27605HepG2GRWD1
chr117733610777336116-3'-UTR,CDS,intron-Distal,intron-Proximal3.5234014.71474HepG2BCLAF1
chr117733070077330734-3'-UTR,5'-UTR,CDS,intron-Distal4.3115020.81065K562GRWD1
chr117733354377333574-3'-UTR,CDS,intron-Distal,intron-Proximal3.3453120.38796K562UCHL5
chr117733600677336028-3'-UTR,CDS,intron-Distal,intron-Proximal4.031617.03378HepG2GRWD1
chr117732760577327639-3'-UTR,intron-Distal5.7745559.08030K562IGF2BP1
chr117732593077326044-3'-UTR,intron-Distal3.579424.31210K562LSM11
chr117733600677336087-3'-UTR,CDS,intron-Distal,intron-Proximal3.4009330.10108K562UCHL5
chr117733065077330693-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.5434910.40226K562UCHL5
chr117733354477333600-3'-UTR,CDS,intron-Distal,intron-Proximal4.040098.58756K562LIN28B
chr117733067177330740-3'-UTR,5'-UTR,CDS,intron-Distal3.4857611.25090K562PUM1
chr117732768177327740-3'-UTR,intron-Distal5.0861212.39466HepG2SUB1
chr117733364577333674-3'-UTR,CDS,intron-Distal,intron-Proximal4.0640217.90194K562GRWD1
chr117733357777333620-3'-UTR,CDS,intron-Distal,intron-Proximal3.161146.78893HepG2GRWD1
chr117733065877330741-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3063211.10090K562ZNF800
chr117732761577327681-3'-UTR,intron-Distal3.172485.47804HepG2SUB1
chr117733065077330654-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.645226.31550K562GRWD1
chr117732239777322432-5'-UTR,intron-Distal,intron-Proximal4.637115.07478HepG2U2AF2
chr117732329677323344-5'-UTR,intron-Distal,intron-Proximal4.530824.58968K562PRPF8
chr117734874977348827-5'-UTR,CDS,intron-Distal,intron-Proximal4.0607821.16538K562DDX3X
chr117734875477348828-5'-UTR,CDS,intron-Distal,intron-Proximal3.171618.57817HepG2GRWD1
chr117734874377348838-5'-UTR,CDS,intron-Distal,intron-Proximal3.760205.90734HepG2DDX3X
chr117733685577336864-CDS,intron-Distal,intron-Proximal3.032008.65584K562GRWD1
chr117734858377348648-CDS,intron-Distal3.167695.89918HepG2PRPF8
chr117734866277348749-CDS,intron-Distal3.5630424.13753K562DDX3X
chr117734076877340867-CDS,intron-Distal,intron-Proximal5.272485.68502HepG2PRPF8
chr117734083277340933-CDS,intron-Distal3.1145918.53593K562UCHL5
chr117733685477336864-CDS,intron-Distal,intron-Proximal4.045148.19556HepG2BCLAF1
chr117734080677340836-CDS,intron-Distal,intron-Proximal3.6173116.77234K562ZNF622
chr117734082877340897-CDS,intron-Distal3.670566.51299K562GEMIN5
chr117734080777340820-CDS,intron-Distal,intron-Proximal3.969148.19556HepG2BCLAF1
chr117734080777340832-CDS,intron-Distal,intron-Proximal3.2906414.16411K562UCHL5
chr117734853877348625-intron-Distal5.560867.81430K562AQR
chr117732124877321311-intron-Distal5.252888.16423HepG2U2AF2
chr117734605677346157-intron-Distal3.296844.53895HepG2ILF3
chr117732298277323169-intron-Distal3.012653.87340HepG2TAF15
chr117732795577328010-intron-Distal3.574533.73413HepG2RBFOX2
chr117733059777330640-intron-Distal,intron-Proximal5.7810919.08363K562PRPF8
chr117733228377332366-intron-Distal4.889615.18738K562TARDBP
chr117733661977336733-intron-Distal,intron-Proximal3.820387.69735HepG2HNRNPL
chr117724388077243909-intron-Distal5.5711119.26759K562TROVE2
chr117732449777324570-intron-Distal3.503723.76460HepG2HNRNPL
chr117724387677243898-intron-Distal3.995593.71735K562TIA1
chr117724386677243880-intron-Distal5.5640719.26759K562TROVE2
chr117724386877243876-intron-Distal3.995593.71735K562TIA1
chr117730073177300896-intron-Distal3.817923.63122HepG2PRPF4
chr117734823977348290-intron-Distal3.381456.04104K562PTBP1
chr117734823077348291-intron-Distal5.495769.85976HepG2PTBP1
chr117733665477336732-intron-Distal,intron-Proximal4.139415.39582HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLNS1A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLNS1A is not available on ENCORE database.

