CCDC88A

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC88A	ENSG00000115355.16	48.52	38.81	43.67	ENCSR000AEF
HepG2	CCDC88A	ENSG00000115355.16	31.35	53.14	42.25	ENCSR985KAT
K562	CCDC88A	ENSG00000115355.16	32.92	37.43	35.17	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC88A is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC88A RNA is bound by 31 proteins.

eCLIP assay for CCDC88A is not avaliable on ENCORE database.

31 proteins are bound to CCDC88A RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	55515900	55515919	-	3'-UTR,intron-Distal	3.93933	3.65750	K562	YBX3
chr2	55517354	55517452	-	3'-UTR,intron-Distal,intron-Proximal	3.55903	5.53561	K562	PUM2
chr2	55522025	55522103	-	3'-UTR,intron-Distal	3.87071	5.80201	HepG2	DROSHA
chr2	55516526	55516608	-	3'-UTR,intron-Distal	4.44031	3.31904	K562	IGF2BP1
chr2	55518030	55518104	-	3'-UTR,intron-Distal	3.68808	3.01531	K562	YBX3
chr2	55521749	55521814	-	3'-UTR,intron-Distal	4.20018	12.68743	HepG2	PCBP2
chr2	55521940	55521996	-	3'-UTR,intron-Distal	4.23919	5.80201	HepG2	DROSHA
chr2	55516862	55516926	-	3'-UTR,intron-Distal	3.78812	15.03494	K562	PTBP1
chr2	55521831	55521995	-	3'-UTR,intron-Distal	5.23912	4.97791	HepG2	RBFOX2
chr2	55521934	55522094	-	3'-UTR,intron-Distal	3.23531	5.99687	HepG2	QKI
chr2	55646709	55646816	-	5'-UTR,intron-Distal,intron-Proximal	3.97743	11.69009	K562	FTO
chr2	55615999	55616022	-	5'-UTR,CDS,intron-Distal	3.85544	10.36594	HepG2	BCLAF1
chr2	55646719	55646828	-	5'-UTR,intron-Distal,intron-Proximal	3.07543	5.02542	HepG2	NCBP2
chr2	55536296	55536364	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.67483	5.41896	HepG2	FXR2
chr2	55646831	55646894	-	5'-UTR,intron-Distal,intron-Proximal	4.40180	5.25929	HepG2	GTF2F1
chr2	55646721	55646817	-	5'-UTR,intron-Distal,intron-Proximal	3.26669	4.08293	K562	FMR1
chr2	55646639	55646715	-	5'-UTR,intron-Distal	3.66769	4.46401	K562	DDX3X
chr2	55536301	55536361	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.01817	3.84771	K562	ZNF622
chr2	55646682	55646878	-	5'-UTR,intron-Distal,intron-Proximal	3.04230	12.51701	HepG2	PRPF4
chr2	55646743	55646824	-	5'-UTR,intron-Distal,intron-Proximal	4.24481	7.76457	HepG2	GTF2F1
chr2	55646895	55646980	-	5'-UTR,intron-Distal	3.78343	6.59200	K562	DDX3X
chr2	55536333	55536379	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.62407	10.81699	HepG2	BCLAF1
chr2	55646723	55646847	-	5'-UTR,intron-Distal,intron-Proximal	3.01398	4.62160	K562	DDX6
chr2	55646714	55646833	-	5'-UTR,intron-Distal,intron-Proximal	4.86049	4.72866	HepG2	FTO
chr2	55646817	55646881	-	5'-UTR,intron-Distal,intron-Proximal	3.32450	4.45876	K562	FMR1
chr2	55646712	55646814	-	5'-UTR,intron-Distal,intron-Proximal	4.60099	51.54598	HepG2	DDX3X
chr2	55646745	55646807	-	5'-UTR,intron-Distal,intron-Proximal	3.68200	3.12941	K562	UCHL5
chr2	55646679	55646807	-	5'-UTR,intron-Distal,intron-Proximal	3.13597	7.31948	HepG2	DROSHA
chr2	55646537	55646553	-	5'-UTR,intron-Distal	4.11850	5.48791	HepG2	DDX3X
chr2	55646719	55646805	-	5'-UTR,intron-Distal,intron-Proximal	3.37928	7.40916	K562	FXR2
chr2	55544761	55544822	-	CDS,intron-Distal	4.40224	4.23295	HepG2	GRWD1
chr2	55615913	55615924	-	CDS,intron-Distal,intron-Proximal	3.70430	9.43524	HepG2	BCLAF1
chr2	55536296	55536326	-	CDS,intron-Distal,intron-Proximal	4.57630	7.49468	HepG2	BCLAF1
chr2	55544812	55544888	-	CDS,intron-Distal	4.86899	18.70260	HepG2	BCLAF1
chr2	55570779	55570878	-	CDS,intron-Distal,intron-Proximal	4.55206	18.02599	K562	UCHL5
chr2	55549727	55549821	-	CDS,intron-Distal	4.10913	14.48007	HepG2	BCLAF1
chr2	55589462	55589573	-	CDS,intron-Distal	3.07006	3.46047	K562	GRWD1
chr2	55570898	55570927	-	CDS,intron-Distal	4.52688	9.14010	HepG2	BCLAF1
chr2	55544888	55544975	-	CDS,intron-Distal,intron-Proximal	4.62006	23.15230	HepG2	BCLAF1
chr2	55566654	55566714	-	CDS,intron-Distal	5.25026	16.55140	HepG2	BCLAF1
chr2	55528290	55528407	-	CDS,intron-Distal,intron-Proximal	4.63025	5.05356	HepG2	PRPF8
chr2	55582731	55582795	-	CDS,intron-Distal,intron-Proximal	3.47218	5.23038	K562	ZNF622
chr2	55573421	55573456	-	CDS,intron-Distal	3.67541	6.06436	HepG2	BCLAF1
chr2	55601891	55601979	-	CDS,intron-Distal,intron-Proximal	4.25291	7.80986	K562	PRPF8
chr2	55527009	55527055	-	CDS,intron-Distal	4.44427	4.23295	HepG2	GRWD1
chr2	55591136	55591169	-	CDS,intron-Distal	4.67807	10.64218	HepG2	BCLAF1
