CA1

General Information

Gene Name       : CA1
Gene ID             : ENSG00000133742.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CA1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CA1ENSG00000133742.130.000.000.00ENCSR000AEF
HepG2CA1ENSG00000133742.130.000.000.00ENCSR985KAT
K562CA1ENSG00000133742.139.279.709.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CA1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • CA1 RNA is bound by 3 proteins.  







eCLIP assay for CA1 is not avaliable on ENCORE database.





3 proteins are bound to CA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr88624065186240693-3'-UTR,intron-Distal,intron-Proximal6.1267224.55662K562PABPC4
chr88624080486240884-CDS,intron-Distal,intron-Proximal4.068094.00727K562IGF2BP2
chr88624196386242037-CDS,intron-Distal,intron-Proximal4.382674.54113K562IGF2BP2
chr88624191586242024-CDS,intron-Distal,intron-Proximal4.485275.03175K562IGF2BP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CA1 is not available on ENCORE database.

  • 121 RBPs can affect the levels of CA1.  








The Knockdown/knockout RNA-Seq assay for CA1 is not available on ENCORE database.





121 RBPs can affect the gene expression of CA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CA1ENSG00000133742.9263.85460838.45200-1.6680022.2921019.08510K562AARS
CA1ENSG00000133742.92282.65840469.204502.282305.297402.93280K562ADAR
CA1ENSG00000133742.91208.56910621.702000.9589022.3162020.81340K562AGGF1
CA1ENSG00000133742.9582.43110362.429100.684303.523801.79700K562AKAP1
CA1ENSG00000133742.91104.72660683.113200.693407.016605.27260K562AKAP8
CA1ENSG00000133742.91611.97990646.898401.3171030.0042027.41900K562AKAP8L
CA1ENSG00000133742.91027.512801351.92260-0.395903.576502.14730K562APOBEC3C
CA1ENSG00000133742.94792.645101234.134401.9572077.1400074.42870K562AQR
CA1ENSG00000133742.91178.00880678.732100.7953014.4015012.12480K562ATP5C1
CA1ENSG00000133742.91030.51670459.522301.165103.504002.28900K562CCAR1
CA1ENSG00000133742.9469.49520743.00260-0.662307.685805.71610K562CCDC124
CA1ENSG00000133742.93078.256501848.269900.735803.332701.66530K562CEBPZ
CA1ENSG00000133742.92791.887202086.680300.419902.846901.38960K562CKAP4
CA1ENSG00000133742.94220.42270966.501602.1264021.7390018.97850K562CNOT7
CA1ENSG00000133742.93207.268501708.490800.9085022.7109020.42980K562CPSF6
CA1ENSG00000133742.91446.89290491.157901.558604.976802.44060K562CPSF7
CA1ENSG00000133742.91210.15450501.832501.269805.232102.74490K562YBX3
CA1ENSG00000133742.96310.933101883.728601.7442093.9456090.29590K562CELF1
CA1ENSG00000133742.9543.47200729.42580-0.424603.085401.52950K562DDX19B
CA1ENSG00000133742.94141.781002124.738000.962906.390804.51460K562DDX21
CA1ENSG00000133742.9500.21120857.86260-0.778204.818703.06150K562DDX27
CA1ENSG00000133742.9552.00930772.02590-0.484003.727201.31420K562DDX28
CA1ENSG00000133742.92529.787801529.844200.7255020.5774018.95440K562DDX47
CA1ENSG00000133742.91369.69200514.520601.4125020.1919016.61800K562DHX30
CA1ENSG00000133742.9533.50180696.17590-0.384003.411202.42450K562DKC1
CA1ENSG00000133742.92571.66720523.737302.2957015.5236011.93950K562DNAJC2
CA1ENSG00000133742.91436.56050747.778800.9418010.132107.80180K562EEF2
CA1ENSG00000133742.9317.13890872.90000-1.4607036.2929034.26520K562EIF2S2
CA1ENSG00000133742.9374.24120773.26620-1.0470011.589509.29760K562EIF3D
CA1ENSG00000133742.9585.33770383.805200.608802.020801.31670K562EIF4A3
CA1ENSG00000133742.92440.469601532.109800.6715015.8267013.68990K562EIF4G2
CA1ENSG00000133742.91981.332701324.630400.580804.414202.31490K562ESF1
CA1ENSG00000133742.92908.448503907.04430-0.425803.570302.10630K562EXOSC5
CA1ENSG00000133742.9402.73720643.24540-0.675504.638202.41930K562FAM120A
CA1ENSG00000133742.92522.894501245.875301.0178021.0438018.47330K562FIP1L1
CA1ENSG00000133742.91314.221001738.54230-0.403703.515402.54830K562FMR1
CA1ENSG00000133742.91229.449202214.71700-0.849106.309003.16860K562FXR2
CA1ENSG00000133742.9526.88470363.253600.536404.099102.31990K562G3BP1
CA1ENSG00000133742.9849.05870512.527600.728104.661903.69110K562G3BP2
CA1ENSG00000133742.92476.20690861.841701.5225035.0767031.93940K562GLRX3
CA1ENSG00000133742.93152.498901631.108400.9505020.8897018.58350K562GPKOW
CA1ENSG00000133742.92771.677001163.184901.2526034.6788031.89230K562GRSF1
CA1ENSG00000133742.91103.24400797.254200.468504.191201.65230K562GRWD1
CA1ENSG00000133742.92722.13670868.312001.648408.497805.40170K562HNRNPA0
CA1ENSG00000133742.92524.82030808.941901.6420013.6060011.51320K562HNRNPA1
CA1ENSG00000133742.91582.01780916.879400.7869012.7500011.54530K562HNRNPC
CA1ENSG00000133742.91253.77750819.019200.614207.381905.44800K562HNRNPF
CA1ENSG00000133742.92273.182901382.510400.717302.489301.49260K562HNRNPL
CA1ENSG00000133742.9457.906301024.70430-1.1621015.6874013.06460K562HNRNPM
CA1ENSG00000133742.91814.76530895.730001.0185015.4119013.40630K562HNRNPU
CA1ENSG00000133742.91330.725101689.20690-0.344102.872402.06200K562HSPD1
CA1ENSG00000133742.91304.36750480.172801.4416018.3124015.04330K562ILF3