  • 124 RBPs can affect the levels of CLNS1A.  








The Knockdown/knockout RNA-Seq assay for CLNS1A is not available on ENCORE database.





124 RBPs can affect the gene expression of CLNS1A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLNS1AENSG00000074201.41320.194301623.88030-0.298704.040503.33170HepG2ACO1
CLNS1AENSG00000074201.42927.759903723.66840-0.346902.305701.81560HepG2AKAP1
CLNS1AENSG00000074201.42178.942603002.44130-0.4625010.037608.86550HepG2AUH
CLNS1AENSG00000074201.4964.020701306.90560-0.439003.068502.11980HepG2BCLAF1
CLNS1AENSG00000074201.41012.998302563.47640-1.3395034.9282033.22240HepG2BOP1
CLNS1AENSG00000074201.42173.262702823.61980-0.377702.335301.44750HepG2CCAR1
CLNS1AENSG00000074201.42262.308802927.22630-0.371703.075702.26280HepG2CIRBP
CLNS1AENSG00000074201.41643.229402365.30670-0.525503.080602.27080HepG2CNOT7
CLNS1AENSG00000074201.41617.448102353.42190-0.541006.181305.18500HepG2CPSF6
CLNS1AENSG00000074201.42238.819402645.03030-0.240503.895303.04000HepG2DAZAP1
CLNS1AENSG00000074201.4854.401301501.82690-0.8137023.8049021.94450HepG2DDX19B
CLNS1AENSG00000074201.41559.916103567.13760-1.1933023.8083022.16050HepG2DDX3X
CLNS1AENSG00000074201.42189.113703063.90370-0.485004.132203.38910HepG2DDX6
CLNS1AENSG00000074201.41805.429801553.596700.216602.236101.61620HepG2DKC1
CLNS1AENSG00000074201.41193.625701706.86910-0.516004.867803.67620HepG2EEF2
CLNS1AENSG00000074201.41113.152301422.94400-0.354202.556301.48860HepG2EFTUD2
CLNS1AENSG00000074201.41403.096302945.74370-1.0700019.1697017.70970HepG2EIF2S1
CLNS1AENSG00000074201.41599.073403255.55690-1.0257015.4995014.00280HepG2EIF4A3
CLNS1AENSG00000074201.4898.553603169.42880-1.8185034.5264032.28630HepG2EIF4B
CLNS1AENSG00000074201.41553.470702609.39460-0.7482022.4651020.57480HepG2EIF4G1
CLNS1AENSG00000074201.41157.284903447.24060-1.5747093.6246091.11070HepG2ETF1
CLNS1AENSG00000074201.41204.270402504.63880-1.0564012.8181011.34290HepG2FIP1L1
CLNS1AENSG00000074201.4762.795602180.18420-1.5151046.2435043.39820HepG2FUBP3
CLNS1AENSG00000074201.42052.701903284.22470-0.678008.737407.56830HepG2FXR1
CLNS1AENSG00000074201.41653.187403046.86080-0.8821012.6221011.25620HepG2G3BP1
CLNS1AENSG00000074201.42396.887203234.29250-0.432304.082402.99220HepG2G3BP2
CLNS1AENSG00000074201.4945.709901233.70510-0.383503.077302.12880HepG2GEMIN5
CLNS1AENSG00000074201.41129.221701669.72470-0.564305.206703.80410HepG2GNB2L1
CLNS1AENSG00000074201.4839.158701569.23890-0.9030015.2503013.93280HepG2HNRNPA1
CLNS1AENSG00000074201.41394.116001745.52840-0.324302.638501.96020HepG2HNRNPC
CLNS1AENSG00000074201.42450.321503084.61370-0.332102.863702.15260HepG2HNRNPK
CLNS1AENSG00000074201.41566.329602545.94420-0.700809.381508.29990HepG2HNRNPLL