chr2	55530214	55530275	-	CDS,intron-Distal	3.03462	3.60157	HepG2	GRWD1
chr2	55571571	55571623	-	CDS,intron-Distal	4.81936	11.47391	HepG2	BCLAF1
chr2	55544341	55544395	-	CDS,intron-Distal,intron-Proximal	4.50814	13.52497	HepG2	BCLAF1
chr2	55535943	55535994	-	CDS,intron-Distal,intron-Proximal	3.13808	11.30774	HepG2	BCLAF1
chr2	55562269	55562299	-	CDS,intron-Distal	3.03789	5.69345	HepG2	BCLAF1
chr2	55555432	55555513	-	CDS,intron-Distal	3.49407	12.29797	HepG2	BCLAF1
chr2	55549778	55549800	-	CDS,intron-Distal	4.03183	3.20027	K562	ZNF622
chr2	55570783	55570871	-	CDS,intron-Distal,intron-Proximal	3.46308	9.50532	K562	ZNF622
chr2	55602001	55602019	-	CDS,intron-Distal	4.42791	11.99763	HepG2	BCLAF1
chr2	55549663	55549682	-	CDS,intron-Distal,intron-Proximal	4.34436	6.22576	HepG2	BCLAF1
chr2	55559700	55559781	-	CDS,intron-Distal,intron-Proximal	4.94235	23.22002	HepG2	BCLAF1
chr2	55566750	55566783	-	CDS,intron-Distal	3.89536	7.58784	HepG2	BCLAF1
chr2	55528342	55528404	-	CDS,intron-Distal	4.20210	7.27704	K562	ZNF622
chr2	55562033	55562103	-	CDS,intron-Distal	4.08515	11.29515	HepG2	BCLAF1
chr2	55535942	55535996	-	CDS,intron-Distal,intron-Proximal	3.08987	4.04703	HepG2	FXR2
chr2	55570783	55570860	-	CDS,intron-Distal,intron-Proximal	4.37695	3.59099	HepG2	FASTKD2
chr2	55570842	55570905	-	CDS,intron-Distal	4.76583	4.86986	HepG2	FXR2
chr2	55601987	55602069	-	CDS,intron-Distal,intron-Proximal	4.80544	7.56947	K562	SF3B4
chr2	55571503	55571553	-	CDS,intron-Distal,intron-Proximal	3.68336	4.79276	K562	ZNF622
chr2	55529011	55529117	-	CDS,intron-Distal	4.18198	3.96381	K562	FXR1
chr2	55536297	55536322	-	CDS,intron-Distal,intron-Proximal	3.93842	3.34184	HepG2	GRWD1
chr2	55528342	55528411	-	CDS,intron-Distal	4.57099	4.21087	HepG2	GRWD1
chr2	55570871	55570927	-	CDS,intron-Distal	3.64436	6.74842	K562	ZNF622
chr2	55589443	55589508	-	CDS,intron-Distal,intron-Proximal	6.27772	16.75583	HepG2	BCLAF1
chr2	55566612	55566726	-	CDS,intron-Distal	3.66147	10.86716	K562	ZNF622
chr2	55549719	55549800	-	CDS,intron-Distal	3.04826	4.80218	K562	UCHL5
chr2	55561947	55561993	-	CDS,intron-Distal	3.76162	5.76104	HepG2	BCLAF1
chr2	55570784	55570852	-	CDS,intron-Distal	4.97372	18.70260	HepG2	BCLAF1
chr2	55543146	55543205	-	CDS,intron-Distal,intron-Proximal	6.13198	15.35511	HepG2	BCLAF1
chr2	55601979	55602001	-	CDS,intron-Distal	3.69886	7.83567	HepG2	BCLAF1
chr2	55570783	55570801	-	CDS,intron-Distal,intron-Proximal	3.57563	3.02850	K562	YBX3
chr2	55555513	55555566	-	CDS,intron-Distal,intron-Proximal	3.69667	10.37681	HepG2	BCLAF1
chr2	55562021	55562076	-	CDS,intron-Distal	3.67081	3.73423	K562	UCHL5
chr2	55571628	55571649	-	CDS,intron-Distal	3.22039	3.45280	HepG2	BCLAF1
chr2	55562208	55562288	-	CDS,intron-Distal	3.96138	8.13606	K562	UCHL5
chr2	55570878	55570927	-	CDS,intron-Distal	3.65927	6.71596	K562	UCHL5
chr2	55599638	55599701	-	CDS,intron-Distal,intron-Proximal	5.06920	6.02529	K562	SF3B4
chr2	55528281	55528377	-	CDS,intron-Distal,intron-Proximal	3.21253	8.70141	K562	PRPF8
chr2	55523500	55523597	-	CDS,intron-Distal	4.97099	6.92104	HepG2	GRWD1
chr2	55561531	55561635	-	CDS,intron-Distal,intron-Proximal	4.73527	14.51957	HepG2	BCLAF1
chr2	55544395	55544474	-	CDS,intron-Distal	3.84262	12.82131	HepG2	BCLAF1
chr2	55523610	55523691	-	CDS,intron-Distal,intron-Proximal	5.17411	8.16423	HepG2	U2AF2
chr2	55599587	55599610	-	CDS,intron-Distal,intron-Proximal	3.26162	5.40132	HepG2	BCLAF1
chr2	55544867	55544978	-	CDS,intron-Distal,intron-Proximal	4.17956	14.82807	K562	ZNF622
chr2	55561266	55561343	-	CDS,intron-Distal	4.68087	5.23563	HepG2	FXR2
chr2	55570852	55570898	-	CDS,intron-Distal	5.85544	13.23445	HepG2	BCLAF1
chr2	55576660	55576693	-	CDS,intron-Distal	4.35982	8.41475	HepG2	BCLAF1
chr2	55561884	55561903	-	CDS,intron-Distal	3.51444	4.56058	HepG2	BCLAF1
chr2	55536132	55536166	-	CDS,intron-Distal,intron-Proximal	4.11810	3.42472	HepG2	FXR2
chr2	55576687	55576724	-	CDS,intron-Distal	3.48590	4.20387	K562	ZNF622
chr2	55559784	55559828	-	CDS,intron-Distal	3.62140	8.20757	HepG2	BCLAF1
chr2	55563932	55563955	-	CDS,intron-Distal,intron-Proximal	3.90053	3.32022	K562	UCHL5
chr2	55563847	55563905	-	CDS,intron-Distal	3.30736	3.47312	HepG2	FXR2
chr2	55561274	55561351	-	CDS,intron-Distal	5.45203	18.60206	HepG2	BCLAF1
chr2	55570785	55570849	-	CDS,intron-Distal	3.90584	5.74979	HepG2	GRWD1
chr2	55561779	55561817	-	CDS,intron-Distal	4.06880	7.89209	HepG2	BCLAF1