CA1ENSG00000133742.91319.30400463.814901.5081024.9306021.36050K562KHDRBS1
CA1ENSG00000133742.91330.063101764.81640-0.408005.170302.59700K562CCAR2
CA1ENSG00000133742.9977.06960686.558300.509003.705902.73240K562KIF1C
CA1ENSG00000133742.9555.30500888.60860-0.678304.492402.66280K562LARP7
CA1ENSG00000133742.91463.23760930.444700.653107.265004.70110K562LIN28B
CA1ENSG00000133742.9396.37320818.13020-1.045507.741905.13760K562LSM11
CA1ENSG00000133742.9534.35820399.324400.420102.295501.52580K562MAGOH
CA1ENSG00000133742.9954.57700398.554201.2600025.0104022.20020K562MATR3
CA1ENSG00000133742.92608.122401592.177500.7119012.3638010.44070K562METAP2
CA1ENSG00000133742.92321.454601633.095200.507306.201404.52740K562MSI2
CA1ENSG00000133742.92947.61710906.084101.7017058.7776055.97410K562MTPAP
CA1ENSG00000133742.9865.26250539.089600.682502.926902.01600K562NAA15
CA1ENSG00000133742.94312.246701675.826501.363505.328403.20840K562NOL12
CA1ENSG00000133742.93314.357501006.909401.7187059.9865057.28610K562NSUN2
CA1ENSG00000133742.91349.20810757.906000.831908.282205.27840K562PA2G4
CA1ENSG00000133742.91635.87700576.256501.505204.596203.23130K562PABPN1
CA1ENSG00000133742.91098.04720460.781101.252709.595505.94480K562PARN
CA1ENSG00000133742.98223.338704969.729700.7265010.614408.98920K562PCBP3
CA1ENSG00000133742.9999.11370684.551000.545404.199001.88220K562PES1
CA1ENSG00000133742.9400.83520886.30150-1.144806.961904.41710K562PKM
CA1ENSG00000133742.91929.241101414.248600.447904.297103.24410K562PPIG
CA1ENSG00000133742.9522.59160702.97100-0.427802.844202.08520K562PRPF8
CA1ENSG00000133742.9458.86450822.14650-0.841307.422305.80370K562PSIP1
CA1ENSG00000133742.988.73760387.94900-2.1283017.7848016.17330K562PTBP1
CA1ENSG00000133742.91103.77320641.622000.782509.266508.32310K562PUS1
CA1ENSG00000133742.91576.80050625.100801.3347039.8142037.46340K562RBM15
CA1ENSG00000133742.93073.803301103.149601.4783011.671308.59120K562RBM17
CA1ENSG00000133742.9244.09630362.65590-0.571203.132201.62600K562RBM34
CA1ENSG00000133742.9184.99680391.58460-1.081805.360403.77390K562NELFE
CA1ENSG00000133742.92097.06330788.925001.410304.354001.66500K562DROSHA
CA1ENSG00000133742.91030.43290358.884201.5216013.7536010.67050K562RPS10
CA1ENSG00000133742.9447.97060715.91580-0.676405.126504.01200K562RPS19
CA1ENSG00000133742.91946.290102597.96120-0.416703.832902.62990K562RPS3
CA1ENSG00000133742.92451.54100718.607201.7703032.7802028.89550K562RRP9
CA1ENSG00000133742.92196.47650934.312101.233103.971901.76610K562SAFB2
CA1ENSG00000133742.93025.35440880.788901.780109.778606.86720K562SBDS
CA1ENSG00000133742.95277.462003511.770200.587504.637202.75170K562SDAD1
CA1ENSG00000133742.9994.42890601.421100.725404.963002.87540K562SERBP1
CA1ENSG00000133742.91995.66000993.311801.0064012.2533010.63870K562SF3A3
CA1ENSG00000133742.91775.34150505.963101.8109044.3465040.45980K562SLBP
CA1ENSG00000133742.91067.99270702.148500.605003.319101.49530K562SRP68
CA1ENSG00000133742.93683.488501017.646801.8557017.5555015.49030K562SRPK2
CA1ENSG00000133742.9137.18650380.28990-1.4710011.8020010.34830K562SRSF1
CA1ENSG00000133742.94685.806201896.819601.3046010.824908.48640K562SRSF7
CA1ENSG00000133742.96280.626804338.571900.5336010.390307.56080K562SRSF9
CA1ENSG00000133742.91062.63640375.809701.4995041.2886037.21950K562SSB
CA1ENSG00000133742.92959.793401634.735100.8563014.6948011.41170K562SSRP1
CA1ENSG00000133742.92380.085701458.549800.7064015.2174012.32460K562SUCLG1
CA1ENSG00000133742.92447.70410741.768401.722308.236204.62490K562SUGP2
CA1ENSG00000133742.92073.16170723.723101.518204.832402.76630K562SUPT6H
CA1ENSG00000133742.91707.57960680.378901.327408.481706.66210K562SUPV3L1
CA1ENSG00000133742.91514.069703823.54470-1.3365019.4854017.40020K562SYNCRIP
CA1ENSG00000133742.91048.87930620.360200.757607.732505.10720K562TFIP11
CA1ENSG00000133742.9258.91760371.30310-0.520102.765401.94800K562TIA1
CA1ENSG00000133742.92475.42190790.727601.6463015.4928013.15180K562TIAL1
CA1ENSG00000133742.91691.54420840.411901.009102.479601.59280K562TRIM56
CA1ENSG00000133742.95022.424703613.094300.475004.464702.20130K562TRNAU1AP
CA1ENSG00000133742.91616.675301089.083300.569804.862702.50400K562TUFM
CA1ENSG00000133742.9876.13370496.002100.820705.969504.22370K562U2AF1
CA1ENSG00000133742.91226.26600512.525101.2585021.7011019.42320K562U2AF2
CA1ENSG00000133742.91060.72750720.221900.558404.732603.36000K562UCHL5
CA1ENSG00000133742.91945.970001067.634000.8660012.5351011.14490K562UPF1
CA1ENSG00000133742.91582.53810650.460701.282603.027801.65040K562UTP18
CA1ENSG00000133742.92518.79000913.562501.4631010.359908.62570K562WDR3
CA1ENSG00000133742.92034.68530949.849301.0989016.1495014.33910K562WDR43
CA1ENSG00000133742.92580.177701462.598200.8188016.5104013.82470K562WRN
CA1ENSG00000133742.91211.69780733.583700.723907.896405.55820K562XRN2
CA1ENSG00000133742.93951.877401390.108301.5072050.5823047.20530K562ZC3H8
CA1ENSG00000133742.95197.912504065.068800.354603.738501.59190K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CA1 is not available on ENCORE database.