CLNS1AENSG00000074201.41642.181201945.69140-0.244701.959701.34210HepG2IGF2BP1
CLNS1AENSG00000074201.41626.129003097.16010-0.9295015.3798013.94060HepG2IGF2BP2
CLNS1AENSG00000074201.42264.139903115.04040-0.460303.194002.10630HepG2KHSRP
CLNS1AENSG00000074201.41780.257202543.01110-0.514503.054701.73860HepG2KRR1
CLNS1AENSG00000074201.41592.599103285.36900-1.0447018.4765016.86290HepG2MAGOH
CLNS1AENSG00000074201.42103.584603303.83750-0.651307.053306.08150HepG2MATR3
CLNS1AENSG00000074201.4891.542703381.72690-1.9234053.6432051.09010HepG2NCBP2
CLNS1AENSG00000074201.43467.528402257.444700.619103.977003.08560HepG2NSUN2
CLNS1AENSG00000074201.41506.578702161.78370-0.520902.696001.82080HepG2PABPC1
CLNS1AENSG00000074201.41023.057803011.94950-1.5578033.7835031.34600HepG2PABPC4
CLNS1AENSG00000074201.41968.547103030.59830-0.6225017.5238016.20610HepG2PCBP1
CLNS1AENSG00000074201.41403.476101837.38440-0.388605.999404.90640HepG2PRPF4
CLNS1AENSG00000074201.4813.179301140.78940-0.488403.722202.80200HepG2PRPF8
CLNS1AENSG00000074201.41674.685203083.77560-0.8808031.7249030.27730HepG2PTBP1
CLNS1AENSG00000074201.41546.894402503.66400-0.6947011.8873010.77120HepG2PUF60
CLNS1AENSG00000074201.42114.407602655.79560-0.328903.886403.09430HepG2PUM2
CLNS1AENSG00000074201.42148.722603339.74440-0.6363014.0589012.80810HepG2QKI
CLNS1AENSG00000074201.43576.754602420.063700.5635010.788909.26420HepG2RBM15
CLNS1AENSG00000074201.4957.305302881.24770-1.5896076.4558074.48300HepG2RBM22
CLNS1AENSG00000074201.41829.931303031.05560-0.7280014.1638012.70410HepG2RBM25
CLNS1AENSG00000074201.41817.201803431.92250-0.9173035.5559034.08530HepG2NELFE
CLNS1AENSG00000074201.42339.144103196.41230-0.450509.912508.85680HepG2RECQL
CLNS1AENSG00000074201.41788.749502128.44270-0.250801.887201.31080HepG2RPLP0
CLNS1AENSG00000074201.41088.801901709.21860-0.650604.539703.33840HepG2RPS10
CLNS1AENSG00000074201.4831.890101348.25250-0.6966010.125409.03770HepG2RPS19
CLNS1AENSG00000074201.41250.302301819.18700-0.541005.711604.58560HepG2RPS2
CLNS1AENSG00000074201.41524.523202374.79840-0.639405.322804.20840HepG2RPS3A
CLNS1AENSG00000074201.4696.402701128.47950-0.696406.253405.12150HepG2RRP9
CLNS1AENSG00000074201.41870.822601544.166600.276703.920903.17640HepG2SAFB2
CLNS1AENSG00000074201.41933.900503210.55730-0.7313023.7590022.31530HepG2SF3B4
CLNS1AENSG00000074201.41520.971201800.71920-0.243603.371602.67280HepG2SMN1
CLNS1AENSG00000074201.42879.790503254.24990-0.176402.236101.77000HepG2SRFBP1
CLNS1AENSG00000074201.42207.710703351.14760-0.6021018.3330017.34120HepG2SRSF1
CLNS1AENSG00000074201.42130.575602471.96260-0.214402.541201.93670HepG2SRSF5
CLNS1AENSG00000074201.41657.649901941.22850-0.227802.445001.78770HepG2SRSF7