chr2	55545978	55546006	-	CDS,intron-Distal,intron-Proximal	5.26162	7.49561	HepG2	BCLAF1
chr2	55546083	55546140	-	CDS,intron-Distal	3.34600	4.41784	HepG2	GRWD1
chr2	55559699	55559795	-	CDS,intron-Distal,intron-Proximal	3.93375	6.15459	HepG2	GRWD1
chr2	55536136	55536159	-	CDS,intron-Distal	4.47569	6.84316	HepG2	BCLAF1
chr2	55571503	55571538	-	CDS,intron-Distal,intron-Proximal	3.89536	6.36847	HepG2	BCLAF1
chr2	55546043	55546066	-	CDS,intron-Distal	4.26162	5.79432	HepG2	BCLAF1
chr2	55645949	55645998	-	CDS,intron-Distal,intron-Proximal	4.29785	18.56106	HepG2	BCLAF1
chr2	55543233	55543248	-	CDS,intron-Distal,intron-Proximal	3.25716	4.34695	HepG2	BCLAF1
chr2	55527017	55527056	-	CDS,intron-Distal,intron-Proximal	3.03579	3.06445	HepG2	EIF3D
chr2	55591084	55591127	-	CDS,intron-Distal,intron-Proximal	4.48194	16.23926	HepG2	BCLAF1
chr2	55549662	55549717	-	CDS,intron-Distal,intron-Proximal	3.88838	4.49016	HepG2	FXR2
chr2	55528358	55528436	-	CDS,intron-Distal,intron-Proximal	3.65157	3.95921	HepG2	U2AF2
chr2	55566608	55566654	-	CDS,intron-Distal	5.78382	11.63584	HepG2	BCLAF1
chr2	55582759	55582816	-	CDS,intron-Distal,intron-Proximal	4.21862	9.69111	HepG2	BCLAF1
chr2	55589508	55589558	-	CDS,intron-Distal	4.93844	12.89578	HepG2	BCLAF1
chr2	55562220	55562244	-	CDS,intron-Distal	4.05410	5.79432	HepG2	BCLAF1
chr2	55645951	55646004	-	CDS,intron-Distal,intron-Proximal	3.41960	7.20311	HepG2	PPIG
chr2	55546092	55546141	-	CDS,intron-Distal,intron-Proximal	3.73465	6.74842	K562	ZNF622
chr2	55615924	55615944	-	CDS,intron-Distal	4.19475	6.84316	HepG2	BCLAF1
chr2	55543063	55543130	-	CDS,intron-Distal,intron-Proximal	5.94186	12.56307	HepG2	BCLAF1
chr2	55561392	55561474	-	CDS,intron-Distal	4.03973	7.12081	HepG2	HLTF
chr2	55522815	55522887	-	CDS,intron-Distal,intron-Proximal	3.18736	6.20049	K562	YBX3
chr2	55543063	55543133	-	CDS,intron-Distal,intron-Proximal	3.49963	5.53855	K562	YBX3
chr2	55546091	55546141	-	CDS,intron-Distal,intron-Proximal	3.96734	13.23699	HepG2	BCLAF1
chr2	55559696	55559782	-	CDS,intron-Distal,intron-Proximal	3.71573	10.31263	K562	ZNF622
chr2	55561685	55561744	-	CDS,intron-Distal	3.73483	9.12548	HepG2	BCLAF1
chr2	55530073	55530167	-	intron-Distal,intron-Proximal	4.70732	4.35360	K562	QKI
chr2	55639367	55639474	-	intron-Distal	4.09261	6.54646	HepG2	QKI
chr2	55645667	55645736	-	intron-Distal	3.55042	7.01633	K562	KHSRP
chr2	55645643	55645667	-	intron-Distal	4.32780	5.62258	K562	KHSRP
chr2	55645605	55645643	-	intron-Distal	3.63191	4.93120	K562	KHSRP
chr2	55583034	55583111	-	intron-Distal	3.12887	3.46531	K562	KHSRP
chr2	55616389	55616490	-	intron-Distal	5.20758	6.93116	HepG2	QKI
chr2	55645303	55645377	-	intron-Distal	4.53532	8.75493	K562	KHSRP
chr2	55523682	55523772	-	intron-Distal,intron-Proximal	4.10910	4.31512	K562	KHSRP
chr2	55612429	55612568	-	intron-Distal	5.02597	4.85866	HepG2	QKI
chr2	55524926	55525002	-	intron-Distal	3.01278	3.11628	K562	KHSRP
chr2	55616407	55616495	-	intron-Distal	4.51450	6.10779	K562	QKI
chr2	55518639	55518790	-	intron-Distal,intron-Proximal	4.77859	4.85866	HepG2	QKI
chr2	55569441	55569507	-	intron-Distal	3.06787	3.73266	K562	KHSRP
chr2	55541930	55542023	-	intron-Distal	5.29979	6.12104	HepG2	QKI
chr2	55645627	55645735	-	intron-Distal	3.17103	5.14345	HepG2	KHSRP
chr2	55570559	55570654	-	intron-Distal	4.05178	3.66668	K562	KHSRP
chr2	55612464	55612605	-	intron-Distal	4.49617	7.80895	K562	QKI
chr2	55593624	55593692	-	intron-Distal	4.23930	4.66266	K562	TARDBP
chr2	55524266	55524317	-	intron-Distal	3.61623	5.73132	HepG2	ILF3
chr2	55530295	55530377	-	intron-Distal,intron-Proximal	4.07292	3.41738	HepG2	PTBP1
chr2	55570646	55570714	-	intron-Distal,intron-Proximal	3.59811	4.36528	HepG2	U2AF2
chr2	55524910	55524998	-	intron-Distal	3.87074	3.22073	HepG2	KHSRP
chr2	55582903	55583034	-	intron-Distal,intron-Proximal	4.04804	7.69621	K562	KHSRP
chr2	55639405	55639482	-	intron-Distal	4.44961	6.30952	K562	QKI
chr2	55530075	55530158	-	intron-Distal,intron-Proximal	5.85944	15.06634	HepG2	QKI
chr2	55643166	55643253	-	intron-Distal	3.83445	7.82071	K562	KHSRP
chr2	55523662	55523810	-	intron-Distal,intron-Proximal	3.57293	5.04794	HepG2	KHSRP
chr2	55615171	55615283	-	intron-Distal	3.93103	5.56048	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CCDC88A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC88A is not available on ENCORE database.
119 RBPs can affect the levels of CCDC88A.