10 RBPs can affect the splicing of CA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECA1ENSG00000133742.9chr8-862549778625505486253827862538888629027486290342-0.052000.000050.00349excludedK562HNRNPU
SECA1ENSG00000133742.9chr8-8625382786253888862504808625067886290274862903420.058000.000020.00394includedK562CPSF6
SECA1ENSG00000133742.9chr8-862538278625388886250480862506788629027486290342-0.173000.002660.08372excludedK562PTBP1
A3SSCA1ENSG00000133742.9chr8-8625048086250720862504808625067886290274862903420.141000.013950.07029longerK562AQR
MXECA1ENSG00000133742.9chr8-8625048086250678862538278625388886249173862492928629027486290342-0.281000.000330.015542includedK562PTBP1
MXECA1ENSG00000133742.9chr8-86250480862506788625382786253888862491738624929286290274862903420.119000.003580.080211includedK562UCHL5
MXECA1ENSG00000133742.9chr8-8625048086250678862538278625388886249173862492928629027486290342-0.133000.003500.053552includedK562PUS1
MXECA1ENSG00000133742.9chr8-86250480862506788625382786253888862491738624929286290274862903420.119000.002870.069001includedK562XRN2
MXECA1ENSG00000133742.9chr8-86250480862506788625382786253888862491738624929286290274862903420.140000.003430.067961includedK562SBDS
MXECA1ENSG00000133742.9chr8-8624191786242073862447188624478186240457862409058624575386245849-0.200000.000060.005302includedK562SBDS
MXECA1ENSG00000133742.9chr8-86250480862506788625382786253888862491738624929286290274862903420.121000.005860.091031includedK562FXR2
MXECA1ENSG00000133742.9chr8-86249173862492928625382786253888862457538624584986290274862903420.115000.004010.069621includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CA1 is not avaliable on ENCORE database.