CLNS1AENSG00000074201.42121.521402825.43610-0.413408.657207.84940HepG2SSB
CLNS1AENSG00000074201.41977.022102811.33750-0.5079014.0532012.83150HepG2SUCLG1
CLNS1AENSG00000074201.41334.894203012.20000-1.1741045.6105043.68900HepG2TAF15
CLNS1AENSG00000074201.41527.353102490.18660-0.705203.320702.15460HepG2TBRG4
CLNS1AENSG00000074201.42215.576102767.74010-0.321003.446102.51660HepG2TIA1
CLNS1AENSG00000074201.41065.440501684.73940-0.6611011.4684010.57350HepG2TIAL1
CLNS1AENSG00000074201.41464.951001699.96190-0.214702.209901.69450HepG2TRIM56
CLNS1AENSG00000074201.42066.995202445.91800-0.242802.073201.32680HepG2TUFM
CLNS1AENSG00000074201.41485.256802142.88530-0.528805.365104.50580HepG2U2AF1
CLNS1AENSG00000074201.4641.94630869.62850-0.437903.014702.22430HepG2UCHL5
CLNS1AENSG00000074201.41300.992601781.87120-0.453808.628907.50950HepG2UPF1
CLNS1AENSG00000074201.41205.390301720.33120-0.513209.939508.91700HepG2UTP3
CLNS1AENSG00000074201.41567.005102127.09450-0.440902.717201.63420HepG2XPO5
CLNS1AENSG00000074201.41418.474501959.72140-0.4663011.0048010.09260HepG2ZNF622
CLNS1AENSG00000074201.45664.200707317.51050-0.369503.615902.19420K562ABCF1
CLNS1AENSG00000074201.46446.589205452.553000.241503.997403.33790K562AGGF1
CLNS1AENSG00000074201.42898.419207080.58030-1.2886038.2255036.25390K562AQR
CLNS1AENSG00000074201.47236.480305952.854100.281603.924202.81810K562ATP5C1
CLNS1AENSG00000074201.43018.504103996.00570-0.404709.328507.54440K562BCLAF1
CLNS1AENSG00000074201.42424.615005657.15390-1.222303.657502.65370K562BOP1
CLNS1AENSG00000074201.43431.481105096.70650-0.570705.972803.82880K562BUD13
CLNS1AENSG00000074201.45518.753206516.26370-0.239702.527801.41130K562CCDC124
CLNS1AENSG00000074201.43786.509204786.32160-0.338003.311701.89520K562CIRBP
CLNS1AENSG00000074201.45315.118408534.53510-0.683204.909003.44520K562CNOT7
CLNS1AENSG00000074201.43072.170006015.82850-0.969502.945302.13610K562CPSF6
CLNS1AENSG00000074201.42603.282903031.56570-0.219702.452201.46570K562CSTF2
CLNS1AENSG00000074201.44282.657306397.33330-0.579008.339905.86350K562DDX19B
CLNS1AENSG00000074201.43488.009704279.17350-0.294904.426502.86770K562DDX21
CLNS1AENSG00000074201.43022.781403503.83460-0.213102.617901.33350K562DDX27
CLNS1AENSG00000074201.42510.364703464.43360-0.464706.495104.81590K562DDX3X
CLNS1AENSG00000074201.45424.570206878.64840-0.342606.910605.94510K562DDX47
CLNS1AENSG00000074201.48205.131706105.492400.426309.097007.32060K562DKC1
CLNS1AENSG00000074201.42008.350203259.30860-0.6986010.112808.25920K562EFTUD2
CLNS1AENSG00000074201.43177.567503805.30320-0.260103.730202.30670K562EIF2S1
CLNS1AENSG00000074201.43399.237305038.45550-0.5678014.6513013.19540K562EIF2S2
CLNS1AENSG00000074201.42551.836603489.90860-0.451703.531202.34930K562EIF3D