The Knockdown/knockout RNA-Seq assay for CCDC88A is not available on ENCORE database.

119 RBPs can affect the gene expression of CCDC88A :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC88A	ENSG00000115355.11	2226.19390	3375.63850	-0.60060	5.86410	5.12300	HepG2	AKAP1
CCDC88A	ENSG00000115355.11	2464.73880	3003.10910	-0.28500	4.20860	3.27690	HepG2	AKAP8L
CCDC88A	ENSG00000115355.11	1875.76610	2793.07220	-0.57440	6.31970	5.15590	HepG2	ASCC1
CCDC88A	ENSG00000115355.11	1487.32640	2648.09860	-0.83220	5.01790	3.75260	HepG2	BCCIP
CCDC88A	ENSG00000115355.11	2476.78240	3265.19960	-0.39870	4.22270	3.50140	HepG2	BOP1
CCDC88A	ENSG00000115355.11	2101.57440	2653.60610	-0.33650	2.65980	1.90090	HepG2	CIRBP
CCDC88A	ENSG00000115355.11	1764.92750	2988.44220	-0.75980	31.45930	29.76620	HepG2	CKAP4
CCDC88A	ENSG00000115355.11	2111.69320	2997.63270	-0.50540	5.81720	4.85320	HepG2	CPSF6
CCDC88A	ENSG00000115355.11	2102.48330	2674.85930	-0.34740	4.49150	3.19530	HepG2	YBX3
CCDC88A	ENSG00000115355.11	2514.59160	3338.72500	-0.40900	4.36420	3.58970	HepG2	CELF1
CCDC88A	ENSG00000115355.11	3252.13870	3590.38260	-0.14270	2.11770	1.45600	HepG2	DAZAP1
CCDC88A	ENSG00000115355.11	2445.16130	2764.41130	-0.17700	2.20820	1.45760	HepG2	DDX19B
CCDC88A	ENSG00000115355.11	2092.75360	2678.61860	-0.35610	5.05440	3.52310	HepG2	DDX1
CCDC88A	ENSG00000115355.11	2069.71140	3233.63800	-0.64370	7.69300	6.69750	HepG2	DDX3X
CCDC88A	ENSG00000115355.11	1796.99540	2603.45950	-0.53480	2.54490	1.79920	HepG2	DDX55
CCDC88A	ENSG00000115355.11	2055.36150	2777.68740	-0.43450	3.34820	2.67580	HepG2	DDX6
CCDC88A	ENSG00000115355.11	2365.27370	2859.64520	-0.27380	3.89410	3.11730	HepG2	DKC1
CCDC88A	ENSG00000115355.11	1999.71930	2626.54970	-0.39340	6.22720	5.20570	HepG2	DNAJC21
CCDC88A	ENSG00000115355.11	1730.80640	2603.30080	-0.58890	18.96940	17.40830	HepG2	DNAJC2
CCDC88A	ENSG00000115355.11	1837.87170	2670.33230	-0.53900	5.57830	4.75310	HepG2	EIF2S1
CCDC88A	ENSG00000115355.11	2849.82370	2266.94050	0.33000	3.52920	2.32790	HepG2	EIF3G
CCDC88A	ENSG00000115355.11	2623.58000	1982.62590	0.40400	3.44580	1.47620	HepG2	EIF3H
CCDC88A	ENSG00000115355.11	1946.12890	2951.06680	-0.60060	5.84900	4.92100	HepG2	EIF4A3
CCDC88A	ENSG00000115355.11	2155.07290	2873.20940	-0.41490	2.53820	1.87750	HepG2	EIF4B
CCDC88A	ENSG00000115355.11	4507.39730	3541.75930	0.34770	6.20300	5.03980	HepG2	EIF4G1
CCDC88A	ENSG00000115355.11	4636.52070	3392.84580	0.45040	4.89470	3.82980	HepG2	EIF4G2
CCDC88A	ENSG00000115355.11	3371.69150	4901.32820	-0.53970	14.39200	13.19180	HepG2	ETF1
CCDC88A	ENSG00000115355.11	2292.52210	1523.91690	0.58910	8.15130	6.83780	HepG2	FUBP3
CCDC88A	ENSG00000115355.11	2101.16570	3398.05480	-0.69350	8.43420	7.36050	HepG2	GPKOW
CCDC88A	ENSG00000115355.11	1167.17060	1821.22690	-0.64190	3.91140	2.59000	HepG2	GRSF1
CCDC88A	ENSG00000115355.11	1825.58340	2651.71220	-0.53860	7.55570	6.56580	HepG2	HNRNPA1
CCDC88A	ENSG00000115355.11	1699.62760	2949.52110	-0.79530	14.65240	13.18090	HepG2	HNRNPC
CCDC88A	ENSG00000115355.11	2213.34330	2762.60770	-0.31980	4.84590	3.93000	HepG2	HNRNPF
CCDC88A	ENSG00000115355.11	2846.59400	3270.69520	-0.20040	2.74760	2.07610	HepG2	HNRNPL
CCDC88A	ENSG00000115355.11	2528.60650	3242.82590	-0.35890	3.08270	2.42250	HepG2	HNRNPLL
CCDC88A	ENSG00000115355.11	2002.90250	2930.02200	-0.54880	14.38820	13.09720	HepG2	HNRNPU
CCDC88A	ENSG00000115355.11	2103.71510	2720.38690	-0.37090	4.48010	3.57750	HepG2	IGF2BP1
CCDC88A	ENSG00000115355.11	2233.24540	2807.56030	-0.33020	2.56870	1.91600	HepG2	IGF2BP2
CCDC88A	ENSG00000115355.11	2483.05270	2992.92360	-0.26940	5.38610	4.39050	HepG2	ILF2
CCDC88A	ENSG00000115355.11	1830.63470	3065.68720	-0.74390	9.51590	8.38120	HepG2	NCBP2
CCDC88A	ENSG00000115355.11	2165.10560	3560.19280	-0.71750	12.35180	10.79030	HepG2	NOL12
CCDC88A	ENSG00000115355.11	2027.00110	2730.26010	-0.42970	3.67270	2.84830	HepG2	PABPC4
CCDC88A	ENSG00000115355.11	2376.59980	2900.24320	-0.28730	4.25630	3.23260	HepG2	PARN
CCDC88A	ENSG00000115355.11	2123.51880	2613.34870	-0.29940	3.77940	2.93020	HepG2	PPIL4
CCDC88A	ENSG00000115355.11	4804.55970	3167.44800	0.60100	3.76810	2.35490	HepG2	PRPF6
CCDC88A	ENSG00000115355.11	1307.12110	2009.28790	-0.62030	3.08970	2.23980	HepG2	PRPF8
CCDC88A	ENSG00000115355.11	3940.85730	2593.33120	0.60360	17.18040	16.04020	HepG2	PTBP1
CCDC88A	ENSG00000115355.11	2361.03920	3398.39520	-0.52540	4.99230	4.22030	HepG2	PUF60
CCDC88A	ENSG00000115355.11	3244.02990	3607.40560	-0.15320	2.45440	1.88850	HepG2	PUM1
CCDC88A	ENSG00000115355.11	2921.90670	3604.85820	-0.30300	3.82600	3.04140	HepG2	PUM2
CCDC88A	ENSG00000115355.11	2455.39260	3044.45190	-0.31020	5.70230	4.87580	HepG2	PUS1
CCDC88A	ENSG00000115355.11	4027.19320	2808.56210	0.51980	10.24320	9.14840	HepG2	QKI
CCDC88A	ENSG00000115355.11	4488.71590	3817.61070	0.23350	2.21300	1.43540	HepG2	RBM15
CCDC88A	ENSG00000115355.11	2822.04260	4096.61940	-0.53770	12.56290	11.62080	HepG2	RBM22
CCDC88A	ENSG00000115355.11	3863.14760	2886.09760	0.42060	9.12630	8.24710	HepG2	NELFE
CCDC88A	ENSG00000115355.11	3761.07220	2688.06400	0.48450	12.10330	10.95130	HepG2	RECQL
CCDC88A	ENSG00000115355.11	2370.19830	2975.90120	-0.32830	3.00170	2.29350	HepG2	RPLP0
CCDC88A	ENSG00000115355.11	1573.30660	2173.95610	-0.46650	1.84390	1.33210	HepG2	RPS19
CCDC88A	ENSG00000115355.11	2301.72640	2609.32500	-0.18100	2.22320	1.63450	HepG2	SAFB2
CCDC88A	ENSG00000115355.11	2724.39240	3981.10170	-0.54720	2.41540	1.78660	HepG2	SF3A3
CCDC88A	ENSG00000115355.11	2340.59510	3042.93220	-0.37860	9.75560	8.66480	HepG2	SMN1
CCDC88A	ENSG00000115355.11	2276.79640	3571.41950	-0.64950	4.81430	3.77030	HepG2	SNRNP70
CCDC88A	ENSG00000115355.11	3671.88540	4627.00900	-0.33360	7.40940	6.69800	HepG2	SRFBP1
CCDC88A	ENSG00000115355.11	4569.53280	2818.16500	0.69720	27.18110	26.03380	HepG2	SRSF1
CCDC88A	ENSG00000115355.11	4874.24940	3453.70500	0.49690	4.14390	2.89280	HepG2	SRSF3
CCDC88A	ENSG00000115355.11	2719.90120	3355.25130	-0.30290	5.30920	4.48300	HepG2	SRSF5
CCDC88A	ENSG00000115355.11	1801.24830	2714.14670	-0.59150	15.03710	13.64030	HepG2	SRSF7
CCDC88A	ENSG00000115355.11	3086.40780	2292.75090	0.42870	9.80060	8.87190	HepG2	SRSF9
CCDC88A	ENSG00000115355.11	1249.87350	1717.24000	-0.45830	2.77720	1.67330	HepG2	STIP1
CCDC88A	ENSG00000115355.11	3728.10500	2717.50620	0.45610	2.46810	1.33520	HepG2	SUB1
CCDC88A	ENSG00000115355.11	5095.28670	3815.98970	0.41700	11.80750	10.67430	HepG2	SUCLG1
CCDC88A	ENSG00000115355.11	1762.50400	2273.46570	-0.36730	3.40860	2.37280	HepG2	SUPT6H
CCDC88A	ENSG00000115355.11	1790.21610	2591.97330	-0.53390	2.40020	1.76480	HepG2	SUPV3L1