CLNS1AENSG00000074201.42628.215003576.74780-0.444607.881306.54490K562EIF3G
CLNS1AENSG00000074201.42318.199203619.44880-0.6428010.318508.71360K562EIF4A3
CLNS1AENSG00000074201.42436.705203259.48210-0.419706.730004.80120K562EIF4B
CLNS1AENSG00000074201.46726.214608942.15430-0.410809.618707.90300K562EIF4G2
CLNS1AENSG00000074201.43056.560106119.70280-1.001603.238502.30790K562FMR1
CLNS1AENSG00000074201.43179.726103764.06940-0.243403.086302.45210K562FXR1
CLNS1AENSG00000074201.44927.960803702.686300.412302.805602.09150K562G3BP2
CLNS1AENSG00000074201.43874.627604904.40360-0.340005.305003.75250K562GLRX3
CLNS1AENSG00000074201.43207.985805744.15620-0.840402.617601.84330K562GPKOW
CLNS1AENSG00000074201.45570.517406714.38990-0.269402.744401.99100K562GRSF1
CLNS1AENSG00000074201.43944.721404996.84760-0.341104.170702.85430K562HNRNPA1
CLNS1AENSG00000074201.41630.514704304.66450-1.4006021.9916020.38870K562HNRNPC
CLNS1AENSG00000074201.42974.155503843.43560-0.369903.338502.07640K562HNRNPF
CLNS1AENSG00000074201.45174.357306216.52110-0.264702.590401.57020K562HNRNPL
CLNS1AENSG00000074201.47293.497206021.261100.276402.738101.91640K562KIF1C
CLNS1AENSG00000074201.43713.083504693.40310-0.338003.583202.61950K562MAGOH
CLNS1AENSG00000074201.48319.245506745.308600.302503.155702.17320K562MBNL1
CLNS1AENSG00000074201.43269.156705606.71770-0.778202.173901.39670K562METAP2
CLNS1AENSG00000074201.46932.047509531.23000-0.459406.063804.41040K562MSI2
CLNS1AENSG00000074201.43687.755805156.30890-0.4836010.031208.59500K562MTPAP
CLNS1AENSG00000074201.46469.850904727.957300.452403.090702.15010K562NAA15
CLNS1AENSG00000074201.42590.322703614.27700-0.480607.809405.77000K562NCBP2
CLNS1AENSG00000074201.44153.469005729.30130-0.4640021.3475019.55960K562NSUN2
CLNS1AENSG00000074201.44725.981108199.20740-0.794906.390804.51070K562PABPC1
CLNS1AENSG00000074201.44299.529706309.90550-0.553402.391701.48530K562PABPN1
CLNS1AENSG00000074201.42974.795604176.07720-0.489406.717905.17470K562PCBP2
CLNS1AENSG00000074201.42643.551804192.21170-0.665208.482707.02860K562PCBP3
CLNS1AENSG00000074201.42140.441703215.53290-0.5871010.649309.12420K562POLR2G
CLNS1AENSG00000074201.42357.125603171.67800-0.428204.219703.29460K562PRPF8
CLNS1AENSG00000074201.43089.417203859.40600-0.321002.484201.63330K562PSIP1
CLNS1AENSG00000074201.43329.111604559.88970-0.453906.766205.76360K562PTBP1
CLNS1AENSG00000074201.46097.088709756.39020-0.6782013.9296012.08600K562PUF60
CLNS1AENSG00000074201.47712.0191010167.79730-0.398809.167407.40050K562PUM2
CLNS1AENSG00000074201.46740.712405626.993600.260402.038901.55940K562PUS1
CLNS1AENSG00000074201.46662.711505482.358500.281203.834203.15280K562RBM15
CLNS1AENSG00000074201.43340.271204372.72100-0.388604.137803.08650K562RBM22