CCDC88A	ENSG00000115355.11	4237.47040	2533.15250	0.74220	21.71610	20.35420	HepG2	TAF15
CCDC88A	ENSG00000115355.11	2529.54620	3160.73920	-0.32140	2.78630	2.05970	HepG2	TARDBP
CCDC88A	ENSG00000115355.11	1030.86730	1737.47310	-0.75310	3.92220	2.75900	HepG2	TFIP11
CCDC88A	ENSG00000115355.11	2915.59500	2327.54150	0.32490	2.19270	1.44610	HepG2	TIA1
CCDC88A	ENSG00000115355.11	1257.74210	2847.13300	-1.17870	38.64060	37.17020	HepG2	TIAL1
CCDC88A	ENSG00000115355.11	1743.94000	2872.51010	-0.72000	23.21830	21.78280	HepG2	TRIM56
CCDC88A	ENSG00000115355.11	1817.24570	3677.26870	-1.01690	3.34870	2.25950	HepG2	U2AF2
CCDC88A	ENSG00000115355.11	918.48990	1531.34260	-0.73750	4.71910	3.72280	HepG2	UCHL5
CCDC88A	ENSG00000115355.11	3053.72870	3530.63060	-0.20940	2.92060	2.20620	HepG2	UPF1
CCDC88A	ENSG00000115355.11	4891.78910	2858.60650	0.77500	6.36200	4.46130	HepG2	XRCC5
CCDC88A	ENSG00000115355.11	1796.98810	2551.50540	-0.50580	2.26650	1.60500	HepG2	XRN2
CCDC88A	ENSG00000115355.11	2610.72980	3883.01490	-0.57270	22.63030	21.43830	HepG2	ZNF622
CCDC88A	ENSG00000115355.11	2578.09440	4346.51730	-0.75360	28.39860	26.67810	K562	AGGF1
CCDC88A	ENSG00000115355.11	2156.63640	2673.86180	-0.31010	4.20220	2.30680	K562	AKAP1
CCDC88A	ENSG00000115355.11	3469.32300	4776.05120	-0.46120	4.94670	3.53930	K562	AKAP8
CCDC88A	ENSG00000115355.11	2862.14560	4522.72010	-0.66010	11.25210	9.81400	K562	AKAP8L
CCDC88A	ENSG00000115355.11	3040.95940	4674.54700	-0.62030	9.96380	8.95610	K562	AQR
CCDC88A	ENSG00000115355.11	3981.14770	4745.36900	-0.25330	3.13110	2.15600	K562	ATP5C1
CCDC88A	ENSG00000115355.11	2150.10740	2666.38460	-0.31050	4.78910	3.50750	K562	BCLAF1
CCDC88A	ENSG00000115355.11	3217.32550	4411.51800	-0.45540	4.02740	2.23530	K562	CKAP4
CCDC88A	ENSG00000115355.11	3131.30440	4858.16230	-0.63360	4.02510	2.70160	K562	CNOT7
CCDC88A	ENSG00000115355.11	4397.77630	5263.71640	-0.25930	2.72590	1.62820	K562	CPEB4
CCDC88A	ENSG00000115355.11	1559.56950	2022.84940	-0.37520	4.76320	3.32210	K562	CSTF2
CCDC88A	ENSG00000115355.11	1846.87100	2709.26960	-0.55280	8.52310	6.60860	K562	DDX3X
CCDC88A	ENSG00000115355.11	4746.23160	5446.26110	-0.19850	2.75530	2.10570	K562	DDX47
CCDC88A	ENSG00000115355.11	1984.46210	2633.35890	-0.40820	3.15570	1.34010	K562	DDX51
CCDC88A	ENSG00000115355.11	3760.29540	4866.94710	-0.37220	6.70830	5.25070	K562	DKC1
CCDC88A	ENSG00000115355.11	1585.03750	2438.61630	-0.62150	7.55710	5.98250	K562	EFTUD2
CCDC88A	ENSG00000115355.11	2146.17270	2830.49830	-0.39930	4.25820	3.24030	K562	EIF4A3
CCDC88A	ENSG00000115355.11	1739.24410	2548.99850	-0.55150	10.32820	7.97660	K562	EIF4B
CCDC88A	ENSG00000115355.11	1796.22350	2470.72420	-0.46000	7.33330	5.00530	K562	EWSR1
CCDC88A	ENSG00000115355.11	2162.35260	3519.12740	-0.70260	11.59000	9.72930	K562	FIP1L1
CCDC88A	ENSG00000115355.11	2839.21240	3667.66250	-0.36940	4.19760	2.40160	K562	G3BP1
CCDC88A	ENSG00000115355.11	4533.13730	2978.66100	0.60570	5.42680	4.36070	K562	G3BP2
CCDC88A	ENSG00000115355.11	2223.51620	2960.19160	-0.41280	4.65810	3.63260	K562	GPKOW
CCDC88A	ENSG00000115355.11	1848.40240	4572.58190	-1.30670	36.80280	33.94100	K562	GRSF1
CCDC88A	ENSG00000115355.11	1726.54450	2437.36690	-0.49740	4.11770	3.40460	K562	HNRNPC
CCDC88A	ENSG00000115355.11	3031.79310	3831.88600	-0.33790	2.80980	1.56540	K562	HNRNPK
CCDC88A	ENSG00000115355.11	4018.40140	4922.04550	-0.29260	2.99840	1.89440	K562	HNRNPL
CCDC88A	ENSG00000115355.11	2111.15340	2894.50170	-0.45530	3.99140	2.85880	K562	HNRNPM
CCDC88A	ENSG00000115355.11	2792.41560	3345.56300	-0.26070	3.12910	2.18190	K562	HNRNPU
CCDC88A	ENSG00000115355.11	3527.81160	4771.23270	-0.43560	4.98920	3.93130	K562	HSPD1
CCDC88A	ENSG00000115355.11	4043.53440	4799.83500	-0.24740	2.64430	1.83960	K562	KIF1C
CCDC88A	ENSG00000115355.11	3213.04680	4031.79080	-0.32750	3.45220	2.50780	K562	MAGOH
CCDC88A	ENSG00000115355.11	3490.42420	4594.54320	-0.39650	4.61630	3.12070	K562	MAK16
CCDC88A	ENSG00000115355.11	4486.83930	5377.01380	-0.26110	2.61490	1.73510	K562	MBNL1
CCDC88A	ENSG00000115355.11	2116.70200	2889.49370	-0.44900	5.70610	4.41970	K562	METAP2
CCDC88A	ENSG00000115355.11	5490.34890	6883.16290	-0.32620	2.91310	1.74830	K562	MSI2
CCDC88A	ENSG00000115355.11	1920.68300	3617.00780	-0.91320	39.94550	37.53570	K562	MTPAP
CCDC88A	ENSG00000115355.11	2197.13770	2826.44950	-0.36340	4.49860	2.91680	K562	NCBP2
CCDC88A	ENSG00000115355.11	3487.07400	4018.86860	-0.20480	4.20000	3.30200	K562	NSUN2
CCDC88A	ENSG00000115355.11	2054.76780	3295.65740	-0.68160	3.53530	2.37690	K562	PABPN1
CCDC88A	ENSG00000115355.11	2468.11870	3587.53340	-0.53960	7.68690	6.02900	K562	PCBP2
CCDC88A	ENSG00000115355.11	2199.62940	3994.86130	-0.86090	16.25370	13.70550	K562	PPIG
CCDC88A	ENSG00000115355.11	1498.80650	2373.04650	-0.66290	8.52250	7.20210	K562	PRPF8
CCDC88A	ENSG00000115355.11	1478.36810	2185.25160	-0.56380	5.61120	4.25320	K562	PSIP1
CCDC88A	ENSG00000115355.11	5426.16480	7045.71950	-0.37680	3.88910	2.92720	K562	PUF60
CCDC88A	ENSG00000115355.11	6057.34890	7342.87420	-0.27770	4.07150	2.90010	K562	PUM2
CCDC88A	ENSG00000115355.11	3339.92250	4485.49880	-0.42550	4.77890	4.09000	K562	PUS1
CCDC88A	ENSG00000115355.11	3254.82020	4370.27590	-0.42510	7.48180	6.53660	K562	RBM15
CCDC88A	ENSG00000115355.11	2699.27140	3756.68550	-0.47690	5.35630	4.14190	K562	RBM22
CCDC88A	ENSG00000115355.11	1811.31700	2417.44220	-0.41640	2.88240	2.04740	K562	RPS19
CCDC88A	ENSG00000115355.11	3243.11330	3965.52620	-0.29010	4.10010	3.11900	K562	SF3A3
CCDC88A	ENSG00000115355.11	1886.61970	3099.02220	-0.71600	9.30410	7.68890	K562	SF3B4
CCDC88A	ENSG00000115355.11	3214.09400	3839.85870	-0.25660	2.28730	1.63690	K562	SRSF1
CCDC88A	ENSG00000115355.11	2342.40140	2808.48580	-0.26180	3.05600	1.82130	K562	SRSF7
CCDC88A	ENSG00000115355.11	2298.57300	3886.50280	-0.75770	10.91740	9.35480	K562	TARDBP
CCDC88A	ENSG00000115355.11	2971.36420	3748.88800	-0.33530	3.84810	2.86040	K562	TIA1
CCDC88A	ENSG00000115355.11	1499.89950	2101.90680	-0.48680	3.87580	2.75890	K562	TIAL1
CCDC88A	ENSG00000115355.11	2938.35860	3678.02770	-0.32390	3.10560	1.93740	K562	TRA2A
CCDC88A	ENSG00000115355.11	1621.18380	2232.44990	-0.46160	4.35010	3.10310	K562	TRIM56
CCDC88A	ENSG00000115355.11	2477.94770	2983.32240	-0.26780	2.14630	1.43880	K562	U2AF2
CCDC88A	ENSG00000115355.11	3034.43590	3646.25560	-0.26500	2.52750	1.68810	K562	WDR3
CCDC88A	ENSG00000115355.11	4179.25320	5266.04830	-0.33350	3.45370	2.47130	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC88A is not available on ENCORE database.