CLNS1AENSG00000074201.43435.169904601.51190-0.421704.228302.84500K562NELFE
CLNS1AENSG00000074201.42010.094003230.83910-0.684607.600706.23290K562RPS19
CLNS1AENSG00000074201.42496.279903310.72800-0.407403.612702.45060K562RPS3
CLNS1AENSG00000074201.44453.598105653.09200-0.344106.141604.96610K562SF3A3
CLNS1AENSG00000074201.42507.851803337.29190-0.412203.334102.18220K562SRFBP1
CLNS1AENSG00000074201.42331.521003166.96910-0.441804.553402.40710K562SRP68
CLNS1AENSG00000074201.44763.956905791.69070-0.281806.663505.28060K562SRPK2
CLNS1AENSG00000074201.42665.026204470.14420-0.7462016.6667014.93950K562SRSF1
CLNS1AENSG00000074201.43119.803403818.65640-0.291604.177402.72040K562SRSF7
CLNS1AENSG00000074201.44939.548106312.38480-0.353803.100901.76410K562STAU1
CLNS1AENSG00000074201.41836.959103071.09870-0.741409.364807.43360K562SUPV3L1
CLNS1AENSG00000074201.43746.855503225.313700.216102.029801.32640K562SYNCRIP
CLNS1AENSG00000074201.42982.270604524.22420-0.601308.196606.89680K562TARDBP
CLNS1AENSG00000074201.43547.843704364.08660-0.298703.351702.43900K562TIA1
CLNS1AENSG00000074201.42278.582703712.20630-0.704105.793504.38960K562TIAL1
CLNS1AENSG00000074201.42252.168803250.26520-0.529205.929204.37930K562UCHL5
CLNS1AENSG00000074201.41376.969706074.88550-2.14140220.13790216.20730K562UPF1
CLNS1AENSG00000074201.44116.156205937.58660-0.528605.824904.09400K562UTP3
CLNS1AENSG00000074201.43709.457705198.11080-0.486807.712306.20910K562WDR3
CLNS1AENSG00000074201.44228.196305405.27320-0.354308.987207.55340K562WDR43
CLNS1AENSG00000074201.45690.104107976.34760-0.487306.914005.45130K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLNS1A is not available on ENCORE database.





6 RBPs can affect the splicing of CLNS1A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLNS1AENSG00000074201.4chr11-773335447733373477330650773307407733600777336115-0.052000.000090.00284excludedK562SRSF1
SECLNS1AENSG00000074201.4chr11-7733354477333734773306507733074077336007773361150.053000.000070.00778includedHepG2AKAP1
SECLNS1AENSG00000074201.4chr11-773335447733371877330650773307407733600777336115-0.064000.000000.00001excludedHepG2SRSF1
SECLNS1AENSG00000074201.4chr11-773335447733373477330650773307407733600777336115-0.053000.000050.00331excludedK562TARDBP
A3SSCLNS1AENSG00000074201.4chr11-7733354477333734773335447733371877336007773361440.052000.000000.00000longerK562AQR
MXECLNS1AENSG00000074201.4chr11-77330650773307407734080777340944773255747732774077348634773488500.143000.000020.002391includedK562LIN28B
MXECLNS1AENSG00000074201.4chr11-77330650773307407733354477333718773272397732774077336007773361150.098000.001930.035561includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLNS1A is not avaliable on ENCORE database.