24 RBPs can affect the splicing of CCDC88A :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.40600	0.00000	0.00000	included	HepG2	G3BP1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.08000	0.00560	0.08289	excluded	K562	SRSF1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55589443	55589584			55582714	55582887	55591085	55591169	-0.22600	0.00001	0.00052	excluded	K562	SRSF1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55544341	55544485			55543063	55543250	55544699	55544977	-0.18000	0.00004	0.00152	excluded	K562	SF3B4
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	-0.29400	0.00014	0.00408	excluded	K562	SF3B4
SE	CCDC88A	ENSG00000115355.11	chr2	-	55544341	55544485			55543063	55543250	55544699	55544977	-0.19200	0.00127	0.02508	excluded	HepG2	U2AF1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.13000	0.00416	0.06548	excluded	HepG2	U2AF1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.08700	0.00336	0.07810	excluded	K562	AKAP8L
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.34100	0.00000	0.00001	included	HepG2	HNRNPK
SE	CCDC88A	ENSG00000115355.11	chr2	-	55544341	55544485			55543063	55543250	55544699	55544977	-0.37100	0.00048	0.00758	excluded	HepG2	U2AF2
SE	CCDC88A	ENSG00000115355.11	chr2	-	55518099	55518300			55515313	55515491	55518811	55518911	-0.36600	0.00035	0.00574	excluded	HepG2	U2AF2
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.08700	0.00677	0.06741	excluded	HepG2	U2AF2
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	-0.16700	0.00412	0.04559	excluded	HepG2	U2AF2
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.10100	0.00059	0.00780	excluded	K562	AQR
SE	CCDC88A	ENSG00000115355.11	chr2	-	55526974	55527055			55523393	55523659	55528341	55528413	-0.08300	0.00275	0.02853	excluded	K562	AQR
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.20900	0.00258	0.08012	included	K562	FXR1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55591085	55591169			55582714	55582887	55599587	55599646	-0.21900	0.00813	0.08976	excluded	K562	PUS1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	-0.24000	0.00010	0.02813	excluded	K562	MTPAP
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.42400	0.00000	0.00000	included	HepG2	PTBP1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.26700	0.00002	0.00195	included	HepG2	MATR3
SE	CCDC88A	ENSG00000115355.11	chr2	-	55544341	55544485			55543063	55543250	55544699	55544977	-0.09900	0.00588	0.09144	excluded	K562	U2AF1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.26900	0.00000	0.00025	included	K562	HNRNPL
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.11100	0.00041	0.05768	excluded	HepG2	HNRNPUL1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55544341	55544485			55543063	55543250	55544699	55544977	-0.12300	0.00010	0.00383	excluded	HepG2	SRSF1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	-0.28000	0.00054	0.04245	excluded	HepG2	TIAL1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.12100	0.00084	0.08405	excluded	HepG2	RBFOX2
SE	CCDC88A	ENSG00000115355.11	chr2	-	55526974	55527055			55523393	55523659	55528341	55528413	-0.08100	0.00374	0.09000	excluded	K562	UTP18
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	-0.17700	0.00049	0.07601	excluded	K562	UPF1
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.23800	0.00031	0.03852	included	HepG2	TAF15
SE	CCDC88A	ENSG00000115355.11	chr2	-	55544341	55544485			55543063	55543250	55544699	55544977	-0.28000	0.00000	0.00000	excluded	K562	U2AF2
SE	CCDC88A	ENSG00000115355.11	chr2	-	55539569	55539715			55536297	55536390	55543063	55543250	-0.09300	0.00320	0.05084	excluded	K562	U2AF2
SE	CCDC88A	ENSG00000115355.11	chr2	-	55544341	55544485			55543063	55543250	55544699	55544977	-0.16100	0.00159	0.05565	excluded	HepG2	HNRNPC
SE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288			55529007	55529208	55535944	55536159	0.32600	0.00000	0.00002	included	K562	PTBP1
RI	CCDC88A	ENSG00000115355.11	chr2	-	55522732	55523192			55522732	55522863	55523085	55523192	-0.10300	0.00437	0.05916	excluded	K562	FXR1
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55535944	55536159	55539569	55539715	55529007	55529208	55543063	55543250	0.13300	0.00289	0.07358	1included	K562	PTBP1
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55528341	55528413	55530204	55530288	55526974	55527055	55535944	55536159	0.25100	0.00003	0.00233	1included	HepG2	PTBP1
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55530204	55530288	55535944	55536159	55529007	55529208	55536297	55536390	-0.21000	0.00001	0.00141	2included	HepG2	PTBP1
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55536297	55536390	55539569	55539715	55535944	55536159	55543063	55543250	-0.11800	0.00053	0.02512	2included	K562	LIN28B
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55563816	55563954	55566599	55566818	55561229	55562300	55570783	55570928	0.09600	0.00133	0.01169	1included	K562	AQR
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55563816	55563954	55566599	55566823	55561229	55562300	55570783	55570928	0.08000	0.00373	0.02813	1included	K562	AQR
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55536297	55536390	55539569	55539715	55529007	55529208	55543063	55543250	-0.09200	0.00137	0.01196	2included	K562	AQR
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55591085	55591169	55599587	55599646	55582714	55582887	55601949	55602019	-0.12500	0.01732	0.09806	2included	K562	AQR
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55536297	55536390	55539569	55539715	55535944	55536159	55543063	55543250	-0.19300	0.00167	0.02407	2included	K562	U2AF2
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55535944	55536159	55536297	55536390	55529007	55529208	55539569	55539715	-0.16400	0.00295	0.06031	2included	K562	TARDBP
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55536297	55536390	55539569	55539715	55535944	55536159	55543063	55543250	-0.20100	0.00071	0.03099	2included	K562	TAF15
MXE	CCDC88A	ENSG00000115355.11	chr2	-	55536297	55536390	55539569	55539715	55535944	55536159	55543063	55543250	-0.07500	0.00380	0.08405	2included	K562	DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC88A

General Information

Functions

Localization

Domains (AlphaFold: CCDC88A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC88A is not avaliable on ENCORE database.

31 proteins are bound to CCDC88A RNA:

eCLIP assay for CCDC88A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC88A is not available on ENCORE database.

119 RBPs can affect the gene expression of CCDC88A :

The Knockdown/knockout RNA-Seq assay for CCDC88A is not available on ENCORE database.

24 RBPs can affect the splicing of CCDC88A :

The Knockdown/knockout RNA-Seq assay for CCDC88A is not avaliable on ENCORE database.